Wall clock time and date at job start Mon Mar 30 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48511 * 109.46847 * 264.88876 * 3 2 1 5 5 H 1.48503 * 109.47162 * 24.88174 * 3 2 1 6 6 H 1.48493 * 109.47485 * 144.88575 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99714 * 353.12614 * 7 2 1 9 9 C 1.50704 * 120.00041 * 173.13188 * 7 2 1 10 10 H 1.09000 * 109.47034 * 1.21915 * 9 7 2 11 11 C 1.52999 * 109.46937 * 241.22102 * 9 7 2 12 12 C 1.53773 * 113.61700 * 159.13503 * 11 9 7 13 13 C 1.53951 * 87.02227 * 220.05037 * 12 11 9 14 14 C 1.53781 * 87.11147 * 25.36263 * 13 12 11 15 15 C 1.52998 * 109.47031 * 121.21811 * 9 7 2 16 16 H 1.09009 * 108.72910 * 63.95885 * 15 9 7 17 17 C 1.52945 * 108.88504 * 182.46050 * 15 9 7 18 18 C 1.55150 * 108.95787 * 150.89673 * 17 15 9 19 19 S 1.84207 * 100.96393 * 318.62296 * 18 17 15 20 20 C 1.53701 * 108.89235 * 305.44716 * 15 9 7 21 21 H 0.96998 * 119.99963 * 0.02562 * 1 2 3 22 22 H 1.08996 * 112.84740 * 290.33411 * 11 9 7 23 23 H 1.09010 * 113.61342 * 334.56931 * 12 11 9 24 24 H 1.08995 * 113.61614 * 105.46529 * 12 11 9 25 25 H 1.09006 * 113.53331 * 270.80871 * 13 12 11 26 26 H 1.09002 * 113.74447 * 139.94443 * 13 12 11 27 27 H 1.08997 * 113.61078 * 220.09423 * 14 13 12 28 28 H 1.08991 * 113.61627 * 89.19206 * 14 13 12 29 29 H 1.09000 * 109.60419 * 270.83069 * 17 15 9 30 30 H 1.09005 * 109.60086 * 31.15218 * 17 15 9 31 31 H 1.09000 * 111.13430 * 76.47621 * 18 17 15 32 32 H 1.09002 * 111.12923 * 200.65306 * 18 17 15 33 33 H 1.09007 * 110.33913 * 355.25322 * 20 15 9 34 34 H 1.08998 * 110.34750 * 117.40180 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6047 1.9840 -1.3946 5 1 1.3967 2.6815 0.5891 6 1 3.4885 1.4739 0.8053 7 6 2.0046 -1.1940 0.0005 8 1 1.4704 -2.1259 0.1129 9 6 3.5035 -1.1988 -0.1555 10 1 3.8639 -0.1730 -0.2333 11 6 3.8820 -1.9697 -1.4217 12 6 5.2817 -1.6255 -1.9574 13 6 4.6687 -1.6855 -3.3683 14 6 3.3192 -1.3498 -2.7117 15 6 4.1408 -1.8723 1.0614 16 1 3.8279 -2.9162 1.0876 17 6 5.6625 -1.8151 0.9186 18 6 6.3006 -1.7829 2.3324 19 16 5.1633 -0.6252 3.2038 20 6 3.6430 -1.1716 2.3356 21 1 -0.4850 0.8400 -0.0004 22 1 3.6985 -3.0407 -1.3359 23 1 5.6258 -0.6311 -1.6727 24 1 6.0240 -2.4012 -1.7694 25 1 4.7017 -2.6792 -3.8153 26 1 5.0336 -0.9074 -4.0388 27 1 2.4795 -1.9034 -3.1319 28 1 3.1257 -0.2801 -2.6337 29 1 6.0126 -2.6952 0.3792 30 1 5.9449 -0.9151 0.3722 31 1 6.2834 -2.7702 2.7939 32 1 7.3150 -1.3855 2.2967 33 1 3.0240 -0.3121 2.0781 34 1 3.0818 -1.8693 2.9572 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260367391.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:36 Heat of formation + Delta-G solvation = -0.526506 kcal Electronic energy + Delta-G solvation = -14525.185479 eV Core-core repulsion = 12355.939128 eV Total energy + Delta-G solvation = -2169.246350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.79821 -35.70875 -32.69363 -30.31750 -27.76547 -25.62271 -24.32883 -23.47505 -21.31906 -19.08614 -18.53106 -17.00386 -16.00108 -15.11168 -14.76247 -14.47678 -13.83420 -13.34014 -12.98610 -12.49674 -12.24848 -11.93455 -11.71844 -11.44631 -11.34248 -11.22782 -11.09521 -10.75818 -10.49088 -10.01264 -9.82062 -9.66786 -9.54113 -9.19553 -9.09009 -8.86305 -8.51969 -7.23248 -6.12125 -4.09646 2.40850 2.93504 3.25504 3.36362 3.40632 4.37957 5.06235 5.14198 5.22097 5.34192 5.40357 5.43355 5.59494 5.68789 5.78178 5.85597 5.98030 6.12482 6.16369 6.21770 6.32775 6.38279 6.43498 6.62815 6.69958 6.77776 6.83916 6.93975 7.08292 7.22952 7.41016 7.72351 8.48172 8.94026 9.51314 11.01145 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.014872 C = 0.010003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.774222 B = 1882.301245 C = 2798.434886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.077 3.923 3 Si 0.856 3.144 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.254 1.254 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.040 0.960 11 C -0.088 4.088 12 C -0.145 4.145 13 C -0.151 4.151 14 C -0.117 4.117 15 C -0.085 4.085 16 H 0.066 0.934 17 C -0.120 4.120 18 C -0.063 4.063 19 S -0.353 6.353 20 C -0.030 4.030 21 H 0.263 0.737 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.798 -3.347 -0.908 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.125 4.125 3 Si 0.683 3.317 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.179 1.179 7 C -0.540 4.540 8 H 0.091 0.909 9 C 0.010 3.990 10 H 0.058 0.942 11 C -0.107 4.107 12 C -0.182 4.182 13 C -0.189 4.189 14 C -0.154 4.154 15 C -0.105 4.105 16 H 0.085 0.915 17 C -0.159 4.159 18 C -0.211 4.211 19 S -0.128 6.128 20 C -0.177 4.177 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.801 -2.385 -0.029 11.062 hybrid contribution 0.082 0.110 -0.835 0.846 sum 10.883 -2.275 -0.863 11.152 Atomic orbital electron populations 1.69894 1.06257 1.26915 1.50422 1.25033 0.94550 0.98475 0.94474 0.87208 0.80897 0.84417 0.79147 1.20155 1.21670 1.17893 1.20863 0.89177 0.94482 1.49519 0.90936 1.19350 0.96379 0.94576 0.88725 0.94209 1.22579 0.92707 0.99390 0.95996 1.23177 0.97802 1.00806 0.96441 1.22935 0.99002 1.00506 0.96429 1.22671 0.95146 1.01139 0.96451 1.21764 0.92112 1.00307 0.96337 0.91543 1.22657 0.95860 1.02848 0.94534 1.24313 0.99615 0.99558 0.97616 1.87618 1.10603 1.55194 1.59353 1.24088 0.93447 1.04090 0.96054 0.92656 0.90792 0.90929 0.92672 0.91179 0.92736 0.92204 0.90786 0.90861 0.90736 0.89990 0.88821 0.87084 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.08 5.26 -17.82 -0.09 1.98 16 3 Si 0.86 20.80 25.68 -169.99 -4.37 16.43 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.25 -6.02 6.46 56.52 0.37 -5.66 16 7 C -0.50 -12.82 7.12 -34.44 -0.25 -13.07 16 8 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 9 C 0.03 0.62 0.97 -91.77 -0.09 0.53 16 10 H 0.04 0.89 4.47 -51.93 -0.23 0.66 16 11 C -0.09 -1.64 2.95 -89.81 -0.27 -1.90 16 12 C -0.14 -2.27 5.57 -25.83 -0.14 -2.42 16 13 C -0.15 -2.32 8.09 -25.83 -0.21 -2.53 16 14 C -0.12 -2.20 7.15 -25.92 -0.19 -2.39 16 15 C -0.08 -1.59 2.28 -90.28 -0.21 -1.79 16 16 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 17 C -0.12 -1.87 4.27 -25.62 -0.11 -1.98 16 18 C -0.06 -0.92 7.53 38.30 0.29 -0.63 16 19 S -0.35 -6.52 23.24 -107.50 -2.50 -9.01 16 20 C -0.03 -0.59 6.41 37.52 0.24 -0.35 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.07 1.17 7.29 -51.92 -0.38 0.79 16 24 H 0.05 0.76 7.51 -51.93 -0.39 0.37 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 29 H 0.07 1.00 7.31 -51.93 -0.38 0.62 16 30 H 0.07 1.21 6.42 -51.93 -0.33 0.88 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.11 2.54 5.03 -51.92 -0.26 2.27 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 268.79 15.07 4.05 4.05 Total: -1.00 -27.55 268.79 -8.43 -35.98 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.37 Total: 2.62 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -1.02 Total: -24.54 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.77 Total: -25.53 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.37 Total: 16.43 kcal Atomic # 16 Polarization: -6.52 SS G_CDS: -2.50 Total: -9.01 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.55 -8.43 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367391.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.457 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds