Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 108.76260 * 2 1 4 4 C 1.51876 * 108.79184 * 118.25473 * 2 1 3 5 5 N 1.45569 * 111.33806 * 55.44277 * 4 2 1 6 6 C 1.46497 * 118.74092 * 251.54782 * 5 4 2 7 7 C 1.32526 * 122.51679 * 71.27441 * 5 4 2 8 8 O 1.21284 * 120.28961 * 184.51775 * 7 5 4 9 9 C 1.50692 * 119.42021 * 4.53328 * 7 5 4 10 10 C 1.49233 * 110.98093 * 295.74321 * 9 7 5 11 11 O 1.21296 * 116.48719 * 226.30751 * 10 9 7 12 12 N 1.31326 * 127.01842 * 46.28685 * 10 9 7 13 13 C 1.37101 * 114.08104 * 177.19955 * 12 10 9 14 14 H 1.07992 * 120.00462 * 41.14531 * 13 12 10 15 15 C 1.38959 * 119.99274 * 221.14771 * 13 12 10 16 16 N 1.31407 * 120.00512 * 24.95840 * 15 13 12 17 17 Si 1.86802 * 119.99390 * 204.95691 * 15 13 12 18 18 H 1.48498 * 109.46918 * 90.00074 * 17 15 13 19 19 H 1.48505 * 109.46928 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47391 * 329.99916 * 17 15 13 21 21 H 1.09000 * 109.47114 * 178.35974 * 1 2 3 22 22 H 1.08997 * 109.46961 * 298.35954 * 1 2 3 23 23 H 1.08995 * 109.46875 * 58.35848 * 1 2 3 24 24 H 1.09003 * 109.10261 * 294.96378 * 4 2 1 25 25 H 1.09001 * 109.10465 * 175.92162 * 4 2 1 26 26 H 1.09007 * 109.47154 * 179.73407 * 6 5 4 27 27 H 1.09005 * 109.47277 * 299.73521 * 6 5 4 28 28 H 1.09002 * 109.46901 * 59.73571 * 6 5 4 29 29 H 1.08999 * 109.17724 * 56.12668 * 9 7 5 30 30 H 1.09001 * 109.17979 * 175.35337 * 9 7 5 31 31 H 0.96995 * 120.00509 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8806 1.0320 0.0000 4 6 2.0193 -0.6806 1.2665 5 7 1.4618 -2.0189 1.3978 6 6 0.4435 -2.2604 2.4229 7 6 1.8364 -3.0260 0.6220 8 8 1.2877 -4.1039 0.7113 9 6 2.9503 -2.8202 -0.3718 10 6 2.5639 -1.8177 -1.4075 11 8 2.7992 -2.1127 -2.5603 12 7 1.9962 -0.6508 -1.2056 13 6 1.8115 0.0865 -2.3466 14 1 1.4757 -0.3957 -3.2527 15 6 2.0566 1.4542 -2.3372 16 7 2.8942 1.9657 -1.4633 17 14 1.1954 2.5658 -3.5669 18 1 -0.0868 3.0429 -2.9894 19 1 2.0638 3.7306 -3.8741 20 1 0.9246 1.8076 -4.8146 21 1 -0.3633 -1.0272 -0.0294 22 1 -0.3633 0.4881 0.9043 23 1 -0.3633 0.5391 -0.8749 24 1 1.7227 -0.0843 2.1294 25 1 3.1068 -0.7484 1.2378 26 1 0.1304 -3.3038 2.3854 27 1 0.8588 -2.0408 3.4065 28 1 -0.4165 -1.6162 2.2396 29 1 3.8382 -2.4682 0.1534 30 1 3.1759 -3.7690 -0.8585 31 1 3.0650 2.9205 -1.4564 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259905653.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -65.120913 kcal Electronic energy + Delta-G solvation = -16816.988588 eV Core-core repulsion = 14098.648000 eV Total energy + Delta-G solvation = -2718.340588 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09535 -40.13690 -38.05350 -36.23068 -33.82132 -32.28410 -31.70013 -28.27091 -27.29407 -26.20024 -23.80852 -21.06067 -20.53049 -19.04136 -18.08388 -17.63973 -17.07573 -16.68625 -16.36812 -15.75844 -15.45988 -15.29304 -14.34686 -14.06513 -13.82557 -13.73730 -13.66179 -13.15345 -13.07252 -12.84839 -12.79623 -12.35728 -12.25271 -12.07985 -11.95043 -11.18238 -10.93788 -10.36418 -9.72947 -9.38793 -8.35501 -6.14316 1.30922 1.42087 1.43965 1.53829 1.91066 2.18862 2.32198 2.93409 2.97172 3.46283 3.88319 4.00583 4.10884 4.16337 4.50877 4.53318 4.62040 4.67534 4.76041 4.87961 4.95930 5.00918 5.27440 5.45979 5.49656 5.57376 6.25872 6.31070 6.47398 7.00485 7.14648 7.50817 7.98404 8.64003 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.010992 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.013822 B = 2546.737219 C = 2926.253178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.103 3.897 3 H 0.120 0.880 4 C 0.108 3.892 5 N -0.592 5.592 6 C 0.067 3.933 7 C 0.526 3.474 8 O -0.585 6.585 9 C -0.142 4.142 10 C 0.453 3.547 11 O -0.638 6.638 12 N -0.427 5.427 13 C -0.354 4.354 14 H 0.054 0.946 15 C 0.022 3.978 16 N -0.875 5.875 17 Si 0.968 3.032 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.284 1.284 21 H 0.033 0.967 22 H 0.092 0.908 23 H 0.040 0.960 24 H 0.143 0.857 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 1.702 11.617 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.001 4.001 3 H 0.137 0.863 4 C -0.015 4.015 5 N -0.322 5.322 6 C -0.075 4.075 7 C 0.313 3.687 8 O -0.467 6.467 9 C -0.185 4.185 10 C 0.241 3.759 11 O -0.527 6.527 12 N -0.144 5.144 13 C -0.482 4.482 14 H 0.072 0.928 15 C -0.182 4.182 16 N -0.512 5.512 17 Si 0.792 3.208 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.209 1.209 21 H 0.052 0.948 22 H 0.110 0.890 23 H 0.060 0.940 24 H 0.161 0.839 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.129 0.871 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.340 1.204 11.294 11.839 hybrid contribution -0.105 0.365 -1.104 1.168 sum -3.445 1.569 10.190 10.870 Atomic orbital electron populations 1.22016 0.95086 1.00533 1.02325 1.21418 0.94881 1.00717 0.83128 0.86335 1.21689 0.99310 0.81686 0.98800 1.47137 1.40972 1.09607 1.34505 1.22053 0.91313 1.03244 0.90865 1.19705 0.83958 0.83937 0.81073 1.90645 1.57755 1.27447 1.70858 1.21653 0.99697 1.01024 0.96088 1.19228 0.81660 0.85225 0.89781 1.90550 1.59648 1.78246 1.24252 1.42668 1.49323 1.13749 1.08632 1.19283 1.46327 0.90512 0.92128 0.92823 1.25877 0.94720 0.98320 0.99330 1.69911 1.29007 1.14364 1.37894 0.85329 0.79205 0.77586 0.78660 1.18150 1.19942 1.20934 0.94797 0.88976 0.94042 0.83922 0.90268 0.91239 0.88546 0.90485 0.84664 0.87109 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.39 71.98 0.60 -4.25 16 2 C 0.10 3.90 2.65 44.96 0.12 4.02 16 3 H 0.12 4.94 5.22 -2.39 -0.01 4.92 16 4 C 0.11 2.99 5.20 86.18 0.45 3.44 16 5 N -0.59 -17.51 2.11 -854.57 -1.80 -19.31 16 6 C 0.07 1.47 10.17 127.77 1.30 2.77 16 7 C 0.53 19.78 7.10 88.00 0.62 20.40 16 8 O -0.59 -25.18 16.27 -3.04 -0.05 -25.23 16 9 C -0.14 -5.65 5.33 28.64 0.15 -5.49 16 10 C 0.45 23.12 7.06 87.73 0.62 23.74 16 11 O -0.64 -38.99 15.79 -3.08 -0.05 -39.04 16 12 N -0.43 -20.99 2.56 -625.51 -1.60 -22.59 16 13 C -0.35 -19.65 7.29 84.04 0.61 -19.04 16 14 H 0.05 3.35 7.37 -2.91 -0.02 3.33 16 15 C 0.02 1.09 4.76 84.93 0.40 1.50 16 16 N -0.87 -43.29 11.47 21.67 0.25 -43.04 16 17 Si 0.97 40.64 29.62 68.60 2.03 42.67 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H 0.03 1.21 7.34 -2.39 -0.02 1.19 16 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.04 1.61 7.64 -2.39 -0.02 1.59 16 24 H 0.14 2.64 7.88 -2.39 -0.02 2.62 16 25 H 0.08 2.21 7.28 -2.39 -0.02 2.20 16 26 H 0.07 1.81 6.77 -2.38 -0.02 1.80 16 27 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.08 1.48 7.54 -2.39 -0.02 1.46 16 29 H 0.14 4.44 7.54 -2.39 -0.02 4.42 16 30 H 0.11 4.47 8.03 -2.39 -0.02 4.45 16 31 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 Total: -1.00 -72.10 254.26 4.80 -67.30 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.13 Total: 12.14 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 4.88 Total: 27.09 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -3.15 Total: -84.94 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -0.10 Total: -64.27 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -72.10 4.80 -67.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905653.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.179 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds