Wall clock time and date at job start Mon Mar 30 2020 03:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46611 * 2 1 4 4 C 1.50701 * 109.47011 * 240.00161 * 2 1 3 5 5 H 1.07996 * 119.99970 * 266.44407 * 4 2 1 6 6 C 1.37882 * 119.99889 * 86.44145 * 4 2 1 7 7 N 1.31513 * 119.99973 * 354.87609 * 6 4 2 8 8 Si 1.86799 * 119.99836 * 174.88006 * 6 4 2 9 9 H 1.48496 * 109.47044 * 270.00350 * 8 6 4 10 10 H 1.48500 * 109.47077 * 30.00114 * 8 6 4 11 11 H 1.48497 * 109.46913 * 149.99885 * 8 6 4 12 12 C 1.53000 * 109.46999 * 120.00157 * 2 1 3 13 13 H 1.08994 * 115.54912 * 80.30834 * 12 2 1 14 14 C 1.53012 * 117.49813 * 294.63319 * 12 2 1 15 15 C 1.52937 * 117.49219 * 225.97794 * 12 2 1 16 16 C 1.52782 * 117.76239 * 359.87850 * 15 12 2 17 17 C 1.52610 * 110.47238 * 278.92259 * 16 15 12 18 18 C 1.52962 * 110.26173 * 293.06304 * 17 16 15 19 19 S 1.81698 * 109.10257 * 65.66095 * 18 17 16 20 20 C 1.53351 * 117.40633 * 214.83534 * 15 12 2 21 21 H 1.09003 * 109.47104 * 178.72367 * 1 2 3 22 22 H 1.09002 * 109.46702 * 298.72148 * 1 2 3 23 23 H 1.09003 * 109.47031 * 58.72108 * 1 2 3 24 24 H 0.97001 * 120.00368 * 354.33715 * 7 6 4 25 25 H 1.09004 * 117.49936 * 0.02562 * 14 12 2 26 26 H 1.08996 * 117.49607 * 145.00489 * 14 12 2 27 27 H 1.09000 * 109.30662 * 39.22607 * 16 15 12 28 28 H 1.09001 * 109.30340 * 158.62141 * 16 15 12 29 29 H 1.08989 * 109.34228 * 172.81743 * 17 16 15 30 30 H 1.09006 * 109.20642 * 53.21553 * 17 16 15 31 31 H 1.08998 * 109.52829 * 305.76960 * 18 17 16 32 32 H 1.08999 * 109.52743 * 185.54790 * 18 17 16 33 33 H 1.09003 * 109.67182 * 207.43271 * 20 15 12 34 34 H 1.09001 * 109.68002 * 327.96616 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2671 -1.7637 -1.1879 6 6 2.1923 -0.0155 -2.4107 7 7 1.8122 1.2409 -2.4907 8 14 2.9487 -0.8589 -3.8959 9 1 4.4216 -0.6712 -3.8748 10 1 2.6340 -2.3096 -3.8550 11 1 2.3918 -0.2665 -5.1384 12 6 2.0400 -0.7213 1.2492 13 1 2.0407 -1.8099 1.1961 14 6 1.7422 -0.0802 2.6063 15 6 3.1642 -0.0522 2.0413 16 6 3.6985 1.2841 1.5283 17 6 4.6993 1.0604 0.3981 18 6 5.9567 0.3725 0.9324 19 16 5.5248 -1.2989 1.4992 20 6 4.2028 -0.9664 2.7026 21 1 -0.3633 -1.0274 -0.0229 22 1 -0.3633 0.4939 0.9013 23 1 -0.3633 0.5336 -0.8783 24 1 1.3452 1.6546 -1.7479 25 1 1.1825 0.8552 2.6090 26 1 1.5469 -0.7472 3.4459 27 1 2.8682 1.8868 1.1602 28 1 4.1897 1.8132 2.3450 29 1 4.9714 2.0212 -0.0386 30 1 4.2419 0.4327 -0.3668 31 1 6.3601 0.9473 1.7661 32 1 6.7013 0.3073 0.1391 33 1 4.6207 -0.4726 3.5799 34 1 3.7314 -1.9037 2.9983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260546434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:55 Heat of formation + Delta-G solvation = -16.483640 kcal Electronic energy + Delta-G solvation = -14543.856638 eV Core-core repulsion = 12373.918335 eV Total energy + Delta-G solvation = -2169.938304 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24891 -35.95022 -34.78705 -32.05857 -29.10629 -28.19839 -26.90227 -24.16641 -22.99669 -21.31869 -19.66544 -18.67911 -17.50825 -16.57444 -15.79144 -15.52256 -15.47389 -14.80942 -14.48155 -14.26044 -13.93910 -13.69180 -13.30330 -13.05516 -12.79911 -12.53559 -12.49629 -12.39162 -12.31624 -11.97466 -11.86956 -11.22405 -10.82927 -10.74750 -10.43419 -10.15378 -10.06107 -8.54780 -8.44421 -6.12188 0.90809 1.53391 1.59509 1.62404 1.76797 2.60979 2.99521 3.34188 3.65810 3.84319 3.95894 4.00272 4.07848 4.25726 4.44007 4.54938 4.57713 4.67734 4.74328 4.79954 4.86338 4.89846 4.91593 5.01070 5.11648 5.14417 5.35319 5.41909 5.56777 5.62275 5.85143 6.28114 6.39800 6.83734 7.60896 8.94033 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.012393 C = 0.009803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.817071 B = 2258.783764 C = 2855.670472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.049 3.951 3 H 0.024 0.976 4 C -0.572 4.572 5 H 0.030 0.970 6 C -0.021 4.021 7 N -0.942 5.942 8 Si 1.094 2.906 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.288 1.288 12 C -0.112 4.112 13 H 0.075 0.925 14 C -0.158 4.158 15 C -0.128 4.128 16 C -0.074 4.074 17 C -0.125 4.125 18 C -0.060 4.060 19 S -0.310 6.310 20 C -0.023 4.023 21 H 0.035 0.965 22 H 0.043 0.957 23 H 0.018 0.982 24 H 0.259 0.741 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -0.899 10.765 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.031 3.969 3 H 0.042 0.958 4 C -0.610 4.610 5 H 0.049 0.951 6 C -0.219 4.219 7 N -0.580 5.580 8 Si 0.919 3.081 9 H -0.204 1.204 10 H -0.204 1.204 11 H -0.214 1.214 12 C -0.130 4.130 13 H 0.093 0.907 14 C -0.197 4.197 15 C -0.129 4.129 16 C -0.112 4.112 17 C -0.164 4.164 18 C -0.208 4.208 19 S -0.083 6.083 20 C -0.171 4.171 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.128 0.872 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.198 -1.657 8.898 10.970 hybrid contribution -1.272 0.828 1.458 2.104 sum 4.925 -0.830 10.356 11.498 Atomic orbital electron populations 1.21781 0.99185 0.99228 0.98197 1.18487 0.91422 0.95354 0.91650 0.95772 1.22098 1.45896 0.96509 0.96530 0.95148 1.26629 0.96501 0.95818 1.02931 1.70857 1.39016 1.13175 1.34973 0.83215 0.76485 0.74803 0.73594 1.20417 1.20401 1.21409 1.22287 1.01083 0.97439 0.92233 0.90669 1.23242 0.96191 1.02971 0.97331 1.21544 0.89779 0.97433 1.04162 1.20868 0.98274 0.94691 0.97322 1.21639 0.94868 1.00809 0.99115 1.23315 0.99899 0.93509 1.04046 1.86756 1.47977 1.16721 1.56818 1.22952 0.94747 1.02222 0.97154 0.94632 0.93843 0.96290 0.93032 0.89175 0.87165 0.92999 0.90353 0.91643 0.91768 0.88083 0.87913 0.87765 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.98 71.98 0.65 -5.04 16 2 C 0.05 2.34 1.41 -11.54 -0.02 2.32 16 3 H 0.02 1.24 4.41 -2.39 -0.01 1.22 16 4 C -0.57 -31.19 7.24 25.60 0.19 -31.01 16 5 H 0.03 1.72 7.82 -2.91 -0.02 1.70 16 6 C -0.02 -1.15 5.45 84.66 0.46 -0.69 16 7 N -0.94 -55.83 13.56 21.45 0.29 -55.54 16 8 Si 1.09 51.39 29.91 68.60 2.05 53.44 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 C -0.11 -4.42 4.75 -10.81 -0.05 -4.47 16 13 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 14 C -0.16 -4.86 9.22 30.61 0.28 -4.58 16 15 C -0.13 -4.20 1.85 -52.14 -0.10 -4.30 16 16 C -0.07 -2.50 4.61 30.39 0.14 -2.36 16 17 C -0.13 -4.57 5.65 30.45 0.17 -4.39 16 18 C -0.06 -1.80 6.41 71.97 0.46 -1.34 16 19 S -0.31 -10.24 22.33 -56.49 -1.26 -11.51 16 20 C -0.02 -0.66 6.18 72.10 0.45 -0.21 16 21 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 22 H 0.04 1.68 7.62 -2.39 -0.02 1.66 16 23 H 0.02 0.90 7.59 -2.39 -0.02 0.88 16 24 H 0.26 15.41 6.27 -92.71 -0.58 14.83 16 25 H 0.09 2.75 7.94 -2.39 -0.02 2.74 16 26 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.05 1.97 6.30 -2.39 -0.02 1.96 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 2.99 6.59 -2.38 -0.02 2.97 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 2.81 8.12 -2.39 -0.02 2.80 16 Total: -1.00 -60.56 276.67 4.96 -55.60 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.25 Total: 14.07 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 2.63 Total: -56.06 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.29 Total: -55.54 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Atomic # 16 Polarization: -10.24 SS G_CDS: -1.26 Total: -11.51 kcal Total: -60.56 4.96 -55.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.116 kcal (2) G-P(sol) polarization free energy of solvation -60.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds