Wall clock time and date at job start Mon Mar 30 2020 03:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47111 * 2 1 4 4 C 1.50699 * 109.47159 * 240.00350 * 2 1 3 5 5 H 1.08000 * 119.99800 * 239.99561 * 4 2 1 6 6 C 1.37874 * 120.00230 * 60.00036 * 4 2 1 7 7 N 1.31514 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46981 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46936 * 119.99993 * 8 6 4 11 11 H 1.48494 * 109.47123 * 239.99812 * 8 6 4 12 12 N 1.46503 * 109.47112 * 119.99996 * 2 1 3 13 13 C 1.46304 * 120.01920 * 240.00286 * 12 2 1 14 14 C 1.52630 * 110.28897 * 143.58583 * 13 12 2 15 15 N 1.46311 * 110.44643 * 52.59699 * 14 13 12 16 16 C 1.46504 * 120.01820 * 143.68433 * 15 14 13 17 17 C 1.34980 * 119.96142 * 323.71212 * 15 14 13 18 18 O 1.21346 * 120.63170 * 181.13351 * 17 15 14 19 19 C 1.34817 * 119.90609 * 60.22265 * 12 2 1 20 20 O 1.21351 * 120.67404 * 1.10269 * 19 12 2 21 21 H 1.09000 * 109.47114 * 60.00194 * 1 2 3 22 22 H 1.09002 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47534 * 299.99881 * 1 2 3 24 24 H 0.97006 * 119.99940 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.31014 * 23.38480 * 13 12 2 26 26 H 1.09001 * 109.30863 * 263.78689 * 13 12 2 27 27 H 1.09001 * 109.30738 * 172.89844 * 14 13 12 28 28 H 1.09002 * 109.30701 * 292.30340 * 14 13 12 29 29 H 1.08999 * 109.46900 * 90.00154 * 16 15 14 30 30 H 1.08996 * 109.47393 * 210.00185 * 16 15 14 31 31 H 1.09006 * 109.46781 * 330.00323 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 3.1485 -2.2855 -3.6037 10 1 1.1680 -1.5864 -4.8165 11 1 3.1473 -0.1856 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 2.8594 0.0200 2.1595 14 6 2.5306 -0.4282 3.5810 15 7 2.5935 -1.8863 3.6846 16 6 3.1011 -2.5129 4.9077 17 6 2.1842 -2.6537 2.6525 18 8 2.2118 -3.8642 2.7329 19 6 1.6952 -1.9827 1.4054 20 8 1.0181 -2.5894 0.6016 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7082 1.1610 -3.4844 25 1 2.6834 1.0920 2.0699 26 1 3.9075 -0.1920 1.9482 27 1 3.2475 0.0136 4.2731 28 1 1.5274 -0.0914 3.8421 29 1 2.2755 -2.6818 5.5990 30 1 3.5688 -3.4659 4.6606 31 1 3.8367 -1.8571 5.3736 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259905496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:15 Heat of formation + Delta-G solvation = -51.051492 kcal Electronic energy + Delta-G solvation = -16298.235524 eV Core-core repulsion = 13580.505031 eV Total energy + Delta-G solvation = -2717.730492 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48053 -37.92179 -36.69396 -34.53046 -32.90816 -30.38061 -28.57322 -27.37457 -25.16451 -23.52612 -23.16521 -20.59305 -17.93066 -17.68177 -16.63052 -16.26561 -15.77228 -14.94735 -14.44217 -14.06000 -13.97502 -13.57496 -13.26960 -12.70413 -12.64268 -12.35833 -12.10868 -11.68738 -11.41202 -11.02605 -10.82189 -10.76701 -10.59260 -10.28535 -10.07281 -9.27277 -8.80460 -8.67154 -8.34198 -7.78825 -6.05016 -4.08668 2.05080 2.87920 3.31944 3.40166 3.45028 3.55916 3.92324 4.43427 4.62914 4.79759 5.09165 5.15743 5.28069 5.34995 5.43531 5.63197 5.70414 5.95985 6.27615 6.65411 6.88064 6.98025 7.03813 7.22611 7.63352 7.70508 7.93779 8.01144 8.11301 8.39812 8.80742 8.96386 9.56315 11.00873 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.040638 B = 0.008606 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.849206 B = 3252.726222 C = 3524.116856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.268 3.732 3 H 0.050 0.950 4 C -0.507 4.507 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.588 5.588 13 C 0.095 3.905 14 C 0.097 3.903 15 N -0.614 5.614 16 C 0.084 3.916 17 C 0.507 3.493 18 O -0.505 6.505 19 C 0.504 3.496 20 O -0.471 6.471 21 H 0.094 0.906 22 H 0.049 0.951 23 H 0.007 0.993 24 H 0.262 0.738 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 2.253 13.567 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.169 3.831 3 H 0.067 0.933 4 C -0.545 4.545 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.325 5.325 13 C -0.030 4.030 14 C -0.026 4.026 15 N -0.353 5.353 16 C -0.059 4.059 17 C 0.290 3.710 18 O -0.377 6.377 19 C 0.284 3.716 20 O -0.341 6.341 21 H 0.112 0.888 22 H 0.069 0.931 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.148 1.356 12.991 13.704 hybrid contribution 0.386 -0.272 -0.687 0.834 sum 4.534 1.084 12.304 13.158 Atomic orbital electron populations 1.22153 0.97659 1.01326 1.00313 1.19028 0.91722 0.92182 0.80157 0.93262 1.21298 1.31001 1.12318 0.89923 0.92224 1.24832 0.95040 0.95028 0.98959 1.69866 1.36959 1.23081 1.23619 0.86402 0.78674 0.79622 0.82555 1.19764 1.20874 1.21096 1.48587 1.49434 1.10049 1.24393 1.21754 0.95765 0.98652 0.86785 1.21932 1.03123 0.79403 0.98151 1.48122 1.64030 1.06980 1.16157 1.21691 0.98969 0.99403 0.85819 1.21303 0.77616 0.87550 0.84510 1.90697 1.52229 1.13491 1.81310 1.19845 0.82998 0.82630 0.86145 1.90767 1.36046 1.63463 1.43820 0.88787 0.93148 0.97403 0.92856 0.88115 0.91441 0.88565 0.90929 0.92658 0.90562 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 8.90 37.16 0.33 -3.50 16 2 C 0.27 6.51 2.66 -69.08 -0.18 6.32 16 3 H 0.05 1.19 7.70 -51.93 -0.40 0.79 16 4 C -0.51 -14.13 7.58 -34.44 -0.26 -14.39 16 5 H 0.06 1.76 7.44 -52.49 -0.39 1.37 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.90 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.59 -12.02 2.75 -168.14 -0.46 -12.49 16 13 C 0.09 1.32 6.54 -4.34 -0.03 1.29 16 14 C 0.10 1.05 6.57 -4.33 -0.03 1.02 16 15 N -0.61 -8.62 3.22 -182.24 -0.59 -9.20 16 16 C 0.08 0.87 10.48 59.85 0.63 1.50 16 17 C 0.51 9.94 7.59 -11.32 -0.09 9.85 16 18 O -0.51 -11.31 16.69 -8.95 -0.15 -11.46 16 19 C 0.50 11.43 6.85 -11.39 -0.08 11.35 16 20 O -0.47 -12.80 14.24 -8.95 -0.13 -12.92 16 21 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 22 H 0.05 1.33 6.24 -51.93 -0.32 1.00 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.10 1.19 7.77 -51.93 -0.40 0.78 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.10 0.65 7.81 -51.93 -0.41 0.24 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.90 7.47 -51.93 -0.39 0.51 16 31 H 0.07 0.50 7.85 -51.93 -0.41 0.10 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -34.06 260.79 -5.45 -39.52 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -3.86 Total: -5.09 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 0.20 Total: 15.09 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.42 Total: -46.16 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.28 Total: -24.38 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.06 -5.45 -39.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.535 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds