Wall clock time and date at job start Mon Mar 30 2020 03:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47170 * 269.99935 * 3 2 1 5 5 H 1.48501 * 109.47137 * 29.99645 * 3 2 1 6 6 H 1.48492 * 109.46903 * 149.99697 * 3 2 1 7 7 C 1.37875 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99900 * 0.27698 * 7 2 1 10 10 H 1.08995 * 109.46926 * 299.72421 * 9 7 2 11 11 C 1.53001 * 109.47123 * 59.72299 * 9 7 2 12 12 C 1.52991 * 117.50254 * 254.21255 * 11 9 7 13 13 C 1.52995 * 117.50000 * 185.54860 * 11 9 7 14 14 C 1.53001 * 109.46956 * 179.72533 * 9 7 2 15 15 H 1.09000 * 109.57242 * 293.68537 * 14 9 7 16 16 C 1.53092 * 109.57848 * 54.07422 * 14 9 7 17 17 C 1.52575 * 109.95710 * 182.83099 * 16 14 9 18 18 C 1.52580 * 110.72759 * 289.32574 * 17 16 14 19 19 C 1.53104 * 109.95656 * 70.67714 * 18 17 16 20 20 S 1.81748 * 108.83884 * 296.97618 * 19 18 17 21 21 H 0.96994 * 119.99931 * 0.02562 * 1 2 3 22 22 H 1.09002 * 115.54840 * 39.88303 * 11 9 7 23 23 H 1.09008 * 117.49686 * 0.02562 * 12 11 9 24 24 H 1.09002 * 117.50339 * 145.01913 * 12 11 9 25 25 H 1.08998 * 117.50049 * 214.97773 * 13 11 9 26 26 H 1.08993 * 117.49912 * 359.97438 * 13 11 9 27 27 H 1.09000 * 109.39084 * 302.98395 * 16 14 9 28 28 H 1.09003 * 109.38789 * 62.68337 * 16 14 9 29 29 H 1.09002 * 109.22979 * 169.00640 * 17 16 14 30 30 H 1.08998 * 109.19096 * 49.62591 * 17 16 14 31 31 H 1.09003 * 109.39108 * 310.52993 * 18 17 16 32 32 H 1.09005 * 109.31401 * 190.76918 * 18 17 16 33 33 H 1.09000 * 109.57766 * 177.17016 * 19 18 17 34 34 H 1.08999 * 109.68002 * 56.84049 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 -0.0052 10 1 0.6244 -2.5608 0.8845 11 6 0.3714 -2.5747 -1.2548 12 6 -1.1349 -2.3798 -1.0713 13 6 -0.5749 -3.7702 -1.3813 14 6 2.2453 -3.6621 -0.0102 15 1 2.7962 -3.6674 -0.9508 16 6 3.2219 -3.5071 1.1585 17 6 4.2607 -4.6240 1.1208 18 6 3.6276 -5.9629 1.4873 19 6 2.7024 -6.4295 0.3601 20 16 1.3480 -5.2313 0.1786 21 1 -0.4850 0.8400 -0.0004 22 1 0.8209 -2.1896 -2.1701 23 1 -1.4993 -2.1972 -0.0603 24 1 -1.6765 -1.8667 -1.8660 25 1 -0.7484 -4.1713 -2.3799 26 1 -0.5705 -4.5031 -0.5746 27 1 3.7245 -2.5427 1.0847 28 1 2.6721 -3.5559 2.0984 29 1 5.0572 -4.3976 1.8296 30 1 4.6811 -4.6885 0.1172 31 1 3.0512 -5.8514 2.4057 32 1 4.4129 -6.7032 1.6405 33 1 2.2928 -7.4093 0.6058 34 1 3.2628 -6.4913 -0.5728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:48 Heat of formation + Delta-G solvation = -10.943233 kcal Electronic energy + Delta-G solvation = -14272.220103 eV Core-core repulsion = 12102.522049 eV Total energy + Delta-G solvation = -2169.698053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.95427 -37.33042 -34.63929 -33.08123 -29.74986 -27.16303 -25.32343 -23.15569 -22.50008 -21.48124 -20.72598 -18.71912 -17.31441 -16.54687 -15.95688 -15.80367 -15.30272 -14.97103 -14.52974 -14.25701 -13.93456 -13.55479 -13.32367 -12.85316 -12.60759 -12.46563 -12.34810 -12.01338 -11.83229 -11.79868 -11.57095 -11.42275 -10.96824 -10.70994 -10.51619 -10.16048 -9.91651 -8.36055 -8.00205 -6.13786 1.07669 1.42930 1.45355 1.53258 1.92029 2.47864 3.25541 3.45982 3.87301 3.99246 4.05720 4.25655 4.38609 4.42294 4.48856 4.59223 4.68088 4.75617 4.86749 4.95001 5.05525 5.07753 5.13732 5.18670 5.31234 5.37024 5.44815 5.48652 5.61383 5.70493 5.79976 6.00011 6.35430 6.93108 7.52009 9.03451 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.010672 C = 0.008121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.113342 B = 2623.179329 C = 3447.048295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.100 3.900 10 H -0.003 1.003 11 C -0.110 4.110 12 C -0.137 4.137 13 C -0.184 4.184 14 C -0.011 4.011 15 H 0.065 0.935 16 C -0.107 4.107 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.092 4.092 20 S -0.302 6.302 21 H 0.256 0.744 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 -9.990 0.674 11.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.079 0.921 9 C 0.080 3.920 10 H 0.015 0.985 11 C -0.129 4.129 12 C -0.175 4.175 13 C -0.221 4.221 14 C -0.139 4.139 15 H 0.084 0.916 16 C -0.146 4.146 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.240 4.240 20 S -0.073 6.073 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.758 -10.116 0.681 11.199 hybrid contribution 1.245 1.600 -0.139 2.032 sum 6.003 -8.516 0.543 10.433 Atomic orbital electron populations 1.70187 1.06773 1.26507 1.49930 1.25650 0.95606 1.01742 0.94972 0.85745 0.78913 0.80197 0.77866 1.20662 1.21492 1.19221 1.21340 0.92923 0.90810 1.51569 0.92126 1.18040 0.91386 0.90880 0.91695 0.98473 1.22050 0.92124 0.99705 0.99057 1.22289 0.97405 0.97739 1.00064 1.23223 1.05928 0.91030 1.01948 1.23167 0.98270 0.92440 1.00070 0.91632 1.21681 0.96497 0.99567 0.96891 1.21547 0.97985 0.94337 1.02279 1.21654 0.98952 0.97075 0.97521 1.23610 0.98140 1.00174 1.02032 1.87057 1.18091 1.06141 1.96047 0.93507 0.92018 0.91747 0.91260 0.89039 0.88407 0.91329 0.92888 0.90143 0.91994 0.91718 0.88834 0.87060 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.59 10.97 21.45 0.24 -50.35 16 2 C 0.02 1.14 5.30 84.65 0.45 1.59 16 3 Si 0.95 42.98 29.54 68.60 2.03 45.00 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -27.90 7.80 25.60 0.20 -27.70 16 8 H 0.06 3.12 6.30 -2.91 -0.02 3.10 16 9 C 0.10 4.92 1.59 -11.54 -0.02 4.90 16 10 H 0.00 -0.16 7.95 -2.39 -0.02 -0.18 16 11 C -0.11 -5.32 4.28 -10.80 -0.05 -5.36 16 12 C -0.14 -6.45 8.58 30.62 0.26 -6.19 16 13 C -0.18 -7.63 8.99 30.62 0.28 -7.35 16 14 C -0.01 -0.45 2.11 30.63 0.06 -0.39 16 15 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 16 C -0.11 -3.90 4.76 30.48 0.15 -3.76 16 17 C -0.12 -3.36 5.61 30.31 0.17 -3.19 16 18 C -0.11 -2.68 5.75 30.49 0.18 -2.50 16 19 C -0.09 -2.38 6.46 72.02 0.46 -1.91 16 20 S -0.30 -10.83 17.64 -56.49 -1.00 -11.83 16 21 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 22 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 23 H 0.06 3.30 8.00 -2.38 -0.02 3.28 16 24 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 25 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 26 H 0.10 4.07 5.28 -12.94 -0.07 4.01 16 27 H 0.07 2.70 6.17 -2.39 -0.01 2.69 16 28 H 0.05 2.03 8.06 -2.39 -0.02 2.02 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 31 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 32 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -57.24 272.04 4.40 -52.83 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 1.00 Total: 16.22 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 2.14 Total: -51.87 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.24 Total: -50.35 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.00 Total: -11.83 kcal Total: -57.24 4.40 -52.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.888 kcal (2) G-P(sol) polarization free energy of solvation -57.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds