Wall clock time and date at job start Mon Mar 30 2020 03:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46611 * 2 1 4 4 C 1.50701 * 109.47011 * 240.00161 * 2 1 3 5 5 H 1.07996 * 119.99970 * 266.44407 * 4 2 1 6 6 C 1.37882 * 119.99889 * 86.44145 * 4 2 1 7 7 N 1.31513 * 119.99973 * 354.87609 * 6 4 2 8 8 Si 1.86799 * 119.99836 * 174.88006 * 6 4 2 9 9 H 1.48496 * 109.47044 * 270.00350 * 8 6 4 10 10 H 1.48500 * 109.47077 * 30.00114 * 8 6 4 11 11 H 1.48497 * 109.46913 * 149.99885 * 8 6 4 12 12 C 1.53000 * 109.46999 * 120.00157 * 2 1 3 13 13 H 1.08994 * 115.54912 * 80.30834 * 12 2 1 14 14 C 1.53012 * 117.49813 * 294.63319 * 12 2 1 15 15 C 1.52937 * 117.49219 * 225.97794 * 12 2 1 16 16 C 1.52782 * 117.76239 * 359.87850 * 15 12 2 17 17 C 1.52610 * 110.47238 * 278.92259 * 16 15 12 18 18 C 1.52962 * 110.26173 * 293.06304 * 17 16 15 19 19 S 1.81698 * 109.10257 * 65.66095 * 18 17 16 20 20 C 1.53351 * 117.40633 * 214.83534 * 15 12 2 21 21 H 1.09003 * 109.47104 * 178.72367 * 1 2 3 22 22 H 1.09002 * 109.46702 * 298.72148 * 1 2 3 23 23 H 1.09003 * 109.47031 * 58.72108 * 1 2 3 24 24 H 0.97001 * 120.00368 * 354.33715 * 7 6 4 25 25 H 1.09004 * 117.49936 * 0.02562 * 14 12 2 26 26 H 1.08996 * 117.49607 * 145.00489 * 14 12 2 27 27 H 1.09000 * 109.30662 * 39.22607 * 16 15 12 28 28 H 1.09001 * 109.30340 * 158.62141 * 16 15 12 29 29 H 1.08989 * 109.34228 * 172.81743 * 17 16 15 30 30 H 1.09006 * 109.20642 * 53.21553 * 17 16 15 31 31 H 1.08998 * 109.52829 * 305.76960 * 18 17 16 32 32 H 1.08999 * 109.52743 * 185.54790 * 18 17 16 33 33 H 1.09003 * 109.67182 * 207.43271 * 20 15 12 34 34 H 1.09001 * 109.68002 * 327.96616 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2671 -1.7637 -1.1879 6 6 2.1923 -0.0155 -2.4107 7 7 1.8122 1.2409 -2.4907 8 14 2.9487 -0.8589 -3.8959 9 1 4.4216 -0.6712 -3.8748 10 1 2.6340 -2.3096 -3.8550 11 1 2.3918 -0.2665 -5.1384 12 6 2.0400 -0.7213 1.2492 13 1 2.0407 -1.8099 1.1961 14 6 1.7422 -0.0802 2.6063 15 6 3.1642 -0.0522 2.0413 16 6 3.6985 1.2841 1.5283 17 6 4.6993 1.0604 0.3981 18 6 5.9567 0.3725 0.9324 19 16 5.5248 -1.2989 1.4992 20 6 4.2028 -0.9664 2.7026 21 1 -0.3633 -1.0274 -0.0229 22 1 -0.3633 0.4939 0.9013 23 1 -0.3633 0.5336 -0.8783 24 1 1.3452 1.6546 -1.7479 25 1 1.1825 0.8552 2.6090 26 1 1.5469 -0.7472 3.4459 27 1 2.8682 1.8868 1.1602 28 1 4.1897 1.8132 2.3450 29 1 4.9714 2.0212 -0.0386 30 1 4.2419 0.4327 -0.3668 31 1 6.3601 0.9473 1.7661 32 1 6.7013 0.3073 0.1391 33 1 4.6207 -0.4726 3.5799 34 1 3.7314 -1.9037 2.9983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260546434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:55 Heat of formation + Delta-G solvation = -3.316606 kcal Electronic energy + Delta-G solvation = -14543.285673 eV Core-core repulsion = 12373.918335 eV Total energy + Delta-G solvation = -2169.367338 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.75081 -34.13583 -33.19930 -30.21268 -27.70167 -26.84622 -24.88433 -22.38767 -21.57836 -19.71040 -18.07563 -16.75452 -16.11956 -15.02518 -14.15754 -14.06840 -13.65364 -13.21333 -13.13711 -12.77217 -12.46782 -12.07287 -11.46947 -11.35852 -11.11813 -11.03807 -10.93289 -10.64178 -10.59665 -10.35938 -10.07653 -9.65135 -9.25708 -9.11862 -8.69714 -8.30794 -8.21149 -7.19446 -6.25885 -3.95083 2.20101 2.91228 3.48912 3.50888 3.66943 4.43507 4.59304 5.04108 5.22280 5.28071 5.34288 5.43780 5.47823 5.65723 5.76665 5.79059 5.90669 6.15157 6.19955 6.27857 6.29704 6.46696 6.53732 6.60229 6.73425 6.75099 6.97273 7.12117 7.17118 7.47316 7.70157 8.33744 8.55896 8.97137 9.73032 11.11750 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.012393 C = 0.009803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.817071 B = 2258.783764 C = 2855.670472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.573 4.573 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.917 5.917 8 Si 1.059 2.941 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.288 1.288 12 C -0.081 4.081 13 H 0.089 0.911 14 C -0.187 4.187 15 C -0.135 4.135 16 C -0.076 4.076 17 C -0.128 4.128 18 C -0.071 4.071 19 S -0.270 6.270 20 C -0.033 4.033 21 H 0.035 0.965 22 H 0.016 0.984 23 H 0.043 0.957 24 H 0.269 0.731 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 -0.808 8.832 9.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.030 3.970 3 H 0.058 0.942 4 C -0.611 4.611 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.889 3.111 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.214 1.214 12 C -0.100 4.100 13 H 0.107 0.893 14 C -0.226 4.226 15 C -0.136 4.136 16 C -0.113 4.113 17 C -0.167 4.167 18 C -0.219 4.219 19 S -0.042 6.042 20 C -0.181 4.181 21 H 0.054 0.946 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.440 -1.554 6.952 8.963 hybrid contribution -1.014 0.807 2.036 2.414 sum 4.426 -0.748 8.988 10.046 Atomic orbital electron populations 1.21902 0.99752 0.99411 0.98100 1.18613 0.91057 0.96289 0.91081 0.94161 1.21875 1.46864 0.97297 0.95111 0.93400 1.25618 0.96241 0.95805 1.00495 1.70762 1.37295 1.12277 1.35070 0.83681 0.76527 0.74999 0.75939 1.21452 1.21533 1.21401 1.22617 0.97231 0.98420 0.91723 0.89291 1.23189 0.97215 1.03132 0.99066 1.21475 0.89076 0.97755 1.05318 1.20886 0.99031 0.94545 0.96826 1.21769 0.93634 1.01473 0.99803 1.23336 1.01155 0.94554 1.02892 1.86577 1.46984 1.15001 1.55659 1.22894 0.96071 1.01940 0.97232 0.94557 0.96505 0.93776 0.92011 0.89434 0.90069 0.90771 0.93405 0.91857 0.86997 0.91048 0.88470 0.90678 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.98 37.16 0.33 -2.67 16 2 C 0.05 1.13 1.41 -91.77 -0.13 1.00 16 3 H 0.04 1.00 4.41 -51.93 -0.23 0.77 16 4 C -0.57 -15.27 7.24 -34.44 -0.25 -15.52 16 5 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 6 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 7 N -0.92 -26.50 13.56 55.43 0.75 -25.75 16 8 Si 1.06 25.15 29.91 -169.99 -5.08 20.06 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 C -0.08 -1.65 4.75 -90.65 -0.43 -2.08 16 13 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 14 C -0.19 -3.16 9.22 -26.70 -0.25 -3.40 16 15 C -0.13 -2.38 1.85 -154.45 -0.29 -2.66 16 16 C -0.08 -1.34 4.61 -27.04 -0.12 -1.46 16 17 C -0.13 -2.38 5.65 -26.95 -0.15 -2.53 16 18 C -0.07 -1.15 6.41 37.14 0.24 -0.91 16 19 S -0.27 -4.70 22.33 -107.50 -2.40 -7.10 16 20 C -0.03 -0.53 6.18 37.34 0.23 -0.30 16 21 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.02 0.32 7.62 -51.93 -0.40 -0.07 16 23 H 0.04 1.06 7.59 -51.93 -0.39 0.66 16 24 H 0.27 7.71 6.27 -40.82 -0.26 7.46 16 25 H 0.09 1.48 7.94 -51.93 -0.41 1.06 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.43 6.30 -51.93 -0.33 1.10 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.12 8.14 -51.94 -0.42 0.70 16 30 H 0.11 2.56 6.59 -51.93 -0.34 2.22 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.45 8.12 -51.93 -0.42 1.03 16 LS Contribution 276.67 15.07 4.17 4.17 Total: -1.00 -27.70 276.67 -8.84 -36.54 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.37 Total: 2.11 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -0.91 Total: -30.04 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.75 Total: -25.75 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.06 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.40 Total: -7.10 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.70 -8.84 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.222 kcal (2) G-P(sol) polarization free energy of solvation -27.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds