Wall clock time and date at job start Mon Mar 30 2020 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47170 * 269.99935 * 3 2 1 5 5 H 1.48501 * 109.47137 * 29.99645 * 3 2 1 6 6 H 1.48492 * 109.46903 * 149.99697 * 3 2 1 7 7 C 1.37875 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99900 * 0.27698 * 7 2 1 10 10 H 1.08995 * 109.46926 * 299.72421 * 9 7 2 11 11 C 1.53001 * 109.47123 * 59.72299 * 9 7 2 12 12 C 1.52991 * 117.50254 * 254.21255 * 11 9 7 13 13 C 1.52995 * 117.50000 * 185.54860 * 11 9 7 14 14 C 1.53001 * 109.46956 * 179.72533 * 9 7 2 15 15 H 1.09000 * 109.57242 * 293.68537 * 14 9 7 16 16 C 1.53092 * 109.57848 * 54.07422 * 14 9 7 17 17 C 1.52575 * 109.95710 * 182.83099 * 16 14 9 18 18 C 1.52580 * 110.72759 * 289.32574 * 17 16 14 19 19 C 1.53104 * 109.95656 * 70.67714 * 18 17 16 20 20 S 1.81748 * 108.83884 * 296.97618 * 19 18 17 21 21 H 0.96994 * 119.99931 * 0.02562 * 1 2 3 22 22 H 1.09002 * 115.54840 * 39.88303 * 11 9 7 23 23 H 1.09008 * 117.49686 * 0.02562 * 12 11 9 24 24 H 1.09002 * 117.50339 * 145.01913 * 12 11 9 25 25 H 1.08998 * 117.50049 * 214.97773 * 13 11 9 26 26 H 1.08993 * 117.49912 * 359.97438 * 13 11 9 27 27 H 1.09000 * 109.39084 * 302.98395 * 16 14 9 28 28 H 1.09003 * 109.38789 * 62.68337 * 16 14 9 29 29 H 1.09002 * 109.22979 * 169.00640 * 17 16 14 30 30 H 1.08998 * 109.19096 * 49.62591 * 17 16 14 31 31 H 1.09003 * 109.39108 * 310.52993 * 18 17 16 32 32 H 1.09005 * 109.31401 * 190.76918 * 18 17 16 33 33 H 1.09000 * 109.57766 * 177.17016 * 19 18 17 34 34 H 1.08999 * 109.68002 * 56.84049 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 -0.0052 10 1 0.6244 -2.5608 0.8845 11 6 0.3714 -2.5747 -1.2548 12 6 -1.1349 -2.3798 -1.0713 13 6 -0.5749 -3.7702 -1.3813 14 6 2.2453 -3.6621 -0.0102 15 1 2.7962 -3.6674 -0.9508 16 6 3.2219 -3.5071 1.1585 17 6 4.2607 -4.6240 1.1208 18 6 3.6276 -5.9629 1.4873 19 6 2.7024 -6.4295 0.3601 20 16 1.3480 -5.2313 0.1786 21 1 -0.4850 0.8400 -0.0004 22 1 0.8209 -2.1896 -2.1701 23 1 -1.4993 -2.1972 -0.0603 24 1 -1.6765 -1.8667 -1.8660 25 1 -0.7484 -4.1713 -2.3799 26 1 -0.5705 -4.5031 -0.5746 27 1 3.7245 -2.5427 1.0847 28 1 2.6721 -3.5559 2.0984 29 1 5.0572 -4.3976 1.8296 30 1 4.6811 -4.6885 0.1172 31 1 3.0512 -5.8514 2.4057 32 1 4.4129 -6.7032 1.6405 33 1 2.2928 -7.4093 0.6058 34 1 3.2628 -6.4913 -0.5728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:48 Heat of formation + Delta-G solvation = 0.898082 kcal Electronic energy + Delta-G solvation = -14271.706625 eV Core-core repulsion = 12102.522049 eV Total energy + Delta-G solvation = -2169.184575 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.23705 -35.89997 -32.75300 -31.42558 -28.23643 -25.47504 -23.66337 -21.46610 -20.90360 -20.01692 -18.92759 -16.83303 -15.78292 -14.73277 -14.41564 -14.12472 -13.88313 -13.35837 -13.08793 -12.75514 -12.31896 -11.98953 -11.68147 -11.02119 -10.97653 -10.93501 -10.74226 -10.48110 -10.28890 -10.17418 -9.75460 -9.57433 -9.36155 -9.04025 -8.59222 -8.31800 -8.20551 -6.87427 -5.97133 -4.05113 2.49613 3.29571 3.34120 3.37305 3.40452 4.43699 5.04750 5.16388 5.26119 5.28472 5.39804 5.59618 5.73568 5.86761 6.01117 6.05213 6.18332 6.21041 6.30885 6.38518 6.40129 6.50631 6.75748 6.79833 6.86371 6.97566 7.12305 7.29883 7.42742 7.61425 7.79198 7.99966 8.34485 8.95492 9.58440 11.07941 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.010672 C = 0.008121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.113342 B = 2623.179329 C = 3447.048295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.096 3.904 10 H 0.036 0.964 11 C -0.095 4.095 12 C -0.131 4.131 13 C -0.217 4.217 14 C -0.016 4.016 15 H 0.072 0.928 16 C -0.111 4.111 17 C -0.130 4.130 18 C -0.117 4.117 19 C -0.106 4.106 20 S -0.270 6.270 21 H 0.258 0.742 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 -8.380 0.771 9.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.076 3.924 10 H 0.054 0.946 11 C -0.114 4.114 12 C -0.169 4.169 13 C -0.255 4.255 14 C -0.144 4.144 15 H 0.090 0.910 16 C -0.150 4.150 17 C -0.167 4.167 18 C -0.156 4.156 19 C -0.253 4.253 20 S -0.042 6.042 21 H 0.068 0.932 22 H 0.095 0.905 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.196 -8.504 0.778 9.118 hybrid contribution 1.716 1.171 -0.187 2.085 sum 4.911 -7.334 0.591 8.846 Atomic orbital electron populations 1.70050 1.05628 1.26136 1.48946 1.24941 0.94831 0.98732 0.94954 0.86680 0.79907 0.83889 0.77992 1.20849 1.21341 1.19999 1.21001 0.92639 0.89638 1.52323 0.92266 1.18242 0.91205 0.89726 0.93238 0.94595 1.22176 0.91945 0.97363 0.99917 1.22422 0.97674 0.95587 1.01199 1.23241 1.09372 0.92192 1.00698 1.23446 0.98937 0.92412 0.99620 0.90991 1.21759 0.96167 0.98634 0.98449 1.21591 0.98754 0.95076 1.01297 1.21670 0.98377 0.97133 0.98393 1.23501 0.99780 1.01134 1.00920 1.87127 1.15311 1.05897 1.95825 0.93185 0.90524 0.89447 0.91659 0.91271 0.88700 0.89543 0.91530 0.92109 0.92464 0.91129 0.92360 0.89342 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.88 10.97 55.43 0.61 -23.27 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.36 7.80 -34.44 -0.27 -13.63 16 8 H 0.06 1.50 6.30 -52.49 -0.33 1.17 16 9 C 0.10 2.30 1.59 -91.77 -0.15 2.15 16 10 H 0.04 0.97 7.95 -51.93 -0.41 0.56 16 11 C -0.10 -2.24 4.28 -90.63 -0.39 -2.63 16 12 C -0.13 -3.01 8.58 -26.70 -0.23 -3.24 16 13 C -0.22 -4.56 8.99 -26.70 -0.24 -4.80 16 14 C -0.02 -0.33 2.11 -26.68 -0.06 -0.38 16 15 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 16 C -0.11 -2.04 4.76 -26.90 -0.13 -2.17 16 17 C -0.13 -1.93 5.61 -27.16 -0.15 -2.08 16 18 C -0.12 -1.60 5.75 -26.89 -0.15 -1.76 16 19 C -0.11 -1.55 6.46 37.21 0.24 -1.31 16 20 S -0.27 -5.02 17.64 -107.50 -1.90 -6.92 16 21 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 22 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 23 H 0.09 2.15 8.00 -51.92 -0.42 1.73 16 24 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.10 2.00 5.28 -35.34 -0.19 1.82 16 27 H 0.09 1.69 6.17 -51.93 -0.32 1.37 16 28 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -26.25 272.04 -9.27 -35.51 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.44 Total: 3.04 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -1.62 Total: -28.12 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.61 Total: -23.27 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.90 Total: -6.92 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.25 -9.27 -35.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.411 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds