Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 6 6 N 1.28780 * 125.44820 * 0.02770 * 5 2 1 7 7 N 1.29004 * 108.72347 * 179.97438 * 6 5 2 8 8 C 1.33316 * 107.35332 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.55020 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47494 * 194.96982 * 9 8 7 11 11 O 1.42906 * 109.46769 * 314.96978 * 9 8 7 12 12 C 1.50700 * 109.47410 * 74.96581 * 9 8 7 13 13 H 1.08003 * 119.99805 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99956 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99953 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99712 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47293 * 60.00063 * 16 14 12 18 18 H 1.48502 * 109.47004 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47323 * 299.99991 * 16 14 12 20 20 N 1.28883 * 125.44598 * 179.71914 * 5 2 1 21 21 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 22 22 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 23 23 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 26 26 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 27 27 H 1.08996 * 109.46952 * 299.99863 * 4 2 1 28 28 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 29 29 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 30 30 H 0.96696 * 113.99690 * 60.00048 * 11 9 8 31 31 H 0.97006 * 119.99287 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1963 6 7 1.2782 -1.2178 2.1087 7 7 2.0400 -1.7386 3.0102 8 6 3.3017 -1.5226 2.6377 9 6 4.5421 -1.9510 3.3787 10 1 5.4049 -1.4151 2.9833 11 8 4.3929 -1.6540 4.7686 12 6 4.7467 -3.4334 3.2010 13 1 4.0486 -4.0079 2.6101 14 6 5.8251 -4.0563 3.7927 15 7 6.6748 -3.3569 4.5125 16 14 6.0790 -5.8938 3.5717 17 1 6.2348 -6.2018 2.1274 18 1 7.3005 -6.3161 4.3030 19 1 4.9033 -6.6242 4.1096 20 7 3.2574 -0.8723 1.5009 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 3.6428 -2.0979 5.1873 31 1 7.4337 -3.7952 4.9285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697197553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = 67.465753 kcal Electronic energy + Delta-G solvation = -15865.472283 eV Core-core repulsion = 13185.173835 eV Total energy + Delta-G solvation = -2680.298448 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.117 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.54267 -37.49016 -35.64111 -32.68019 -32.19087 -31.55555 -27.86165 -27.64002 -27.09775 -24.00606 -23.70278 -20.91848 -20.02582 -17.18703 -16.82263 -16.34569 -15.20093 -14.61148 -14.25020 -14.16275 -13.58417 -13.16714 -13.01834 -12.59334 -12.54249 -12.37116 -11.96209 -11.72481 -11.54608 -11.31494 -11.07243 -10.96007 -10.89201 -10.28679 -10.16319 -10.10839 -9.64095 -9.21663 -8.61191 -8.42100 -6.07470 -4.25710 1.95509 2.40443 3.12825 3.30491 3.34504 3.39009 4.23005 4.37804 4.48978 4.58165 5.03640 5.18219 5.27662 5.29426 5.38536 5.43314 5.48439 5.55046 5.59768 5.82956 5.98932 6.04131 6.26945 6.56886 6.67472 6.94931 7.49607 7.77489 7.98917 8.73721 9.17900 9.28891 9.48477 10.97090 Molecular weight = 226.12amu Principal moments of inertia in cm(-1) A = 0.041914 B = 0.007131 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.871607 B = 3925.809866 C = 4119.269126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.182 3.818 3 C -0.156 4.156 4 C -0.157 4.157 5 N -0.148 5.148 6 N -0.086 5.086 7 N -0.286 5.286 8 C 0.180 3.820 9 C 0.320 3.680 10 H 0.086 0.914 11 O -0.552 6.552 12 C -0.561 4.561 13 H 0.057 0.943 14 C 0.083 3.917 15 N -0.857 5.857 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.319 5.319 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.358 0.642 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 7.142 -10.597 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.100 3.900 3 C -0.215 4.215 4 C -0.216 4.216 5 N -0.061 5.061 6 N -0.079 5.079 7 N -0.158 5.158 8 C -0.103 4.103 9 C 0.259 3.741 10 H 0.103 0.897 11 O -0.353 6.353 12 C -0.600 4.600 13 H 0.075 0.925 14 C -0.124 4.124 15 N -0.492 5.492 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.169 5.169 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.203 0.797 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.422 7.612 -10.722 16.177 hybrid contribution 0.148 -1.448 -0.037 1.456 sum -9.275 6.165 -10.759 15.485 Atomic orbital electron populations 1.22033 0.90784 1.04289 1.03639 1.21115 0.95895 0.92566 0.80422 1.22192 1.03418 0.92535 1.03339 1.22198 1.03498 1.00900 0.94971 1.50337 1.01863 1.35987 1.17946 1.78757 1.22817 1.09956 0.96356 1.75720 1.01732 1.18600 1.19750 1.27895 0.97337 0.94278 0.90763 1.17922 0.83427 0.95126 0.77650 0.89677 1.86573 1.52811 1.72664 1.23286 1.21304 1.11448 0.92252 1.34979 0.92487 1.24979 0.94983 0.98521 0.93955 1.70055 1.13024 1.35853 1.30307 0.86570 0.77731 0.84787 0.78371 1.20116 1.20957 1.19912 1.74623 1.02222 1.21802 1.18300 0.90845 0.89891 0.90825 0.90408 0.89808 0.91653 0.91599 0.89833 0.90340 0.79684 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.91 37.16 0.29 -1.19 16 2 C 0.18 2.28 1.30 -131.81 -0.17 2.11 16 3 C -0.16 -1.65 8.67 37.16 0.32 -1.33 16 4 C -0.16 -1.72 8.66 37.16 0.32 -1.40 16 5 N -0.15 -2.72 3.73 0.48 0.00 -2.71 16 6 N -0.09 -1.76 12.24 60.35 0.74 -1.02 16 7 N -0.29 -6.73 12.45 32.44 0.40 -6.33 16 8 C 0.18 4.38 7.16 -156.63 -1.12 3.26 16 9 C 0.32 8.59 3.38 -29.04 -0.10 8.49 16 10 H 0.09 2.41 8.14 -51.93 -0.42 1.99 16 11 O -0.55 -14.86 12.72 -35.23 -0.45 -15.31 16 12 C -0.56 -15.88 8.75 -34.44 -0.30 -16.18 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 14 C 0.08 2.32 5.40 -17.82 -0.10 2.22 16 15 N -0.86 -25.06 12.84 55.43 0.71 -24.35 16 16 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 N -0.32 -6.92 11.83 32.46 0.38 -6.54 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.36 8.84 8.99 45.56 0.41 9.25 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 274.33 15.07 4.13 4.13 Total: -1.00 -32.52 274.33 -3.30 -35.83 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.36 Total: 3.92 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.85 Total: -4.01 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 2.24 Total: -40.94 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.45 Total: -15.31 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.52 -3.30 -35.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697197553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.294 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds