Wall clock time and date at job start Mon Mar 30 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36235 * 116.99793 * 2 1 4 4 C 1.40112 * 126.05403 * 0.02562 * 3 2 1 5 5 N 1.30863 * 108.35754 * 179.97438 * 4 3 2 6 6 N 1.40078 * 108.32267 * 0.02562 * 5 4 3 7 7 C 1.46504 * 126.07712 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47141 * 304.97642 * 7 6 5 9 9 O 1.42904 * 109.46995 * 179.97438 * 8 7 6 10 10 C 1.42901 * 114.00225 * 180.02562 * 9 8 7 11 11 C 1.50690 * 109.47365 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00198 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99924 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99741 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46715 * 90.00474 * 15 13 11 17 17 H 1.48504 * 109.46975 * 210.00265 * 15 13 11 18 18 H 1.48499 * 109.47100 * 330.00653 * 15 13 11 19 19 C 1.35589 * 126.04918 * 179.71253 * 3 2 1 20 20 H 1.08999 * 109.47144 * 59.99879 * 1 2 3 21 21 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47198 * 299.99572 * 1 2 3 23 23 H 1.08002 * 125.81777 * 359.93111 * 4 3 2 24 24 H 1.09005 * 109.46601 * 64.97535 * 7 6 5 25 25 H 1.09003 * 109.46969 * 184.97507 * 7 6 5 26 26 H 1.08996 * 109.47176 * 300.00020 * 8 7 6 27 27 H 1.09003 * 109.47299 * 60.00067 * 8 7 6 28 28 H 1.08999 * 109.46838 * 300.00210 * 10 9 8 29 29 H 1.09006 * 109.46782 * 59.99429 * 10 9 8 30 30 H 0.97001 * 119.99499 * 179.97438 * 14 13 11 31 31 H 1.07999 * 126.21012 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.4125 2.4629 0.0005 5 7 2.3329 3.3931 0.0009 6 7 3.5879 2.7709 0.0000 7 6 4.8868 3.4486 0.0006 8 6 4.9564 4.4189 -1.1802 9 8 6.2231 5.0803 -1.1792 10 6 6.3920 6.0143 -2.2475 11 6 7.7554 6.6485 -2.1494 12 1 8.4259 6.3668 -1.3509 13 6 8.1467 7.5891 -3.0785 14 7 9.3368 8.1422 -2.9932 15 14 6.9868 8.0768 -4.4593 16 1 6.1488 9.2215 -4.0206 17 1 7.7768 8.4706 -5.6535 18 1 6.1129 6.9259 -4.8013 19 6 3.3865 1.4272 0.0055 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.3454 2.6294 -0.0001 24 1 5.0079 4.0010 0.9325 25 1 5.6825 2.7090 -0.0894 26 1 4.8352 3.8665 -2.1120 27 1 4.1607 5.1584 -1.0902 28 1 6.3009 5.4953 -3.2016 29 1 5.6258 6.7866 -2.1794 30 1 9.6122 8.8037 -3.6471 31 1 4.1536 0.6670 0.0103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385204418.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:31 Heat of formation + Delta-G solvation = -24.990543 kcal Electronic energy + Delta-G solvation = -14766.150415 eV Core-core repulsion = 12049.550010 eV Total energy + Delta-G solvation = -2716.600405 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.28152 -39.13038 -38.67055 -35.12798 -34.33972 -31.38533 -30.46629 -28.82721 -27.52445 -24.60186 -23.97804 -22.14334 -21.57791 -19.14955 -18.90727 -17.54390 -17.25438 -16.78721 -16.52019 -16.16993 -15.99076 -15.58643 -15.23535 -14.75174 -14.41703 -14.25374 -13.56767 -13.06781 -13.04802 -12.78412 -12.61358 -12.40593 -12.01393 -11.87242 -11.58377 -11.44785 -10.97447 -10.54646 -10.50870 -8.89503 -8.40773 -6.49397 0.78335 1.26040 1.32203 1.34205 1.44904 1.77238 2.26297 2.58050 2.91618 2.93653 3.73756 3.80247 3.97845 4.07738 4.23526 4.37392 4.43309 4.50023 4.52914 4.68117 4.69662 4.80469 4.83545 4.91919 5.27759 5.36772 5.80896 5.93258 6.49715 6.51993 6.59385 6.62659 7.14610 8.75991 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.063574 B = 0.004282 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.325399 B = 6537.898146 C = 6776.680063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.323 6.323 3 C -0.047 4.047 4 C -0.003 4.003 5 N -0.309 5.309 6 N -0.367 5.367 7 C 0.150 3.850 8 C 0.050 3.950 9 O -0.398 6.398 10 C 0.181 3.819 11 C -0.549 4.549 12 H 0.036 0.964 13 C 0.017 3.983 14 N -0.939 5.939 15 Si 0.952 3.048 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.248 1.248 19 C 0.025 3.975 20 H 0.057 0.943 21 H 0.116 0.884 22 H 0.059 0.941 23 H 0.210 0.790 24 H 0.096 0.904 25 H 0.131 0.869 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.274 0.726 31 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.927 -15.507 4.156 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.236 6.236 3 C -0.101 4.101 4 C -0.189 4.189 5 N -0.133 5.133 6 N -0.156 5.156 7 C 0.030 3.970 8 C -0.028 4.028 9 O -0.317 6.317 10 C 0.106 3.894 11 C -0.586 4.586 12 H 0.055 0.945 13 C -0.182 4.182 14 N -0.578 5.578 15 Si 0.773 3.227 16 H -0.184 1.184 17 H -0.195 1.195 18 H -0.172 1.172 19 C -0.119 4.119 20 H 0.076 0.924 21 H 0.134 0.866 22 H 0.078 0.922 23 H 0.227 0.773 24 H 0.115 0.885 25 H 0.149 0.851 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.084 0.916 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.212 -14.325 4.215 23.551 hybrid contribution -0.523 -0.137 -0.640 0.838 sum -18.736 -14.462 3.575 23.937 Atomic orbital electron populations 1.23211 0.76709 1.05143 1.01804 1.85970 1.22744 1.23470 1.91426 1.18793 0.91819 0.85878 1.13635 1.24490 1.00977 0.89733 1.03656 1.77276 0.88969 1.23185 1.23828 1.48319 1.05313 1.04090 1.57888 1.21433 0.79630 0.96822 0.99161 1.22586 0.86649 0.95405 0.98181 1.87775 1.34176 1.57808 1.51935 1.20365 0.95504 0.87537 0.86034 1.21126 1.00186 1.23693 1.13618 0.94512 1.25785 0.97137 0.94901 1.00382 1.70013 1.21110 1.28778 1.37853 0.85655 0.78946 0.79930 0.78123 1.18439 1.19535 1.17197 1.22114 0.96892 0.86293 1.06612 0.92412 0.86590 0.92212 0.77324 0.88530 0.85121 0.93246 0.93335 0.96777 0.97145 0.91640 0.77509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.15 113.37 1.15 1.45 16 2 O -0.32 -6.53 10.59 -96.23 -1.02 -7.55 16 3 C -0.05 -1.07 6.96 22.11 0.15 -0.91 16 4 C 0.00 -0.06 11.07 85.29 0.94 0.89 16 5 N -0.31 -8.90 12.41 -56.85 -0.71 -9.61 16 6 N -0.37 -9.80 3.71 -347.06 -1.29 -11.08 16 7 C 0.15 4.04 6.89 86.38 0.59 4.64 16 8 C 0.05 1.72 6.13 71.98 0.44 2.16 16 9 O -0.40 -18.07 10.33 -148.98 -1.54 -19.61 16 10 C 0.18 9.10 4.76 71.23 0.34 9.44 16 11 C -0.55 -33.18 9.99 25.60 0.26 -32.93 16 12 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 13 C 0.02 0.97 5.47 84.66 0.46 1.44 16 14 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 15 Si 0.95 43.31 27.47 68.60 1.88 45.19 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 19 C 0.02 0.56 11.51 83.45 0.96 1.52 16 20 H 0.06 0.58 8.10 -2.39 -0.02 0.56 16 21 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.06 0.57 8.10 -2.39 -0.02 0.55 16 23 H 0.21 3.21 7.69 -2.91 -0.02 3.18 16 24 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 25 H 0.13 2.86 8.08 -2.39 -0.02 2.84 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 29 H 0.01 0.52 7.57 -2.38 -0.02 0.50 16 30 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.21 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -73.09 275.87 3.99 -69.10 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.05 Total: 4.20 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 5.30 Total: -12.31 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.69 Total: -79.02 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -2.56 Total: -27.15 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -73.09 3.99 -69.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385204418.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.106 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds