Wall clock time and date at job start Mon Mar 30 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47500 * 2 1 4 4 C 1.50702 * 109.47265 * 239.99964 * 2 1 3 5 5 H 1.08004 * 119.99958 * 245.56262 * 4 2 1 6 6 C 1.37878 * 120.00023 * 65.55500 * 4 2 1 7 7 N 1.31519 * 119.99974 * 199.56715 * 6 4 2 8 8 Si 1.86793 * 119.99919 * 19.56546 * 6 4 2 9 9 H 1.48501 * 109.47195 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47347 * 299.99836 * 8 6 4 11 11 H 1.48499 * 109.47034 * 59.99982 * 8 6 4 12 12 N 1.46507 * 109.46829 * 119.99998 * 2 1 3 13 13 C 1.44834 * 114.05525 * 244.88893 * 12 2 1 14 14 C 1.52035 * 112.60119 * 192.91266 * 13 12 2 15 15 C 1.49932 * 110.91417 * 295.64888 * 14 13 12 16 16 O 1.21281 * 118.82503 * 250.22065 * 15 14 13 17 17 N 1.32396 * 122.34723 * 70.24481 * 15 14 13 18 18 C 1.46387 * 119.62961 * 5.86888 * 17 15 14 19 19 C 1.31258 * 114.06183 * 64.65402 * 12 2 1 20 20 O 1.21283 * 116.35852 * 358.07599 * 19 12 2 21 21 H 1.08999 * 109.47174 * 172.43817 * 1 2 3 22 22 H 1.08995 * 109.47202 * 292.44124 * 1 2 3 23 23 H 1.09000 * 109.46950 * 52.44490 * 1 2 3 24 24 H 0.97001 * 119.99852 * 354.95581 * 7 6 4 25 25 H 1.08999 * 108.86064 * 313.71902 * 13 12 2 26 26 H 1.09004 * 108.85270 * 72.11396 * 13 12 2 27 27 H 1.08996 * 109.18971 * 56.01787 * 14 13 12 28 28 H 1.09002 * 109.18754 * 175.27959 * 14 13 12 29 29 H 0.97001 * 120.18262 * 185.84892 * 17 15 14 30 30 H 1.09002 * 109.09048 * 55.18819 * 18 17 15 31 31 H 1.08998 * 109.09315 * 174.19238 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5772 -1.6379 -1.1339 6 6 1.7963 -0.1764 -2.4795 7 7 1.8755 -0.9405 -3.5471 8 14 1.3640 1.6323 -2.6554 9 1 1.1604 1.9553 -4.0905 10 1 0.1173 1.9189 -1.9014 11 1 2.4713 2.4608 -2.1144 12 7 2.0183 -0.6907 1.1962 13 6 2.7442 0.1617 2.1151 14 6 3.4981 -0.6281 3.1731 15 6 2.5487 -1.3768 4.0597 16 8 2.4132 -1.0147 5.2092 17 7 1.8535 -2.4195 3.6327 18 6 2.0977 -2.9518 2.2911 19 6 1.7129 -1.9665 1.2397 20 8 1.0473 -2.3925 0.3197 21 1 -0.3633 -1.0187 -0.1352 22 1 -0.3633 0.3923 0.9498 23 1 -0.3633 0.6264 -0.8147 24 1 2.1710 -1.8606 -3.4640 25 1 3.4566 0.7628 1.5500 26 1 2.0379 0.8284 2.6098 27 1 4.1655 -1.3370 2.6832 28 1 4.0888 0.0585 3.7795 29 1 1.1863 -2.8285 4.2057 30 1 3.1564 -3.1909 2.1897 31 1 1.5134 -3.8621 2.1569 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261037876.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:12 Heat of formation + Delta-G solvation = -74.972554 kcal Electronic energy + Delta-G solvation = -16500.163815 eV Core-core repulsion = 13781.396028 eV Total energy + Delta-G solvation = -2718.767788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.11728 -40.39582 -37.13091 -36.41407 -34.93642 -32.92045 -30.92193 -28.51403 -26.75848 -26.17348 -22.96024 -21.52167 -20.25503 -19.56626 -18.46045 -17.97832 -17.55517 -16.62034 -16.01854 -15.81749 -15.38701 -15.19396 -14.72554 -14.62302 -13.96890 -13.82395 -13.54713 -13.25622 -13.11714 -12.68386 -12.64548 -12.27353 -11.86506 -11.63462 -11.26413 -11.04675 -10.90948 -10.34019 -9.93543 -9.47225 -8.62118 -6.18042 1.40655 1.49185 1.57032 1.69843 1.73425 2.27406 2.41611 2.57069 3.14896 3.35702 3.71959 3.82031 4.04315 4.10203 4.45457 4.51943 4.59502 4.64669 4.74747 4.79887 4.92103 4.97750 5.50296 5.63280 5.66193 5.98034 6.09193 6.14054 6.68788 6.90398 7.06698 7.45647 7.59690 8.74156 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.043000 B = 0.009172 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.000015 B = 3052.199861 C = 3335.039546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.230 3.770 3 H 0.056 0.944 4 C -0.566 4.566 5 H 0.015 0.985 6 C -0.033 4.033 7 N -0.945 5.945 8 Si 1.080 2.920 9 H -0.295 1.295 10 H -0.247 1.247 11 H -0.250 1.250 12 N -0.584 5.584 13 C 0.120 3.880 14 C -0.145 4.145 15 C 0.518 3.482 16 O -0.590 6.590 17 N -0.699 5.699 18 C 0.111 3.889 19 C 0.477 3.523 20 O -0.570 6.570 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.245 0.755 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.140 0.860 29 H 0.415 0.585 30 H 0.118 0.882 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 1.818 14.221 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.126 3.874 3 H 0.074 0.926 4 C -0.605 4.605 5 H 0.033 0.967 6 C -0.229 4.229 7 N -0.582 5.582 8 Si 0.901 3.099 9 H -0.222 1.222 10 H -0.172 1.172 11 H -0.174 1.174 12 N -0.315 5.315 13 C -0.003 4.003 14 C -0.185 4.185 15 C 0.305 3.695 16 O -0.471 6.471 17 N -0.352 5.352 18 C -0.017 4.017 19 C 0.263 3.737 20 O -0.448 6.448 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.121 0.879 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.158 0.842 29 H 0.254 0.746 30 H 0.136 0.864 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.352 2.974 13.200 13.734 hybrid contribution 0.156 -2.021 0.694 2.143 sum 2.508 0.952 13.894 14.151 Atomic orbital electron populations 1.22412 0.98311 1.01431 0.99539 1.19089 0.91547 0.92983 0.83789 0.92645 1.22092 1.38053 1.07661 0.92688 0.96654 1.27192 0.94754 1.08917 0.92019 1.70987 1.45794 1.08241 1.33173 0.83664 0.79088 0.70747 0.76356 1.22193 1.17198 1.17390 1.46881 1.53344 1.08814 1.22411 1.21099 0.96339 0.92575 0.90265 1.21756 0.97878 1.01577 0.97298 1.20362 0.81143 0.80075 0.87886 1.90741 1.67899 1.67934 1.20536 1.45314 1.41045 1.32481 1.16343 1.21552 1.05641 0.95762 0.78726 1.20105 0.81610 0.83402 0.88589 1.90840 1.39716 1.76209 1.38069 0.93762 0.93747 0.92964 0.94563 0.87946 0.90790 0.87322 0.84196 0.74608 0.86414 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.05 8.67 71.98 0.62 -6.42 16 2 C 0.23 10.20 2.04 44.24 0.09 10.29 16 3 H 0.06 2.24 6.19 -2.39 -0.01 2.22 16 4 C -0.57 -31.69 7.39 25.60 0.19 -31.50 16 5 H 0.02 0.96 6.97 -2.91 -0.02 0.94 16 6 C -0.03 -1.88 5.33 84.65 0.45 -1.43 16 7 N -0.94 -60.69 13.70 21.45 0.29 -60.39 16 8 Si 1.08 48.18 26.51 68.60 1.82 50.00 16 9 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 10 H -0.25 -9.86 5.55 99.48 0.55 -9.31 16 11 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 12 N -0.58 -21.13 2.81 -815.09 -2.29 -23.42 16 13 C 0.12 3.05 5.71 86.37 0.49 3.54 16 14 C -0.15 -2.95 5.42 29.29 0.16 -2.79 16 15 C 0.52 12.95 7.16 87.78 0.63 13.58 16 16 O -0.59 -18.69 17.83 -3.03 -0.05 -18.75 16 17 N -0.70 -15.54 5.41 -473.52 -2.56 -18.11 16 18 C 0.11 2.69 6.21 85.17 0.53 3.22 16 19 C 0.48 17.85 6.43 87.71 0.56 18.41 16 20 O -0.57 -28.07 12.00 -3.04 -0.04 -28.10 16 21 H 0.04 2.23 6.03 -2.39 -0.01 2.22 16 22 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.05 2.31 4.99 -2.39 -0.01 2.30 16 24 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 25 H 0.10 2.37 7.91 -2.39 -0.02 2.35 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.11 1.94 7.34 -2.39 -0.02 1.92 16 28 H 0.14 2.20 8.10 -2.39 -0.02 2.18 16 29 H 0.42 7.99 8.89 -92.71 -0.82 7.16 16 30 H 0.12 2.33 7.53 -2.39 -0.02 2.31 16 31 H 0.13 2.87 8.04 -2.39 -0.02 2.85 16 Total: -1.00 -78.79 249.37 1.03 -77.75 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.14 Total: 14.12 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 3.73 Total: 6.90 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -4.56 Total: -101.91 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.85 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.82 Total: 50.00 kcal Total: -78.79 1.03 -77.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037876.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.778 kcal (2) G-P(sol) polarization free energy of solvation -78.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds