Wall clock time and date at job start Mon Mar 30 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36235 * 116.99793 * 2 1 4 4 C 1.40112 * 126.05403 * 0.02562 * 3 2 1 5 5 N 1.30863 * 108.35754 * 179.97438 * 4 3 2 6 6 N 1.40078 * 108.32267 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.07712 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47141 * 304.97642 * 7 6 5 9 9 O 1.42904 * 109.46995 * 179.97438 * 8 7 6 10 10 C 1.42901 * 114.00225 * 180.02562 * 9 8 7 11 11 C 1.50690 * 109.47365 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00198 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99924 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99741 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46715 * 90.00474 * 15 13 11 17 17 H 1.48504 * 109.46975 * 210.00265 * 15 13 11 18 18 H 1.48499 * 109.47100 * 330.00653 * 15 13 11 19 19 C 1.35589 * 126.04918 * 179.71253 * 3 2 1 20 20 H 1.08999 * 109.47144 * 59.99879 * 1 2 3 21 21 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47198 * 299.99572 * 1 2 3 23 23 H 1.08002 * 125.81777 * 359.93111 * 4 3 2 24 24 H 1.09005 * 109.46601 * 64.97535 * 7 6 5 25 25 H 1.09003 * 109.46969 * 184.97507 * 7 6 5 26 26 H 1.08996 * 109.47176 * 300.00020 * 8 7 6 27 27 H 1.09003 * 109.47299 * 60.00067 * 8 7 6 28 28 H 1.08999 * 109.46838 * 300.00210 * 10 9 8 29 29 H 1.09006 * 109.46782 * 59.99429 * 10 9 8 30 30 H 0.97001 * 119.99499 * 179.97438 * 14 13 11 31 31 H 1.07999 * 126.21012 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.4125 2.4629 0.0005 5 7 2.3329 3.3931 0.0009 6 7 3.5879 2.7709 0.0000 7 6 4.8868 3.4486 0.0006 8 6 4.9564 4.4189 -1.1802 9 8 6.2231 5.0803 -1.1792 10 6 6.3920 6.0143 -2.2475 11 6 7.7554 6.6485 -2.1494 12 1 8.4259 6.3668 -1.3509 13 6 8.1467 7.5891 -3.0785 14 7 9.3368 8.1422 -2.9932 15 14 6.9868 8.0768 -4.4593 16 1 6.1488 9.2215 -4.0206 17 1 7.7768 8.4706 -5.6535 18 1 6.1129 6.9259 -4.8013 19 6 3.3865 1.4272 0.0055 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.3454 2.6294 -0.0001 24 1 5.0079 4.0010 0.9325 25 1 5.6825 2.7090 -0.0894 26 1 4.8352 3.8665 -2.1120 27 1 4.1607 5.1584 -1.0902 28 1 6.3009 5.4953 -3.2016 29 1 5.6258 6.7866 -2.1794 30 1 9.6122 8.8037 -3.6471 31 1 4.1536 0.6670 0.0103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385204418.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:31 Heat of formation + Delta-G solvation = -0.366007 kcal Electronic energy + Delta-G solvation = -14765.082615 eV Core-core repulsion = 12049.550010 eV Total energy + Delta-G solvation = -2715.532605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.33995 -38.17091 -37.12314 -33.54439 -32.55781 -30.34399 -28.88307 -27.40433 -26.75886 -23.32247 -21.93390 -21.19872 -20.59140 -18.01838 -16.97450 -16.12059 -16.08217 -15.60006 -15.30830 -15.00397 -14.69773 -14.20813 -14.12788 -13.10024 -12.98959 -12.74853 -12.47729 -12.06148 -11.56602 -11.34615 -11.14180 -10.90778 -10.80085 -10.55463 -9.92831 -9.51480 -9.27626 -8.97799 -8.57127 -7.98599 -6.17022 -4.17060 1.74952 2.26172 2.67773 3.22193 3.29256 3.30693 3.33441 4.30787 4.33688 4.63871 4.84966 4.94854 5.01112 5.03354 5.14352 5.29073 5.33303 5.41995 5.47596 5.60264 5.91357 5.96972 6.18163 6.51626 6.86321 6.91041 7.29591 7.51046 7.55315 7.86269 8.55681 8.92807 9.41381 10.95756 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.063574 B = 0.004282 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.325399 B = 6537.898146 C = 6776.680063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C -0.040 4.040 4 C -0.010 4.010 5 N -0.266 5.266 6 N -0.355 5.355 7 C 0.142 3.858 8 C 0.050 3.950 9 O -0.380 6.380 10 C 0.172 3.828 11 C -0.523 4.523 12 H 0.084 0.916 13 C 0.074 3.926 14 N -0.893 5.893 15 Si 0.876 3.124 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.028 3.972 20 H 0.049 0.951 21 H 0.095 0.905 22 H 0.049 0.951 23 H 0.182 0.818 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.005 0.995 29 H 0.002 0.998 30 H 0.268 0.732 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -14.520 5.042 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.221 6.221 3 C -0.094 4.094 4 C -0.196 4.196 5 N -0.090 5.090 6 N -0.144 5.144 7 C 0.021 3.979 8 C -0.029 4.029 9 O -0.298 6.298 10 C 0.097 3.903 11 C -0.561 4.561 12 H 0.102 0.898 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.702 3.298 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.191 1.191 19 C -0.116 4.116 20 H 0.068 0.932 21 H 0.113 0.887 22 H 0.068 0.932 23 H 0.199 0.801 24 H 0.115 0.885 25 H 0.126 0.874 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.019 0.981 30 H 0.078 0.922 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.968 -13.313 5.081 21.402 hybrid contribution -1.183 -0.338 -1.011 1.592 sum -17.151 -13.651 4.069 22.295 Atomic orbital electron populations 1.22914 0.78776 1.03383 1.00940 1.85980 1.20570 1.24079 1.91476 1.18624 0.91565 0.85393 1.13844 1.23990 0.99967 0.90071 1.05572 1.77319 0.88156 1.21675 1.21830 1.48386 1.05742 1.03506 1.56779 1.21556 0.78540 0.96841 1.00970 1.22422 0.89210 0.95158 0.96095 1.87829 1.31320 1.57932 1.52767 1.20646 0.97881 0.86837 0.84922 1.20859 0.98538 1.22386 1.14287 0.89821 1.24752 0.95232 0.95427 0.97420 1.69868 1.18839 1.28051 1.36376 0.86855 0.81257 0.79535 0.82154 1.19796 1.20644 1.19111 1.21592 0.95871 0.86574 1.07596 0.93191 0.88658 0.93214 0.80062 0.88541 0.87417 0.93790 0.92735 0.97716 0.98051 0.92241 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.15 101.05 1.03 1.28 16 2 O -0.31 -3.46 10.59 -20.49 -0.22 -3.68 16 3 C -0.04 -0.50 6.96 -39.83 -0.28 -0.77 16 4 C -0.01 -0.12 11.07 -17.26 -0.19 -0.31 16 5 N -0.27 -3.99 12.41 30.68 0.38 -3.61 16 6 N -0.36 -4.99 3.71 -61.05 -0.23 -5.22 16 7 C 0.14 1.98 6.89 -4.04 -0.03 1.95 16 8 C 0.05 0.88 6.13 37.15 0.23 1.11 16 9 O -0.38 -8.63 10.33 -35.23 -0.36 -9.00 16 10 C 0.17 4.37 4.76 36.00 0.17 4.54 16 11 C -0.52 -15.45 9.99 -34.44 -0.34 -15.79 16 12 H 0.08 2.68 8.06 -52.48 -0.42 2.26 16 13 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -27.39 13.96 55.43 0.77 -26.62 16 15 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 19 C 0.03 0.35 11.51 -16.71 -0.19 0.15 16 20 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 21 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.30 8.10 -51.93 -0.42 -0.12 16 23 H 0.18 1.62 7.69 -52.49 -0.40 1.21 16 24 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.11 1.27 8.08 -51.93 -0.42 0.85 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.01 0.13 7.20 -51.93 -0.37 -0.25 16 29 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 275.87 15.07 4.16 4.16 Total: -1.00 -33.47 275.87 -4.00 -37.48 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -4.13 Total: -4.42 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.29 Total: -5.78 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.93 Total: -35.45 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.58 Total: -12.67 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.47 -4.00 -37.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385204418.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.109 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds