Wall clock time and date at job start Mon Mar 30 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47500 * 2 1 4 4 C 1.50702 * 109.47265 * 239.99964 * 2 1 3 5 5 H 1.08004 * 119.99958 * 245.56262 * 4 2 1 6 6 C 1.37878 * 120.00023 * 65.55500 * 4 2 1 7 7 N 1.31519 * 119.99974 * 199.56715 * 6 4 2 8 8 Si 1.86793 * 119.99919 * 19.56546 * 6 4 2 9 9 H 1.48501 * 109.47195 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47347 * 299.99836 * 8 6 4 11 11 H 1.48499 * 109.47034 * 59.99982 * 8 6 4 12 12 N 1.46507 * 109.46829 * 119.99998 * 2 1 3 13 13 C 1.44834 * 114.05525 * 244.88893 * 12 2 1 14 14 C 1.52035 * 112.60119 * 192.91266 * 13 12 2 15 15 C 1.49932 * 110.91417 * 295.64888 * 14 13 12 16 16 O 1.21281 * 118.82503 * 250.22065 * 15 14 13 17 17 N 1.32396 * 122.34723 * 70.24481 * 15 14 13 18 18 C 1.46387 * 119.62961 * 5.86888 * 17 15 14 19 19 C 1.31258 * 114.06183 * 64.65402 * 12 2 1 20 20 O 1.21283 * 116.35852 * 358.07599 * 19 12 2 21 21 H 1.08999 * 109.47174 * 172.43817 * 1 2 3 22 22 H 1.08995 * 109.47202 * 292.44124 * 1 2 3 23 23 H 1.09000 * 109.46950 * 52.44490 * 1 2 3 24 24 H 0.97001 * 119.99852 * 354.95581 * 7 6 4 25 25 H 1.08999 * 108.86064 * 313.71902 * 13 12 2 26 26 H 1.09004 * 108.85270 * 72.11396 * 13 12 2 27 27 H 1.08996 * 109.18971 * 56.01787 * 14 13 12 28 28 H 1.09002 * 109.18754 * 175.27959 * 14 13 12 29 29 H 0.97001 * 120.18262 * 185.84892 * 17 15 14 30 30 H 1.09002 * 109.09048 * 55.18819 * 18 17 15 31 31 H 1.08998 * 109.09315 * 174.19238 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5772 -1.6379 -1.1339 6 6 1.7963 -0.1764 -2.4795 7 7 1.8755 -0.9405 -3.5471 8 14 1.3640 1.6323 -2.6554 9 1 1.1604 1.9553 -4.0905 10 1 0.1173 1.9189 -1.9014 11 1 2.4713 2.4608 -2.1144 12 7 2.0183 -0.6907 1.1962 13 6 2.7442 0.1617 2.1151 14 6 3.4981 -0.6281 3.1731 15 6 2.5487 -1.3768 4.0597 16 8 2.4132 -1.0147 5.2092 17 7 1.8535 -2.4195 3.6327 18 6 2.0977 -2.9518 2.2911 19 6 1.7129 -1.9665 1.2397 20 8 1.0473 -2.3925 0.3197 21 1 -0.3633 -1.0187 -0.1352 22 1 -0.3633 0.3923 0.9498 23 1 -0.3633 0.6264 -0.8147 24 1 2.1710 -1.8606 -3.4640 25 1 3.4566 0.7628 1.5500 26 1 2.0379 0.8284 2.6098 27 1 4.1655 -1.3370 2.6832 28 1 4.0888 0.0585 3.7795 29 1 1.1863 -2.8285 4.2057 30 1 3.1564 -3.1909 2.1897 31 1 1.5134 -3.8621 2.1569 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261037876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:12 Heat of formation + Delta-G solvation = -46.559200 kcal Electronic energy + Delta-G solvation = -16498.931720 eV Core-core repulsion = 13781.396028 eV Total energy + Delta-G solvation = -2717.535692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78100 -39.04271 -35.60533 -35.15811 -33.08889 -31.27950 -29.37983 -27.25449 -24.95430 -24.67724 -21.21773 -20.39667 -18.72354 -17.70990 -17.19444 -16.81623 -16.12190 -15.02062 -14.69500 -14.29306 -14.04180 -13.63329 -13.36919 -12.92285 -12.50847 -12.31315 -12.17521 -11.78067 -11.37763 -11.26467 -11.15178 -10.45611 -10.11027 -9.88144 -9.77117 -9.70190 -9.06987 -8.50319 -8.21673 -7.75596 -6.38015 -3.92565 2.52472 2.97598 3.37629 3.39254 3.55519 3.63063 3.70688 4.44288 4.51178 4.85847 4.91509 5.06876 5.10661 5.31225 5.53699 5.55538 5.77766 5.84329 6.37510 6.46650 6.63147 6.70310 6.77090 7.14414 7.25581 7.51757 7.94272 8.11785 8.43507 8.49947 8.93452 9.05500 9.70538 11.01600 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.043000 B = 0.009172 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.000015 B = 3052.199861 C = 3335.039546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.233 3.767 3 H 0.032 0.968 4 C -0.579 4.579 5 H 0.061 0.939 6 C 0.028 3.972 7 N -0.905 5.905 8 Si 1.039 2.961 9 H -0.284 1.284 10 H -0.275 1.275 11 H -0.284 1.284 12 N -0.583 5.583 13 C 0.128 3.872 14 C -0.154 4.154 15 C 0.519 3.481 16 O -0.558 6.558 17 N -0.709 5.709 18 C 0.095 3.905 19 C 0.487 3.513 20 O -0.508 6.508 21 H 0.074 0.926 22 H 0.015 0.985 23 H 0.056 0.944 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.407 0.593 30 H 0.091 0.909 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 0.126 12.065 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.131 3.869 3 H 0.049 0.951 4 C -0.617 4.617 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.540 5.540 8 Si 0.868 3.132 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.211 1.211 12 N -0.315 5.315 13 C 0.004 3.996 14 C -0.194 4.194 15 C 0.306 3.694 16 O -0.437 6.437 17 N -0.363 5.363 18 C -0.033 4.033 19 C 0.270 3.730 20 O -0.383 6.383 21 H 0.093 0.907 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.244 0.756 30 H 0.109 0.891 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.794 1.289 10.972 11.192 hybrid contribution 0.305 -1.411 1.312 1.950 sum 2.100 -0.122 12.283 12.462 Atomic orbital electron populations 1.22561 0.98442 1.03209 0.98227 1.19274 0.91458 0.92249 0.83948 0.95076 1.21959 1.39740 1.09637 0.90387 0.92123 1.25610 0.94963 1.04989 0.92157 1.70821 1.42345 1.09027 1.31781 0.84134 0.76921 0.75755 0.76344 1.21020 1.20161 1.21079 1.46787 1.53333 1.08469 1.22899 1.20809 0.95867 0.92709 0.90238 1.21760 0.98408 1.01124 0.98114 1.20007 0.81164 0.80107 0.88154 1.90741 1.66824 1.67064 1.19094 1.45374 1.41227 1.32772 1.16928 1.21723 1.03852 0.97433 0.80292 1.19071 0.82906 0.82907 0.88069 1.90851 1.37039 1.75064 1.35329 0.90726 0.96555 0.92568 0.92201 0.89417 0.91887 0.88751 0.86766 0.75608 0.89100 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 8.67 37.16 0.32 -3.49 16 2 C 0.23 5.36 2.04 -69.08 -0.14 5.22 16 3 H 0.03 0.69 6.19 -51.93 -0.32 0.37 16 4 C -0.58 -15.98 7.39 -34.44 -0.25 -16.23 16 5 H 0.06 1.85 6.97 -52.48 -0.37 1.49 16 6 C 0.03 0.79 5.33 -17.82 -0.09 0.70 16 7 N -0.91 -27.99 13.70 55.43 0.76 -27.23 16 8 Si 1.04 24.52 26.51 -169.99 -4.51 20.01 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.27 -6.04 5.55 56.52 0.31 -5.72 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.58 -11.15 2.81 -170.96 -0.48 -11.63 16 13 C 0.13 1.87 5.71 -5.42 -0.03 1.84 16 14 C -0.15 -1.87 5.42 -28.74 -0.16 -2.02 16 15 C 0.52 7.34 7.16 -12.41 -0.09 7.25 16 16 O -0.56 -9.62 17.83 5.56 0.10 -9.52 16 17 N -0.71 -8.91 5.41 -63.19 -0.34 -9.25 16 18 C 0.09 1.26 6.21 -6.00 -0.04 1.23 16 19 C 0.49 9.35 6.43 -13.27 -0.09 9.27 16 20 O -0.51 -12.26 12.00 5.55 0.07 -12.19 16 21 H 0.07 1.88 6.03 -51.93 -0.31 1.56 16 22 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 1.30 4.99 -51.93 -0.26 1.04 16 24 H 0.27 8.38 8.73 -40.82 -0.36 8.02 16 25 H 0.09 1.20 7.91 -51.93 -0.41 0.79 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.09 1.04 7.34 -51.93 -0.38 0.66 16 28 H 0.11 1.16 8.10 -51.93 -0.42 0.74 16 29 H 0.41 4.44 8.89 -40.82 -0.36 4.08 16 30 H 0.09 1.05 7.53 -51.93 -0.39 0.65 16 31 H 0.12 1.37 8.04 -51.93 -0.42 0.96 16 LS Contribution 249.37 15.07 3.76 3.76 Total: -1.00 -34.61 249.37 -4.94 -39.55 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.73 Total: 2.74 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.57 Total: 3.75 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.06 Total: -48.10 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.17 Total: -21.71 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.51 Total: 20.01 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.61 -4.94 -39.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.005 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds