Wall clock time and date at job start Mon Mar 30 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47113 * 2 1 4 4 C 1.46758 * 124.35032 * 269.95398 * 3 2 1 5 5 C 1.54681 * 105.53534 * 196.94274 * 4 3 2 6 6 C 1.54626 * 101.66980 * 334.73891 * 5 4 3 7 7 H 1.09001 * 110.49221 * 265.90593 * 6 5 4 8 8 N 1.46503 * 110.48529 * 143.39454 * 6 5 4 9 9 C 1.34786 * 119.99926 * 156.84529 * 8 6 5 10 10 O 1.21686 * 119.99696 * 359.97438 * 9 8 6 11 11 C 1.46373 * 119.99966 * 179.97438 * 9 8 6 12 12 H 1.08002 * 119.99728 * 6.24178 * 11 9 8 13 13 C 1.40042 * 119.99893 * 186.24264 * 11 9 8 14 14 N 1.30671 * 119.99961 * 184.67122 * 13 11 9 15 15 Si 1.86802 * 120.00099 * 4.67753 * 13 11 9 16 16 H 1.48505 * 109.47216 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.46975 * 299.99476 * 15 13 11 18 18 H 1.48499 * 109.47526 * 59.99639 * 15 13 11 19 19 C 1.34424 * 124.34797 * 89.97382 * 3 2 1 20 20 O 1.21275 * 124.94391 * 359.54313 * 19 3 2 21 21 H 1.08989 * 109.47263 * 60.00047 * 1 2 3 22 22 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47017 * 299.99353 * 1 2 3 24 24 H 1.08998 * 109.47535 * 240.00100 * 2 1 3 25 25 H 1.09003 * 109.47481 * 119.99950 * 2 1 3 26 26 H 1.08999 * 110.24644 * 316.03861 * 4 3 2 27 27 H 1.09006 * 110.24809 * 78.03175 * 4 3 2 28 28 H 1.09001 * 111.09042 * 216.62545 * 5 4 3 29 29 H 1.09000 * 110.94996 * 92.79656 * 5 4 3 30 30 H 0.96996 * 120.00087 * 336.84039 * 8 6 5 31 31 H 0.96993 * 120.00036 * 354.90301 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2953 2.1617 -1.2116 5 6 3.1746 3.3471 -0.7489 6 6 2.7696 3.4754 0.7378 7 1 1.9754 4.2128 0.8547 8 7 3.9294 3.8389 1.5557 9 6 3.7511 4.4463 2.7457 10 8 2.6268 4.6931 3.1404 11 6 4.9099 4.8090 3.5631 12 1 5.9082 4.6828 3.1708 13 6 4.7241 5.3197 4.8537 14 7 5.7522 5.7288 5.5488 15 14 3.0064 5.4160 5.5818 16 1 3.0801 5.9889 6.9499 17 1 2.1545 6.2818 4.7274 18 1 2.4193 4.0536 5.6471 19 6 2.2707 2.0965 1.1098 20 8 2.1198 1.6950 2.2442 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8335 1.5525 -1.9378 27 1 1.3649 2.5307 -1.6436 28 1 2.9299 4.2554 -1.2996 29 1 4.2336 3.1077 -0.8454 30 1 4.8256 3.6424 1.2409 31 1 6.6501 5.6109 5.2017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619825516.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:23 Heat of formation + Delta-G solvation = -86.429082 kcal Electronic energy + Delta-G solvation = -15893.251390 eV Core-core repulsion = 13173.986810 eV Total energy + Delta-G solvation = -2719.264580 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27795 -37.55091 -36.08905 -34.36221 -32.80824 -31.96713 -28.97252 -27.22231 -25.44355 -23.52030 -21.59432 -20.12467 -18.95226 -18.01502 -16.68318 -16.29953 -15.68225 -15.12117 -14.22101 -14.12869 -13.59171 -13.55799 -13.43301 -12.97996 -12.65975 -12.43947 -12.14712 -11.97661 -11.90863 -11.73219 -11.19346 -10.87897 -10.38756 -10.14852 -9.60389 -9.14516 -8.88665 -8.59617 -7.94762 -7.83094 -6.93614 -4.87308 2.95314 3.11007 3.69014 3.77353 4.14336 4.36656 4.37103 4.60150 4.67434 4.70717 4.98925 5.02297 5.15534 5.20783 5.30320 5.40083 5.57951 5.62131 5.68167 5.79460 5.90728 6.10847 6.12253 6.71670 7.27010 7.49998 7.62459 7.79128 8.14032 8.58643 8.88984 9.05672 10.11046 10.39601 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.042585 B = 0.007763 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.355920 B = 3606.078675 C = 3951.608077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.632 5.632 4 C 0.109 3.891 5 C -0.138 4.138 6 C 0.125 3.875 7 H 0.115 0.885 8 N -0.737 5.737 9 C 0.556 3.444 10 O -0.607 6.607 11 C -0.596 4.596 12 H 0.070 0.930 13 C 0.063 3.937 14 N -0.834 5.834 15 Si 1.127 2.873 16 H -0.323 1.323 17 H -0.281 1.281 18 H -0.287 1.287 19 C 0.501 3.499 20 O -0.502 6.502 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.390 0.610 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -8.342 -16.298 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.370 5.370 4 C -0.014 4.014 5 C -0.177 4.177 6 C 0.014 3.986 7 H 0.133 0.867 8 N -0.389 5.389 9 C 0.365 3.635 10 O -0.499 6.499 11 C -0.632 4.632 12 H 0.088 0.912 13 C -0.155 4.155 14 N -0.462 5.462 15 Si 0.959 3.041 16 H -0.255 1.255 17 H -0.208 1.208 18 H -0.214 1.214 19 C 0.286 3.714 20 O -0.374 6.374 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.223 0.777 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.967 -7.949 -14.107 17.628 hybrid contribution 1.515 -0.819 -1.836 2.517 sum -5.452 -8.768 -15.943 18.994 Atomic orbital electron populations 1.22162 0.96126 1.01974 1.02501 1.21258 0.94179 0.81740 1.02663 1.48406 1.67579 1.13527 1.07465 1.22002 0.99184 0.92697 0.87564 1.22932 1.00718 0.98673 0.95360 1.21243 0.93232 0.94112 0.89984 0.86731 1.45652 1.05887 1.65417 1.21945 1.18479 0.89981 0.75887 0.79201 1.90154 1.26976 1.62100 1.70656 1.21997 0.92756 1.46927 1.01530 0.91206 1.27136 1.06954 0.88229 0.93141 1.70662 1.00575 1.34610 1.40356 0.82439 0.71675 0.78279 0.71688 1.25489 1.20813 1.21420 1.21795 0.76787 0.88405 0.84380 1.90730 1.50901 1.74673 1.21079 0.92600 0.91744 0.92094 0.90835 0.90297 0.90667 0.91325 0.88794 0.89699 0.77675 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.12 1.44 6.65 -4.04 -0.03 1.41 16 3 N -0.63 -8.85 2.93 -172.29 -0.51 -9.35 16 4 C 0.11 1.08 7.35 -3.02 -0.02 1.06 16 5 C -0.14 -1.58 6.89 -24.99 -0.17 -1.75 16 6 C 0.12 2.26 3.25 -67.94 -0.22 2.04 16 7 H 0.12 2.24 7.61 -51.93 -0.40 1.85 16 8 N -0.74 -16.04 5.14 -55.22 -0.28 -16.32 16 9 C 0.56 15.44 7.57 -12.98 -0.10 15.35 16 10 O -0.61 -18.40 11.75 5.20 0.06 -18.34 16 11 C -0.60 -17.47 9.96 -35.64 -0.36 -17.82 16 12 H 0.07 1.99 8.05 -52.49 -0.42 1.57 16 13 C 0.06 1.89 5.52 -17.37 -0.10 1.79 16 14 N -0.83 -24.89 13.64 55.55 0.76 -24.14 16 15 Si 1.13 31.60 25.99 -169.99 -4.42 27.18 16 16 H -0.32 -8.63 7.11 56.52 0.40 -8.23 16 17 H -0.28 -8.00 6.78 56.52 0.38 -7.61 16 18 H -0.29 -8.37 7.11 56.52 0.40 -7.96 16 19 C 0.50 9.78 7.66 -10.86 -0.08 9.69 16 20 O -0.50 -12.54 17.59 5.56 0.10 -12.45 16 21 H 0.05 0.52 8.14 -51.94 -0.42 0.10 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.06 7.93 -51.93 -0.41 0.64 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 30 H 0.39 7.43 8.38 -40.82 -0.34 7.09 16 31 H 0.28 7.88 8.72 -40.82 -0.36 7.52 16 LS Contribution 268.62 15.07 4.05 4.05 Total: -1.00 -37.06 268.62 -5.04 -42.10 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.11 Total: -3.09 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.69 Total: 10.36 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.03 Total: -49.81 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: 0.16 Total: -30.79 kcal Atomic # 14 Polarization: 31.60 SS G_CDS: -4.42 Total: 27.18 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -37.06 -5.04 -42.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619825516.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.331 kcal (2) G-P(sol) polarization free energy of solvation -37.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds