Wall clock time and date at job start Mon Mar 30 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48511 * 109.46847 * 264.88876 * 3 2 1 5 5 H 1.48503 * 109.47162 * 24.88174 * 3 2 1 6 6 H 1.48493 * 109.47485 * 144.88575 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99714 * 353.12614 * 7 2 1 9 9 C 1.50704 * 120.00041 * 173.13188 * 7 2 1 10 10 H 1.09000 * 109.47034 * 1.21915 * 9 7 2 11 11 C 1.52999 * 109.46937 * 241.22102 * 9 7 2 12 12 C 1.53773 * 113.61700 * 159.13503 * 11 9 7 13 13 C 1.53951 * 87.02227 * 220.05037 * 12 11 9 14 14 C 1.53781 * 87.11147 * 25.36263 * 13 12 11 15 15 C 1.52998 * 109.47031 * 121.21811 * 9 7 2 16 16 H 1.09009 * 108.72910 * 63.95885 * 15 9 7 17 17 C 1.52945 * 108.88504 * 182.46050 * 15 9 7 18 18 C 1.55150 * 108.95787 * 150.89673 * 17 15 9 19 19 S 1.84207 * 100.96393 * 318.62296 * 18 17 15 20 20 C 1.53701 * 108.89235 * 305.44716 * 15 9 7 21 21 H 0.96998 * 119.99963 * 0.02562 * 1 2 3 22 22 H 1.08996 * 112.84740 * 290.33411 * 11 9 7 23 23 H 1.09010 * 113.61342 * 334.56931 * 12 11 9 24 24 H 1.08995 * 113.61614 * 105.46529 * 12 11 9 25 25 H 1.09006 * 113.53331 * 270.80871 * 13 12 11 26 26 H 1.09002 * 113.74447 * 139.94443 * 13 12 11 27 27 H 1.08997 * 113.61078 * 220.09423 * 14 13 12 28 28 H 1.08991 * 113.61627 * 89.19206 * 14 13 12 29 29 H 1.09000 * 109.60419 * 270.83069 * 17 15 9 30 30 H 1.09005 * 109.60086 * 31.15218 * 17 15 9 31 31 H 1.09000 * 111.13430 * 76.47621 * 18 17 15 32 32 H 1.09002 * 111.12923 * 200.65306 * 18 17 15 33 33 H 1.09007 * 110.33913 * 355.25322 * 20 15 9 34 34 H 1.08998 * 110.34750 * 117.40180 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6047 1.9840 -1.3946 5 1 1.3967 2.6815 0.5891 6 1 3.4885 1.4739 0.8053 7 6 2.0046 -1.1940 0.0005 8 1 1.4704 -2.1259 0.1129 9 6 3.5035 -1.1988 -0.1555 10 1 3.8639 -0.1730 -0.2333 11 6 3.8820 -1.9697 -1.4217 12 6 5.2817 -1.6255 -1.9574 13 6 4.6687 -1.6855 -3.3683 14 6 3.3192 -1.3498 -2.7117 15 6 4.1408 -1.8723 1.0614 16 1 3.8279 -2.9162 1.0876 17 6 5.6625 -1.8151 0.9186 18 6 6.3006 -1.7829 2.3324 19 16 5.1633 -0.6252 3.2038 20 6 3.6430 -1.1716 2.3356 21 1 -0.4850 0.8400 -0.0004 22 1 3.6985 -3.0407 -1.3359 23 1 5.6258 -0.6311 -1.6727 24 1 6.0240 -2.4012 -1.7694 25 1 4.7017 -2.6792 -3.8153 26 1 5.0336 -0.9074 -4.0388 27 1 2.4795 -1.9034 -3.1319 28 1 3.1257 -0.2801 -2.6337 29 1 6.0126 -2.6952 0.3792 30 1 5.9449 -0.9151 0.3722 31 1 6.2834 -2.7702 2.7939 32 1 7.3150 -1.3855 2.2967 33 1 3.0240 -0.3121 2.0781 34 1 3.0818 -1.8693 2.9572 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260367391.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:36 Heat of formation + Delta-G solvation = -15.276328 kcal Electronic energy + Delta-G solvation = -14525.825079 eV Core-core repulsion = 12355.939128 eV Total energy + Delta-G solvation = -2169.885951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26256 -37.12776 -34.64975 -31.90237 -29.31880 -27.18154 -25.92018 -24.83144 -22.81798 -20.68806 -19.91756 -18.97857 -17.46457 -16.53433 -16.34547 -16.13204 -15.31767 -14.76401 -14.63447 -14.26695 -13.83836 -13.44558 -13.15897 -13.00339 -12.87967 -12.65300 -12.50200 -12.46127 -11.95738 -11.76441 -11.45566 -11.15125 -11.04434 -10.83637 -10.72896 -10.55588 -10.36258 -8.68403 -8.26162 -6.23327 1.06290 1.27449 1.34751 1.41544 1.52549 2.32993 3.10546 3.80281 3.87491 4.01603 4.04716 4.14733 4.24762 4.35250 4.36675 4.48944 4.68227 4.74553 4.89827 4.93823 5.00583 5.05173 5.10710 5.18147 5.21170 5.27239 5.28915 5.49563 5.62244 5.63187 5.76472 5.89356 6.38276 6.82452 7.39817 8.91327 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.014872 C = 0.010003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.774222 B = 1882.301245 C = 2798.434886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.025 3.975 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.299 1.299 6 H -0.244 1.244 7 C -0.483 4.483 8 H 0.034 0.966 9 C 0.030 3.970 10 H 0.029 0.971 11 C -0.095 4.095 12 C -0.129 4.129 13 C -0.134 4.134 14 C -0.135 4.135 15 C -0.081 4.081 16 H 0.068 0.932 17 C -0.114 4.114 18 C -0.044 4.044 19 S -0.386 6.386 20 C -0.033 4.033 21 H 0.260 0.740 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.556 -4.260 -1.512 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.171 4.171 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.227 1.227 6 H -0.167 1.167 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.011 3.989 10 H 0.048 0.952 11 C -0.113 4.113 12 C -0.166 4.166 13 C -0.171 4.171 14 C -0.173 4.173 15 C -0.102 4.102 16 H 0.086 0.914 17 C -0.153 4.153 18 C -0.191 4.191 19 S -0.161 6.161 20 C -0.181 4.181 21 H 0.070 0.930 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.595 -3.306 -0.636 14.978 hybrid contribution -1.115 0.293 -0.622 1.310 sum 13.480 -3.014 -1.258 13.870 Atomic orbital electron populations 1.70033 1.07974 1.27352 1.53748 1.25651 0.94930 1.01515 0.95048 0.86347 0.79945 0.80819 0.79373 1.19390 1.22662 1.16740 1.21099 0.91803 0.92443 1.46798 0.94810 1.19311 0.93149 0.94974 0.91488 0.95244 1.22553 0.95633 0.99036 0.94121 1.23071 0.96208 1.01728 0.95597 1.22875 0.95486 1.02048 0.96673 1.22725 0.97115 0.99369 0.98058 1.21700 0.94811 0.99589 0.94071 0.91400 1.22576 0.92795 1.04265 0.95646 1.24489 0.99456 0.99404 0.95767 1.87721 1.11069 1.57171 1.60112 1.23937 0.94246 1.02736 0.97199 0.93041 0.90398 0.91028 0.89434 0.89100 0.91353 0.93697 0.93351 0.87646 0.90934 0.87855 0.85932 0.90537 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 2 C 0.03 1.42 5.26 84.65 0.45 1.86 16 3 Si 0.91 44.24 25.68 68.60 1.76 46.00 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.24 -11.29 6.46 99.48 0.64 -10.65 16 7 C -0.48 -25.49 7.12 25.60 0.18 -25.30 16 8 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 9 C 0.03 1.26 0.97 -11.54 -0.01 1.25 16 10 H 0.03 1.29 4.47 -2.39 -0.01 1.28 16 11 C -0.09 -3.34 2.95 -10.27 -0.03 -3.37 16 12 C -0.13 -3.47 5.57 31.18 0.17 -3.29 16 13 C -0.13 -3.61 8.09 31.18 0.25 -3.35 16 14 C -0.13 -4.98 7.15 31.12 0.22 -4.76 16 15 C -0.08 -2.89 2.28 -10.58 -0.02 -2.92 16 16 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 17 C -0.11 -3.04 4.27 31.31 0.13 -2.90 16 18 C -0.04 -1.07 7.53 72.72 0.55 -0.52 16 19 S -0.39 -13.48 23.24 -56.49 -1.31 -14.79 16 20 C -0.03 -1.33 6.41 72.22 0.46 -0.87 16 21 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 22 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 23 H 0.07 1.98 7.29 -2.38 -0.02 1.97 16 24 H 0.09 1.85 7.51 -2.39 -0.02 1.83 16 25 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 29 H 0.11 2.21 7.31 -2.39 -0.02 2.19 16 30 H 0.07 2.01 6.42 -2.38 -0.02 2.00 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 3.57 5.03 -2.38 -0.01 3.56 16 34 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -62.71 268.79 4.10 -58.61 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.00 Total: 12.58 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 2.35 Total: -44.17 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.30 Total: -58.22 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.76 Total: 46.00 kcal Atomic # 16 Polarization: -13.48 SS G_CDS: -1.31 Total: -14.79 kcal Total: -62.71 4.10 -58.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367391.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.338 kcal (2) G-P(sol) polarization free energy of solvation -62.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds