Wall clock time and date at job start Mon Mar 30 2020 03:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99650 * 2 1 4 4 H 1.48500 * 109.47370 * 269.99989 * 3 2 1 5 5 H 1.48495 * 109.47359 * 30.00252 * 3 2 1 6 6 H 1.48500 * 109.46761 * 150.00074 * 3 2 1 7 7 C 1.37877 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99562 * 185.91901 * 7 2 1 9 9 C 1.50691 * 120.00379 * 5.91896 * 7 2 1 10 10 H 1.09006 * 109.47141 * 4.26456 * 9 7 2 11 11 C 1.52997 * 109.47096 * 244.26785 * 9 7 2 12 12 C 1.53778 * 113.61636 * 152.98713 * 11 9 7 13 13 C 1.53951 * 87.02094 * 220.04551 * 12 11 9 14 14 C 1.53781 * 113.61710 * 55.37586 * 11 9 7 15 15 C 1.52998 * 109.47568 * 124.26237 * 9 7 2 16 16 H 1.09001 * 110.69416 * 68.31386 * 15 9 7 17 17 C 1.54257 * 110.78752 * 305.00394 * 15 9 7 18 18 C 1.52334 * 112.59046 * 217.19307 * 17 15 9 19 19 C 1.54258 * 112.58168 * 359.97438 * 18 17 15 20 20 S 1.83950 * 110.78989 * 191.84082 * 15 9 7 21 21 H 0.97003 * 120.00268 * 359.97438 * 1 2 3 22 22 H 1.09001 * 112.84809 * 284.18010 * 11 9 7 23 23 H 1.08999 * 113.61740 * 334.56348 * 12 11 9 24 24 H 1.08997 * 113.61809 * 105.46705 * 12 11 9 25 25 H 1.08997 * 113.53710 * 270.80905 * 13 12 11 26 26 H 1.09000 * 113.74755 * 139.94349 * 13 12 11 27 27 H 1.08991 * 113.61651 * 254.52708 * 14 11 9 28 28 H 1.09000 * 113.61512 * 25.35210 * 14 11 9 29 29 H 1.08998 * 108.87070 * 338.01477 * 17 15 9 30 30 H 1.09004 * 108.87229 * 96.51979 * 17 15 9 31 31 H 1.08996 * 108.86649 * 120.81327 * 18 17 15 32 32 H 1.08994 * 108.87018 * 239.32765 * 18 17 15 33 33 H 1.09008 * 110.78378 * 142.79875 * 19 18 17 34 34 H 1.08998 * 110.79062 * 266.05917 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0803 -1.1965 0.0959 9 6 1.2572 -2.4956 -0.1357 10 1 0.1986 -2.2917 -0.2969 11 6 1.4291 -3.3176 1.1432 12 6 0.2654 -4.2855 1.4145 13 6 0.3941 -3.8971 2.8987 14 6 1.0042 -2.5698 2.4180 15 6 1.8121 -3.2813 -1.3255 16 1 2.8271 -3.6226 -1.1220 17 6 1.7680 -2.4307 -2.6116 18 6 1.4188 -3.2532 -3.8454 19 6 1.1918 -4.7437 -3.5190 20 16 0.7134 -4.6963 -1.7430 21 1 -0.4851 0.8401 0.0004 22 1 2.4114 -3.7841 1.2176 23 1 -0.6760 -3.9743 0.9618 24 1 0.5089 -5.3286 1.2126 25 1 1.0928 -4.5232 3.4535 26 1 -0.5633 -3.7791 3.4061 27 1 1.8432 -2.2299 3.0250 28 1 0.2662 -1.7877 2.2399 29 1 1.0227 -1.6449 -2.4893 30 1 2.7440 -1.9694 -2.7628 31 1 0.5117 -2.8481 -4.2939 32 1 2.2335 -3.1726 -4.5650 33 1 0.3845 -5.1539 -4.1258 34 1 2.1091 -5.3149 -3.6611 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:00 Heat of formation + Delta-G solvation = -4.044653 kcal Electronic energy + Delta-G solvation = -14301.796470 eV Core-core repulsion = 12132.397562 eV Total energy + Delta-G solvation = -2169.398909 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.04472 -35.49841 -32.96798 -30.67021 -26.90658 -25.00220 -24.15131 -23.86051 -20.73097 -19.17486 -18.29466 -16.56830 -15.68783 -14.98249 -14.59935 -14.28581 -13.81986 -13.34009 -12.99159 -12.23735 -11.90932 -11.77017 -11.34703 -11.26068 -11.02245 -10.95816 -10.79947 -10.59088 -10.51325 -9.94921 -9.69610 -9.55214 -9.17661 -9.01391 -8.91995 -8.65147 -8.38546 -6.95442 -6.05283 -4.07104 2.63974 3.20453 3.27843 3.35149 3.38449 4.40485 5.18942 5.24054 5.27099 5.58904 5.68049 5.71482 5.78111 5.87857 5.94650 6.05113 6.12948 6.23685 6.40305 6.42794 6.59415 6.74637 6.81306 6.82799 6.93354 7.09417 7.12678 7.30505 7.41321 7.65448 7.82449 7.96056 8.36623 9.03726 9.54470 11.02370 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.013303 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.707992 B = 2104.275332 C = 3194.407424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.072 3.928 3 Si 0.883 3.117 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.083 0.917 11 C -0.092 4.092 12 C -0.133 4.133 13 C -0.153 4.153 14 C -0.109 4.109 15 C 0.006 3.994 16 H 0.069 0.931 17 C -0.110 4.110 18 C -0.124 4.124 19 C -0.073 4.073 20 S -0.333 6.333 21 H 0.262 0.738 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -5.647 -2.966 6.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.036 3.964 10 H 0.101 0.899 11 C -0.110 4.110 12 C -0.171 4.171 13 C -0.191 4.191 14 C -0.146 4.146 15 C -0.122 4.122 16 H 0.087 0.913 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.222 4.222 20 S -0.105 6.105 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.981 -6.233 -2.327 6.725 hybrid contribution 1.362 1.549 -0.738 2.191 sum 2.343 -4.684 -3.065 6.068 Atomic orbital electron populations 1.69916 1.05777 1.26607 1.50026 1.24897 0.94732 0.98817 0.94604 0.86733 0.80096 0.83922 0.78124 1.20693 1.21309 1.19907 1.20871 0.93180 0.89868 1.49980 0.92989 1.19019 1.00037 0.91258 0.86043 0.89894 1.22582 0.95577 0.95384 0.97497 1.22949 1.00306 0.98596 0.95270 1.22941 0.99852 0.99526 0.96756 1.22641 1.00005 0.95506 0.96474 1.24438 0.97065 0.90811 0.99893 0.91310 1.21925 1.03080 0.99091 0.90846 1.22075 1.01621 0.93193 0.99415 1.24008 1.03098 0.99115 0.95936 1.87923 1.62787 1.49945 1.09871 0.92852 0.92224 0.90556 0.93118 0.91875 0.92977 0.93525 0.89133 0.89466 0.91910 0.91612 0.92268 0.89258 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.03 12.63 55.43 0.70 -23.33 16 2 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 3 Si 0.88 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.50 -12.58 6.67 -34.44 -0.23 -12.81 16 8 H 0.05 1.33 7.82 -52.48 -0.41 0.92 16 9 C 0.06 1.32 1.43 -91.78 -0.13 1.18 16 10 H 0.08 2.21 6.66 -51.93 -0.35 1.87 16 11 C -0.09 -1.97 3.08 -89.81 -0.28 -2.25 16 12 C -0.13 -2.65 6.32 -25.83 -0.16 -2.82 16 13 C -0.15 -2.82 8.09 -25.83 -0.21 -3.02 16 14 C -0.11 -2.31 6.96 -25.92 -0.18 -2.49 16 15 C 0.01 0.12 2.84 -26.07 -0.07 0.05 16 16 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 17 C -0.11 -2.15 5.18 -26.41 -0.14 -2.29 16 18 C -0.12 -1.99 6.30 -26.41 -0.17 -2.15 16 19 C -0.07 -1.14 7.46 37.82 0.28 -0.85 16 20 S -0.33 -6.46 21.29 -107.50 -2.29 -8.75 16 21 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 22 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 23 H 0.08 1.63 7.90 -51.93 -0.41 1.22 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.09 2.17 8.10 -51.93 -0.42 1.75 16 29 H 0.09 1.97 7.60 -51.93 -0.39 1.57 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 280.48 15.07 4.23 4.23 Total: -1.00 -25.78 280.48 -9.53 -35.31 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.77 Total: 2.89 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -1.38 Total: -25.68 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.70 Total: -23.33 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -2.29 Total: -8.75 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -25.78 -9.53 -35.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.264 kcal (2) G-P(sol) polarization free energy of solvation -25.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds