Wall clock time and date at job start Mon Mar 30 2020 03:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47111 * 2 1 4 4 C 1.50699 * 109.47159 * 240.00350 * 2 1 3 5 5 H 1.08000 * 119.99800 * 239.99561 * 4 2 1 6 6 C 1.37874 * 120.00230 * 60.00036 * 4 2 1 7 7 N 1.31514 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99914 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46981 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46936 * 119.99993 * 8 6 4 11 11 H 1.48494 * 109.47123 * 239.99812 * 8 6 4 12 12 N 1.46503 * 109.47112 * 119.99996 * 2 1 3 13 13 C 1.46304 * 120.01920 * 240.00286 * 12 2 1 14 14 C 1.52630 * 110.28897 * 143.58583 * 13 12 2 15 15 N 1.46311 * 110.44643 * 52.59699 * 14 13 12 16 16 C 1.46504 * 120.01820 * 143.68433 * 15 14 13 17 17 C 1.34980 * 119.96142 * 323.71212 * 15 14 13 18 18 O 1.21346 * 120.63170 * 181.13351 * 17 15 14 19 19 C 1.34817 * 119.90609 * 60.22265 * 12 2 1 20 20 O 1.21351 * 120.67404 * 1.10269 * 19 12 2 21 21 H 1.09000 * 109.47114 * 60.00194 * 1 2 3 22 22 H 1.09002 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47534 * 299.99881 * 1 2 3 24 24 H 0.97006 * 119.99940 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.31014 * 23.38480 * 13 12 2 26 26 H 1.09001 * 109.30863 * 263.78689 * 13 12 2 27 27 H 1.09001 * 109.30738 * 172.89844 * 14 13 12 28 28 H 1.09002 * 109.30701 * 292.30340 * 14 13 12 29 29 H 1.08999 * 109.46900 * 90.00154 * 16 15 14 30 30 H 1.08996 * 109.47393 * 210.00185 * 16 15 14 31 31 H 1.09006 * 109.46781 * 330.00323 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 3.1485 -2.2855 -3.6037 10 1 1.1680 -1.5864 -4.8165 11 1 3.1473 -0.1856 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 2.8594 0.0200 2.1595 14 6 2.5306 -0.4282 3.5810 15 7 2.5935 -1.8863 3.6846 16 6 3.1011 -2.5129 4.9077 17 6 2.1842 -2.6537 2.6525 18 8 2.2118 -3.8642 2.7329 19 6 1.6952 -1.9827 1.4054 20 8 1.0181 -2.5894 0.6016 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7082 1.1610 -3.4844 25 1 2.6834 1.0920 2.0699 26 1 3.9075 -0.1920 1.9482 27 1 3.2475 0.0136 4.2731 28 1 1.5274 -0.0914 3.8421 29 1 2.2755 -2.6818 5.5990 30 1 3.5688 -3.4659 4.6606 31 1 3.8367 -1.8571 5.3736 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259905496.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:15 Heat of formation + Delta-G solvation = -75.936166 kcal Electronic energy + Delta-G solvation = -16299.314604 eV Core-core repulsion = 13580.505031 eV Total energy + Delta-G solvation = -2718.809573 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.97261 -39.54215 -38.13190 -36.27353 -34.69942 -32.02069 -30.04226 -28.59455 -27.28009 -24.83782 -24.59859 -22.35923 -19.35468 -19.21867 -18.28129 -17.80775 -17.29551 -16.79460 -15.87482 -15.67099 -15.55439 -15.09718 -14.54769 -14.51410 -13.77950 -13.70319 -13.36710 -13.27908 -13.01839 -12.79106 -12.69666 -12.47703 -12.33777 -12.18020 -12.12180 -11.21288 -10.63569 -10.26400 -9.94021 -9.47558 -8.17094 -6.26296 0.47770 1.33951 1.38318 1.48683 1.61466 2.02312 2.34324 2.41670 3.11362 3.35375 3.78699 4.21788 4.26122 4.54714 4.63768 4.64502 4.74018 4.93726 4.94295 4.97051 5.08896 5.11190 5.36480 5.57734 5.76336 5.87604 5.98375 6.12846 6.48203 6.70202 6.75350 7.18587 7.42567 8.86896 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.040638 B = 0.008606 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.849206 B = 3252.726222 C = 3524.116856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.271 3.729 3 H 0.057 0.943 4 C -0.524 4.524 5 H 0.031 0.969 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.948 3.052 9 H -0.285 1.285 10 H -0.282 1.282 11 H -0.266 1.266 12 N -0.584 5.584 13 C 0.080 3.920 14 C 0.097 3.903 15 N -0.595 5.595 16 C 0.078 3.922 17 C 0.506 3.494 18 O -0.548 6.548 19 C 0.490 3.510 20 O -0.537 6.537 21 H 0.071 0.929 22 H 0.021 0.979 23 H 0.038 0.962 24 H 0.266 0.734 25 H 0.129 0.871 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 4.034 15.802 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.170 3.830 3 H 0.075 0.925 4 C -0.563 4.563 5 H 0.049 0.951 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.775 3.225 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.319 5.319 13 C -0.042 4.042 14 C -0.024 4.024 15 N -0.331 5.331 16 C -0.063 4.063 17 C 0.289 3.711 18 O -0.424 6.424 19 C 0.271 3.729 20 O -0.411 6.411 21 H 0.090 0.910 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.095 0.905 27 H 0.176 0.824 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.513 3.223 15.300 16.579 hybrid contribution 0.013 -0.744 -1.300 1.498 sum 5.526 2.478 13.999 15.253 Atomic orbital electron populations 1.21951 0.98112 0.99493 1.00648 1.18767 0.91404 0.92167 0.80696 0.92546 1.21441 1.31088 1.11674 0.92048 0.95063 1.25431 0.95359 0.95769 1.01111 1.69921 1.37190 1.23559 1.24293 0.85657 0.78195 0.78600 0.80052 1.21049 1.20831 1.19057 1.48602 1.49261 1.09658 1.24389 1.22265 0.95070 0.99742 0.87076 1.22284 1.05895 0.77178 0.97083 1.48219 1.61182 1.08203 1.15489 1.22030 1.00481 0.99688 0.84097 1.20712 0.78424 0.87141 0.84866 1.90671 1.54691 1.15016 1.82029 1.20582 0.82328 0.83079 0.86903 1.90714 1.39034 1.65081 1.46319 0.91007 0.95965 0.94349 0.92509 0.85344 0.90493 0.82414 0.89630 0.91259 0.92357 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.12 8.90 71.98 0.64 -6.48 16 2 C 0.27 13.15 2.66 44.24 0.12 13.27 16 3 H 0.06 2.67 7.70 -2.39 -0.02 2.65 16 4 C -0.52 -29.92 7.58 25.60 0.19 -29.73 16 5 H 0.03 1.92 7.44 -2.91 -0.02 1.90 16 6 C 0.02 1.29 5.30 84.65 0.45 1.73 16 7 N -0.91 -51.19 11.32 21.45 0.24 -50.95 16 8 Si 0.95 45.99 29.54 68.60 2.03 48.01 16 9 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.58 -23.50 2.75 -804.22 -2.22 -25.71 16 13 C 0.08 1.94 6.54 86.29 0.56 2.51 16 14 C 0.10 1.59 6.57 86.29 0.57 2.15 16 15 N -0.59 -14.70 3.22 -848.74 -2.73 -17.43 16 16 C 0.08 1.29 10.48 127.77 1.34 2.63 16 17 C 0.51 19.70 7.59 87.35 0.66 20.37 16 18 O -0.55 -25.10 16.69 10.58 0.18 -24.92 16 19 C 0.49 22.67 6.85 87.38 0.60 23.27 16 20 O -0.54 -30.80 14.24 10.57 0.15 -30.65 16 21 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 22 H 0.02 1.19 6.24 -2.39 -0.01 1.17 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 25 H 0.13 2.44 7.77 -2.39 -0.02 2.42 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.16 0.84 7.81 -2.39 -0.02 0.82 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.23 7.47 -2.39 -0.02 1.21 16 31 H 0.12 0.88 7.85 -2.38 -0.02 0.86 16 Total: -1.00 -79.65 260.79 3.91 -75.74 By element: Atomic # 1 Polarization: -4.93 SS G_CDS: 1.13 Total: -3.80 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 5.13 Total: 29.72 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -4.71 Total: -94.09 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: 0.33 Total: -55.58 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.65 3.91 -75.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905496.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.200 kcal (2) G-P(sol) polarization free energy of solvation -79.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds