Wall clock time and date at job start Mon Mar 30 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47113 * 2 1 4 4 C 1.46758 * 124.35032 * 269.95398 * 3 2 1 5 5 C 1.54681 * 105.53534 * 196.94274 * 4 3 2 6 6 C 1.54626 * 101.66980 * 334.73891 * 5 4 3 7 7 H 1.09001 * 110.49221 * 265.90593 * 6 5 4 8 8 N 1.46503 * 110.48529 * 143.39454 * 6 5 4 9 9 C 1.34786 * 119.99926 * 156.84529 * 8 6 5 10 10 O 1.21686 * 119.99696 * 359.97438 * 9 8 6 11 11 C 1.46373 * 119.99966 * 179.97438 * 9 8 6 12 12 H 1.08002 * 119.99728 * 6.24178 * 11 9 8 13 13 C 1.40042 * 119.99893 * 186.24264 * 11 9 8 14 14 N 1.30671 * 119.99961 * 184.67122 * 13 11 9 15 15 Si 1.86802 * 120.00099 * 4.67753 * 13 11 9 16 16 H 1.48505 * 109.47216 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.46975 * 299.99476 * 15 13 11 18 18 H 1.48499 * 109.47526 * 59.99639 * 15 13 11 19 19 C 1.34424 * 124.34797 * 89.97382 * 3 2 1 20 20 O 1.21275 * 124.94391 * 359.54313 * 19 3 2 21 21 H 1.08989 * 109.47263 * 60.00047 * 1 2 3 22 22 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47017 * 299.99353 * 1 2 3 24 24 H 1.08998 * 109.47535 * 240.00100 * 2 1 3 25 25 H 1.09003 * 109.47481 * 119.99950 * 2 1 3 26 26 H 1.08999 * 110.24644 * 316.03861 * 4 3 2 27 27 H 1.09006 * 110.24809 * 78.03175 * 4 3 2 28 28 H 1.09001 * 111.09042 * 216.62545 * 5 4 3 29 29 H 1.09000 * 110.94996 * 92.79656 * 5 4 3 30 30 H 0.96996 * 120.00087 * 336.84039 * 8 6 5 31 31 H 0.96993 * 120.00036 * 354.90301 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2953 2.1617 -1.2116 5 6 3.1746 3.3471 -0.7489 6 6 2.7696 3.4754 0.7378 7 1 1.9754 4.2128 0.8547 8 7 3.9294 3.8389 1.5557 9 6 3.7511 4.4463 2.7457 10 8 2.6268 4.6931 3.1404 11 6 4.9099 4.8090 3.5631 12 1 5.9082 4.6828 3.1708 13 6 4.7241 5.3197 4.8537 14 7 5.7522 5.7288 5.5488 15 14 3.0064 5.4160 5.5818 16 1 3.0801 5.9889 6.9499 17 1 2.1545 6.2818 4.7274 18 1 2.4193 4.0536 5.6471 19 6 2.2707 2.0965 1.1098 20 8 2.1198 1.6950 2.2442 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8335 1.5525 -1.9378 27 1 1.3649 2.5307 -1.6436 28 1 2.9299 4.2554 -1.2996 29 1 4.2336 3.1077 -0.8454 30 1 4.8256 3.6424 1.2409 31 1 6.6501 5.6109 5.2017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619825516.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:23 Heat of formation + Delta-G solvation = -116.446941 kcal Electronic energy + Delta-G solvation = -15894.553062 eV Core-core repulsion = 13173.986810 eV Total energy + Delta-G solvation = -2720.566252 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.63907 -39.57836 -37.53066 -35.85394 -35.07473 -33.38297 -30.15579 -28.85285 -27.22679 -24.50885 -22.82603 -22.05119 -20.31102 -20.18278 -18.04209 -17.67801 -17.23379 -16.97896 -15.89852 -15.65546 -15.41086 -14.85667 -14.67247 -14.50770 -14.43570 -14.19632 -13.83440 -13.21634 -12.83531 -12.80048 -12.64462 -12.40999 -12.16094 -11.89453 -11.40523 -11.29568 -11.18049 -10.14375 -9.72541 -9.69667 -9.23483 -7.16609 1.38529 1.46918 1.51704 1.90796 1.97903 2.21559 2.39435 2.87996 3.21533 3.54188 3.57215 3.99827 4.08403 4.13657 4.25887 4.47238 4.54856 4.68692 4.80934 4.92831 4.98600 5.07905 5.24632 5.39996 5.49061 5.66258 5.81916 5.92144 6.10224 6.60048 7.07475 7.19504 7.97131 8.09289 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.042585 B = 0.007763 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.355920 B = 3606.078675 C = 3951.608077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.618 5.618 4 C 0.106 3.894 5 C -0.121 4.121 6 C 0.111 3.889 7 H 0.095 0.905 8 N -0.725 5.725 9 C 0.552 3.448 10 O -0.637 6.637 11 C -0.615 4.615 12 H 0.072 0.928 13 C 0.032 3.968 14 N -0.846 5.846 15 Si 1.158 2.842 16 H -0.302 1.302 17 H -0.291 1.291 18 H -0.311 1.311 19 C 0.486 3.514 20 O -0.576 6.576 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.021 0.979 24 H 0.121 0.879 25 H 0.052 0.948 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.404 0.596 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -9.143 -19.658 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.353 5.353 4 C -0.015 4.015 5 C -0.159 4.159 6 C 0.001 3.999 7 H 0.113 0.887 8 N -0.376 5.376 9 C 0.358 3.642 10 O -0.531 6.531 11 C -0.652 4.652 12 H 0.090 0.910 13 C -0.182 4.182 14 N -0.474 5.474 15 Si 0.990 3.010 16 H -0.232 1.232 17 H -0.219 1.219 18 H -0.239 1.239 19 C 0.273 3.727 20 O -0.454 6.454 21 H 0.094 0.906 22 H 0.106 0.894 23 H 0.041 0.959 24 H 0.139 0.861 25 H 0.071 0.929 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.119 0.881 30 H 0.240 0.760 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.040 -8.765 -17.567 20.857 hybrid contribution 1.518 -0.655 -0.947 1.906 sum -5.522 -9.421 -18.515 21.495 Atomic orbital electron populations 1.22115 0.95259 1.03259 1.01506 1.21538 0.94904 0.80438 1.03645 1.48518 1.65228 1.14240 1.07327 1.22427 1.00738 0.92130 0.86234 1.23008 1.02078 1.00937 0.89838 1.21586 0.91497 0.93017 0.93753 0.88749 1.45311 1.08027 1.63672 1.20592 1.18409 0.88929 0.76038 0.80849 1.90126 1.27897 1.63184 1.71882 1.22213 0.93546 1.47431 1.01962 0.90989 1.27634 1.08069 0.88593 0.93952 1.70649 1.00765 1.35402 1.40629 0.82000 0.70003 0.76714 0.72263 1.23193 1.21876 1.23946 1.22048 0.76735 0.89361 0.84596 1.90685 1.54409 1.76202 1.24127 0.90593 0.89440 0.95927 0.86141 0.92941 0.86356 0.88720 0.85879 0.88081 0.76046 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.37 16 2 C 0.12 2.39 6.65 86.38 0.57 2.97 16 3 N -0.62 -15.68 2.93 -817.58 -2.40 -18.07 16 4 C 0.11 1.54 7.35 86.90 0.64 2.17 16 5 C -0.12 -2.23 6.89 31.72 0.22 -2.01 16 6 C 0.11 3.91 3.25 44.98 0.15 4.06 16 7 H 0.09 3.71 7.61 -2.39 -0.02 3.69 16 8 N -0.72 -31.29 5.14 -446.85 -2.30 -33.58 16 9 C 0.55 31.10 7.57 86.36 0.65 31.76 16 10 O -0.64 -39.60 11.75 -4.30 -0.05 -39.65 16 11 C -0.61 -36.49 9.96 24.83 0.25 -36.25 16 12 H 0.07 4.13 8.05 -2.91 -0.02 4.11 16 13 C 0.03 1.97 5.52 85.30 0.47 2.44 16 14 N -0.85 -50.63 13.64 21.83 0.30 -50.34 16 15 Si 1.16 65.63 25.99 68.60 1.78 67.41 16 16 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 17 H -0.29 -16.80 6.78 99.48 0.67 -16.13 16 18 H -0.31 -18.69 7.11 99.48 0.71 -17.98 16 19 C 0.49 18.92 7.66 87.90 0.67 19.60 16 20 O -0.58 -30.06 17.59 -3.02 -0.05 -30.11 16 21 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.38 7.93 -2.39 -0.02 1.36 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 1.61 7.81 -2.39 -0.02 1.59 16 30 H 0.40 14.92 8.38 -92.71 -0.78 14.14 16 31 H 0.28 15.99 8.72 -92.71 -0.81 15.18 16 Total: -1.00 -85.23 268.62 1.93 -83.30 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: 0.29 Total: -1.32 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 4.36 Total: 22.37 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -4.40 Total: -101.99 kcal Atomic # 8 Polarization: -69.66 SS G_CDS: -0.10 Total: -69.76 kcal Atomic # 14 Polarization: 65.63 SS G_CDS: 1.78 Total: 67.41 kcal Total: -85.23 1.93 -83.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619825516.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.149 kcal (2) G-P(sol) polarization free energy of solvation -85.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds