Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00404 * 2 1 4 4 H 1.48498 * 109.47318 * 269.99933 * 3 2 1 5 5 H 1.48501 * 109.47105 * 29.99797 * 3 2 1 6 6 H 1.48495 * 109.47321 * 149.99544 * 3 2 1 7 7 C 1.37883 * 119.99492 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99424 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46906 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47589 * 55.00178 * 10 9 7 12 12 C 1.52996 * 109.47215 * 294.99666 * 10 9 7 13 13 C 1.53002 * 117.49888 * 111.25646 * 12 10 9 14 14 C 1.53000 * 117.50107 * 179.91408 * 12 10 9 15 15 C 1.53005 * 109.46789 * 174.99660 * 10 9 7 16 16 H 1.09007 * 110.69874 * 68.31648 * 15 10 9 17 17 C 1.54259 * 110.78965 * 304.99925 * 15 10 9 18 18 C 1.52334 * 112.58524 * 217.19666 * 17 15 10 19 19 C 1.54261 * 112.59048 * 0.02562 * 18 17 15 20 20 S 1.83954 * 102.57832 * 24.52852 * 19 18 17 21 21 H 0.96997 * 119.99393 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47322 * 59.99869 * 9 7 2 23 23 H 1.08999 * 109.46955 * 299.99859 * 9 7 2 24 24 H 1.09002 * 115.54951 * 325.58620 * 12 10 9 25 25 H 1.09000 * 117.49996 * 215.00804 * 13 12 10 26 26 H 1.08999 * 117.49664 * 0.02562 * 13 12 10 27 27 H 1.09008 * 117.49673 * 359.97438 * 14 12 10 28 28 H 1.08999 * 117.49942 * 144.97366 * 14 12 10 29 29 H 1.08990 * 108.86521 * 338.01993 * 17 15 10 30 30 H 1.09003 * 108.86567 * 96.52696 * 17 15 10 31 31 H 1.08998 * 108.86420 * 120.82325 * 18 17 15 32 32 H 1.09004 * 108.86601 * 239.17922 * 18 17 15 33 33 H 1.08998 * 110.78526 * 142.79565 * 19 18 17 34 34 H 1.08997 * 110.78889 * 266.25412 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 1 2.9286 -3.5550 0.8441 12 6 3.0408 -3.6543 -1.3049 13 6 4.5278 -3.3031 -1.2244 14 6 4.0955 -4.7460 -1.4964 15 6 1.4841 -4.9835 0.1276 16 1 0.9044 -5.1816 -0.7740 17 6 0.5736 -4.9745 1.3728 18 6 0.5178 -6.3296 2.0665 19 6 1.3853 -7.3925 1.3613 20 16 2.6392 -6.3699 0.4862 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 2.4927 -3.3238 -2.1872 25 1 4.9579 -2.7414 -2.0537 26 1 4.9392 -3.0780 -0.2405 27 1 4.2228 -5.4697 -0.6912 28 1 4.2409 -5.1341 -2.5046 29 1 0.9482 -4.2327 2.0780 30 1 -0.4352 -4.6941 1.0698 31 1 0.8664 -6.2148 3.0928 32 1 -0.5164 -6.6737 2.0851 33 1 1.8614 -8.0486 2.0899 34 1 0.7912 -7.9677 0.6512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -14.425538 kcal Electronic energy + Delta-G solvation = -13967.530784 eV Core-core repulsion = 11797.681727 eV Total energy + Delta-G solvation = -2169.849057 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 226.109 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37183 -36.82173 -35.12936 -33.07281 -29.73913 -27.32004 -25.12549 -23.61751 -23.16416 -21.34006 -20.35606 -18.59269 -17.45154 -16.70100 -16.46303 -15.82907 -15.65533 -14.94760 -14.54152 -14.34947 -13.74819 -13.58567 -13.25444 -12.99529 -12.75199 -12.55058 -12.45943 -12.32450 -12.14309 -11.55139 -11.52659 -11.34084 -11.19060 -10.91034 -10.58577 -10.49281 -10.32436 -8.59728 -8.14638 -6.21590 1.01061 1.40620 1.40960 1.50208 1.51877 2.43827 3.05596 3.19838 3.59550 3.83196 3.96102 4.02366 4.18657 4.27668 4.31089 4.31979 4.54166 4.63535 4.74179 4.84864 4.87681 4.99111 5.09161 5.12205 5.17049 5.23530 5.26492 5.36747 5.44487 5.60910 5.77780 5.89076 6.32928 6.92999 7.45655 8.96954 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.008399 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.862598 B = 3332.851669 C = 4007.924296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.043 3.957 10 C -0.022 4.022 11 H 0.055 0.945 12 C -0.140 4.140 13 C -0.175 4.175 14 C -0.168 4.168 15 C -0.009 4.009 16 H 0.085 0.915 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.074 4.074 20 S -0.320 6.320 21 H 0.261 0.739 22 H -0.009 1.009 23 H 0.004 0.996 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -12.830 1.428 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.004 3.996 10 C -0.042 4.042 11 H 0.073 0.927 12 C -0.158 4.158 13 C -0.212 4.212 14 C -0.205 4.205 15 C -0.137 4.137 16 H 0.103 0.897 17 C -0.163 4.163 18 C -0.157 4.157 19 C -0.221 4.221 20 S -0.092 6.092 21 H 0.069 0.931 22 H 0.009 0.991 23 H 0.022 0.978 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.352 -12.960 1.202 13.724 hybrid contribution -1.105 1.497 0.120 1.865 sum 3.246 -11.463 1.323 11.987 Atomic orbital electron populations 1.70081 1.07491 1.27345 1.52498 1.25826 0.95621 1.02720 0.95380 0.85619 0.78807 0.79426 0.78263 1.20149 1.21010 1.19048 1.21585 0.93447 0.91830 1.49005 0.92275 1.19005 0.93510 0.91847 0.95204 1.20597 0.96163 0.91996 0.95408 0.92693 1.22064 0.91270 1.04016 0.98495 1.22921 0.97207 0.98593 1.02475 1.23185 1.03063 0.91267 1.02986 1.23894 0.95451 0.94055 1.00337 0.89675 1.22133 0.99670 0.98642 0.95897 1.21941 1.01407 0.92049 1.00259 1.24328 0.97182 0.99072 1.01487 1.87856 1.23086 1.23027 1.75214 0.93071 0.99077 0.97781 0.89692 0.88580 0.89862 0.87785 0.87904 0.92158 0.91374 0.90391 0.89277 0.86532 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.52 -28.95 8.61 25.60 0.22 -28.73 16 8 H 0.06 3.21 7.33 -2.91 -0.02 3.19 16 9 C 0.04 2.19 4.22 29.85 0.13 2.31 16 10 C -0.02 -0.90 1.51 -10.79 -0.02 -0.92 16 11 H 0.05 2.39 7.89 -2.39 -0.02 2.37 16 12 C -0.14 -5.39 4.51 -10.79 -0.05 -5.44 16 13 C -0.17 -6.10 9.90 30.62 0.30 -5.80 16 14 C -0.17 -5.36 9.34 30.62 0.29 -5.08 16 15 C -0.01 -0.31 2.83 31.02 0.09 -0.23 16 16 H 0.08 2.96 8.14 -2.38 -0.02 2.95 16 17 C -0.12 -3.93 4.78 30.80 0.15 -3.78 16 18 C -0.12 -2.73 6.30 30.80 0.19 -2.53 16 19 C -0.07 -1.60 7.46 72.41 0.54 -1.06 16 20 S -0.32 -9.56 18.95 -56.49 -1.07 -10.63 16 21 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 22 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 23 H 0.00 0.21 6.59 -2.39 -0.02 0.20 16 24 H 0.08 3.49 8.11 -2.39 -0.02 3.47 16 25 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 26 H 0.08 2.98 8.05 -2.39 -0.02 2.96 16 27 H 0.10 3.37 4.93 -13.74 -0.07 3.30 16 28 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.06 2.15 7.17 -2.39 -0.02 2.14 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -61.07 279.65 4.54 -56.53 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.00 Total: 14.05 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 2.30 Total: -50.68 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.07 Total: -10.63 kcal Total: -61.07 4.54 -56.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.105 kcal (2) G-P(sol) polarization free energy of solvation -61.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds