Wall clock time and date at job start Mon Mar 30 2020 03:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00404 * 2 1 4 4 H 1.48498 * 109.47318 * 269.99933 * 3 2 1 5 5 H 1.48501 * 109.47105 * 29.99797 * 3 2 1 6 6 H 1.48495 * 109.47321 * 149.99544 * 3 2 1 7 7 C 1.37883 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99424 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46906 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47589 * 55.00178 * 10 9 7 12 12 C 1.52996 * 109.47215 * 294.99666 * 10 9 7 13 13 C 1.53002 * 117.49888 * 111.25646 * 12 10 9 14 14 C 1.53000 * 117.50107 * 179.91408 * 12 10 9 15 15 C 1.53005 * 109.46789 * 174.99660 * 10 9 7 16 16 H 1.09007 * 110.69874 * 68.31648 * 15 10 9 17 17 C 1.54259 * 110.78965 * 304.99925 * 15 10 9 18 18 C 1.52334 * 112.58524 * 217.19666 * 17 15 10 19 19 C 1.54261 * 112.59048 * 0.02562 * 18 17 15 20 20 S 1.83954 * 102.57832 * 24.52852 * 19 18 17 21 21 H 0.96997 * 119.99393 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47322 * 59.99869 * 9 7 2 23 23 H 1.08999 * 109.46955 * 299.99859 * 9 7 2 24 24 H 1.09002 * 115.54951 * 325.58620 * 12 10 9 25 25 H 1.09000 * 117.49996 * 215.00804 * 13 12 10 26 26 H 1.08999 * 117.49664 * 0.02562 * 13 12 10 27 27 H 1.09008 * 117.49673 * 359.97438 * 14 12 10 28 28 H 1.08999 * 117.49942 * 144.97366 * 14 12 10 29 29 H 1.08990 * 108.86521 * 338.01993 * 17 15 10 30 30 H 1.09003 * 108.86567 * 96.52696 * 17 15 10 31 31 H 1.08998 * 108.86420 * 120.82325 * 18 17 15 32 32 H 1.09004 * 108.86601 * 239.17922 * 18 17 15 33 33 H 1.08998 * 110.78526 * 142.79565 * 19 18 17 34 34 H 1.08997 * 110.78889 * 266.25412 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 1 2.9286 -3.5550 0.8441 12 6 3.0408 -3.6543 -1.3049 13 6 4.5278 -3.3031 -1.2244 14 6 4.0955 -4.7460 -1.4964 15 6 1.4841 -4.9835 0.1276 16 1 0.9044 -5.1816 -0.7740 17 6 0.5736 -4.9745 1.3728 18 6 0.5178 -6.3296 2.0665 19 6 1.3853 -7.3925 1.3613 20 16 2.6392 -6.3699 0.4862 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 2.4927 -3.3238 -2.1872 25 1 4.9579 -2.7414 -2.0537 26 1 4.9392 -3.0780 -0.2405 27 1 4.2228 -5.4697 -0.6912 28 1 4.2409 -5.1341 -2.5046 29 1 0.9482 -4.2327 2.0780 30 1 -0.4352 -4.6941 1.0698 31 1 0.8664 -6.2148 3.0928 32 1 -0.5164 -6.6737 2.0851 33 1 1.8614 -8.0486 2.0899 34 1 0.7912 -7.9677 0.6512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:54 Heat of formation + Delta-G solvation = -0.793801 kcal Electronic energy + Delta-G solvation = -13966.939668 eV Core-core repulsion = 11797.681727 eV Total energy + Delta-G solvation = -2169.257941 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.85246 -35.57006 -33.17301 -31.43411 -28.09418 -25.80621 -23.50612 -22.01291 -21.69079 -19.98523 -18.85160 -16.72508 -15.96117 -15.25080 -14.75000 -14.35172 -14.22489 -13.64013 -13.16611 -12.52005 -12.42114 -11.95991 -11.54932 -11.48141 -11.19989 -11.06495 -10.82155 -10.67043 -10.47700 -10.16851 -9.94619 -9.75636 -9.57639 -9.25589 -8.94418 -8.86073 -8.33140 -7.34134 -5.98765 -3.99084 2.23680 2.72966 3.32924 3.39528 3.43161 4.46449 4.50874 4.81286 4.98648 5.19905 5.31856 5.38676 5.49873 5.55078 5.60652 5.67385 5.79225 5.87928 5.99683 6.16306 6.24130 6.33456 6.38887 6.47703 6.55641 6.64474 6.74619 7.00203 7.07923 7.65860 7.76872 8.00533 8.43961 9.07064 9.64362 11.12669 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.008399 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.862598 B = 3332.851669 C = 4007.924296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.036 4.036 11 H 0.069 0.931 12 C -0.116 4.116 13 C -0.172 4.172 14 C -0.196 4.196 15 C -0.008 4.008 16 H 0.088 0.912 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.087 4.087 20 S -0.303 6.303 21 H 0.259 0.741 22 H 0.017 0.983 23 H 0.023 0.977 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -11.519 1.191 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.055 4.055 11 H 0.088 0.912 12 C -0.135 4.135 13 C -0.209 4.209 14 C -0.233 4.233 15 C -0.136 4.136 16 H 0.107 0.893 17 C -0.164 4.164 18 C -0.161 4.161 19 C -0.235 4.235 20 S -0.075 6.075 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.425 -11.642 0.967 12.174 hybrid contribution -0.791 1.145 0.173 1.402 sum 2.634 -10.497 1.139 10.883 Atomic orbital electron populations 1.69959 1.05986 1.26466 1.51335 1.24991 0.94787 0.99096 0.95582 0.86644 0.79911 0.83720 0.78048 1.20786 1.21374 1.19900 1.21215 0.93221 0.90539 1.49759 0.92313 1.19192 0.93265 0.90505 0.97523 1.20926 0.97343 0.91985 0.95289 0.91239 1.22175 0.90602 1.01046 0.99644 1.22848 0.98520 0.97253 1.02244 1.23182 1.06297 0.92048 1.01821 1.24114 0.95131 0.94550 0.99787 0.89349 1.22134 1.00570 0.96908 0.96755 1.21997 0.99749 0.93940 1.00403 1.24187 0.98474 0.99612 1.01217 1.87920 1.21991 1.23266 1.74298 0.93130 0.96467 0.95895 0.88236 0.89730 0.89311 0.87961 0.89866 0.89922 0.90721 0.91256 0.91582 0.88858 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.82 8.61 -34.44 -0.30 -14.12 16 8 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 9 C 0.03 0.82 4.22 -27.89 -0.12 0.71 16 10 C -0.04 -0.71 1.51 -90.62 -0.14 -0.85 16 11 H 0.07 1.48 7.89 -51.93 -0.41 1.07 16 12 C -0.12 -2.23 4.51 -90.62 -0.41 -2.64 16 13 C -0.17 -3.06 9.90 -26.69 -0.26 -3.32 16 14 C -0.20 -3.28 9.34 -26.70 -0.25 -3.53 16 15 C -0.01 -0.13 2.83 -26.07 -0.07 -0.21 16 16 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 17 C -0.12 -1.97 4.78 -26.41 -0.13 -2.10 16 18 C -0.12 -1.56 6.30 -26.41 -0.17 -1.73 16 19 C -0.09 -1.10 7.46 37.82 0.28 -0.82 16 20 S -0.30 -4.81 18.95 -107.50 -2.04 -6.84 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.02 0.58 6.59 -51.93 -0.34 0.24 16 24 H 0.10 1.99 8.11 -51.93 -0.42 1.57 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.09 1.61 8.05 -51.93 -0.42 1.19 16 27 H 0.10 1.75 4.93 -34.06 -0.17 1.58 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.43 7.17 -51.93 -0.37 1.06 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -28.30 279.65 -9.22 -37.51 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.46 Total: 1.34 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -1.65 Total: -27.13 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -2.04 Total: -6.84 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.30 -9.22 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.719 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds