Wall clock time and date at job start Mon Mar 30 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46982 * 2 1 4 4 C 1.50698 * 109.47663 * 240.00405 * 2 1 3 5 5 H 1.07995 * 120.00070 * 244.91806 * 4 2 1 6 6 C 1.37878 * 120.00039 * 64.90998 * 4 2 1 7 7 N 1.31516 * 120.00223 * 196.88765 * 6 4 2 8 8 Si 1.86802 * 120.00003 * 16.88415 * 6 4 2 9 9 H 1.48500 * 109.47130 * 95.83606 * 8 6 4 10 10 H 1.48501 * 109.47375 * 215.83672 * 8 6 4 11 11 H 1.48501 * 109.47002 * 335.83891 * 8 6 4 12 12 C 1.50701 * 109.47364 * 119.99642 * 2 1 3 13 13 O 1.21287 * 119.99515 * 94.53946 * 12 2 1 14 14 N 1.34775 * 120.00171 * 274.53862 * 12 2 1 15 15 C 1.46977 * 127.03172 * 356.19711 * 14 12 2 16 16 C 1.50770 * 106.56285 * 179.78976 * 15 14 12 17 17 O 1.21283 * 125.42785 * 180.28642 * 16 15 14 18 18 N 1.34307 * 109.15141 * 0.40314 * 16 15 14 19 19 C 1.46501 * 124.85522 * 179.85391 * 18 16 15 20 20 C 1.46223 * 110.28863 * 359.58917 * 18 16 15 21 21 H 1.08995 * 109.47357 * 299.30005 * 1 2 3 22 22 H 1.08998 * 109.47116 * 59.30617 * 1 2 3 23 23 H 1.08998 * 109.46750 * 179.29979 * 1 2 3 24 24 H 0.96994 * 120.00296 * 179.97438 * 7 6 4 25 25 H 1.09001 * 110.04167 * 299.29678 * 15 14 12 26 26 H 1.08998 * 110.04302 * 60.69717 * 15 14 12 27 27 H 1.09000 * 109.46897 * 269.69741 * 19 18 16 28 28 H 1.09002 * 109.46959 * 29.69607 * 19 18 16 29 29 H 1.08993 * 109.46836 * 149.69686 * 19 18 16 30 30 H 1.08996 * 109.75350 * 119.91780 * 20 18 16 31 31 H 1.09001 * 109.75697 * 240.61411 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.5863 -1.6323 -1.1334 6 6 1.7850 -0.1831 -2.4802 7 7 1.9170 -0.9368 -3.5498 8 14 1.2621 1.6018 -2.6541 9 1 2.4526 2.4403 -2.9453 10 1 0.2856 1.7255 -3.7661 11 1 0.6323 2.0586 -1.3892 12 6 2.0324 -0.7103 1.2305 13 8 2.3129 -1.8891 1.1781 14 7 2.1700 -0.0357 2.3891 15 6 1.9518 1.4012 2.6080 16 6 2.2296 1.6607 4.0670 17 8 2.1472 2.7382 4.6176 18 7 2.5853 0.5091 4.6595 19 6 2.9339 0.3687 6.0755 20 6 2.5689 -0.5858 3.6904 21 1 -0.3634 0.5029 0.8961 22 1 -0.3633 0.5246 -0.8837 23 1 -0.3633 -1.0276 -0.0126 24 1 1.7425 -0.5660 -4.4290 25 1 2.6329 1.9815 1.9856 26 1 0.9195 1.6621 2.3751 27 1 4.0062 0.5178 6.2022 28 1 2.3921 1.1135 6.6585 29 1 2.6626 -0.6294 6.4192 30 1 3.5631 -1.0261 3.6151 31 1 1.8526 -1.3451 4.0045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597478687.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:44 Heat of formation + Delta-G solvation = -70.194212 kcal Electronic energy + Delta-G solvation = -15872.767243 eV Core-core repulsion = 13154.206660 eV Total energy + Delta-G solvation = -2718.560583 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.01685 -40.16738 -37.77721 -35.80924 -35.10232 -33.18769 -29.98164 -28.68418 -27.18201 -26.00378 -23.90854 -21.25385 -20.68611 -18.90796 -18.12754 -17.89931 -17.04739 -16.80473 -16.52975 -15.95127 -15.73258 -14.99650 -14.83902 -14.69646 -14.19926 -13.99667 -13.84387 -13.40268 -13.31609 -13.21027 -12.81361 -12.53507 -12.24563 -11.48981 -11.36764 -11.31882 -10.68881 -10.58345 -10.39170 -9.61539 -8.28734 -6.31503 1.25802 1.40359 1.43794 1.44901 1.54352 1.67091 1.95304 2.38648 3.04416 3.09190 3.63516 4.07830 4.19782 4.28582 4.31171 4.41123 4.50278 4.61528 4.68944 4.77197 4.83815 4.86807 5.07055 5.21365 5.47274 5.57399 5.79738 6.17683 6.39056 6.78332 6.82377 7.17363 7.32169 8.88597 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.041307 B = 0.007769 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.694756 B = 3603.164424 C = 4056.054516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 H 0.069 0.931 4 C -0.529 4.529 5 H 0.028 0.972 6 C 0.019 3.981 7 N -0.941 5.941 8 Si 0.933 3.067 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.210 1.210 12 C 0.564 3.436 13 O -0.566 6.566 14 N -0.635 5.635 15 C 0.066 3.934 16 C 0.522 3.478 17 O -0.549 6.549 18 N -0.623 5.623 19 C 0.097 3.903 20 C 0.332 3.668 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.268 0.732 25 H 0.120 0.880 26 H 0.127 0.873 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 6.512 17.098 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.015 4.015 3 H 0.087 0.913 4 C -0.567 4.567 5 H 0.046 0.954 6 C -0.179 4.179 7 N -0.579 5.579 8 Si 0.755 3.245 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.132 1.132 12 C 0.355 3.645 13 O -0.443 6.443 14 N -0.374 5.374 15 C -0.059 4.059 16 C 0.309 3.691 17 O -0.428 6.428 18 N -0.358 5.358 19 C -0.043 4.043 20 C 0.124 3.876 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.145 0.855 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.261 6.327 17.201 18.371 hybrid contribution 0.158 0.110 -0.736 0.761 sum -1.103 6.437 16.466 17.714 Atomic orbital electron populations 1.21966 0.94125 1.01256 1.01695 1.19185 0.95598 0.97203 0.89537 0.91339 1.20906 1.36584 1.08959 0.90261 0.95398 1.25902 0.94508 1.02749 0.94757 1.70141 1.50378 1.37980 0.99413 0.86050 0.78773 0.79294 0.80403 1.20071 1.21099 1.13213 1.20833 0.75061 0.86227 0.82341 1.90615 1.51114 1.18255 1.84290 1.48343 1.70539 1.09836 1.08673 1.22094 1.06469 0.82543 0.94810 1.20573 0.75753 0.83776 0.88972 1.90755 1.54680 1.26562 1.70760 1.48416 1.67344 1.08575 1.11443 1.21824 1.01727 1.04738 0.76009 1.21348 1.01946 0.87152 0.77137 0.90972 0.92300 0.94183 0.92301 0.86176 0.85510 0.90967 0.90271 0.87915 0.89965 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.56 71.98 0.62 -4.39 16 2 C 0.01 0.28 1.76 -12.29 -0.02 0.26 16 3 H 0.07 2.64 5.91 -2.39 -0.01 2.62 16 4 C -0.53 -30.11 8.78 25.60 0.22 -29.88 16 5 H 0.03 1.87 7.24 -2.91 -0.02 1.85 16 6 C 0.02 1.08 5.34 84.65 0.45 1.53 16 7 N -0.94 -58.15 13.96 21.45 0.30 -57.86 16 8 Si 0.93 39.99 25.85 68.60 1.77 41.76 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.21 -7.45 5.52 99.48 0.55 -6.90 16 12 C 0.56 23.22 6.98 87.66 0.61 23.83 16 13 O -0.57 -28.28 16.20 -3.05 -0.05 -28.33 16 14 N -0.64 -19.26 3.36 -836.22 -2.81 -22.07 16 15 C 0.07 1.64 6.31 85.56 0.54 2.18 16 16 C 0.52 13.21 8.13 87.75 0.71 13.92 16 17 O -0.55 -16.93 17.67 -3.04 -0.05 -16.99 16 18 N -0.62 -13.06 3.33 -859.42 -2.86 -15.92 16 19 C 0.10 1.31 11.02 127.77 1.41 2.72 16 20 C 0.33 7.90 7.57 170.95 1.29 9.19 16 21 H 0.07 2.08 7.67 -2.39 -0.02 2.06 16 22 H 0.06 2.21 5.12 -2.39 -0.01 2.20 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.12 2.77 8.02 -2.39 -0.02 2.75 16 26 H 0.13 2.70 7.67 -2.39 -0.02 2.68 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.13 7.97 -2.39 -0.02 1.11 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -75.49 263.17 3.11 -72.38 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.97 Total: 7.66 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 5.84 Total: 19.35 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -5.37 Total: -95.84 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.10 Total: -45.32 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.77 Total: 41.76 kcal Total: -75.49 3.11 -72.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597478687.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.189 kcal (2) G-P(sol) polarization free energy of solvation -75.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds