Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 6 6 N 1.28780 * 125.44820 * 0.02770 * 5 2 1 7 7 N 1.29004 * 108.72347 * 179.97438 * 6 5 2 8 8 C 1.33316 * 107.35332 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.55020 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47494 * 194.96982 * 9 8 7 11 11 O 1.42906 * 109.46769 * 314.96978 * 9 8 7 12 12 C 1.50700 * 109.47410 * 74.96581 * 9 8 7 13 13 H 1.08003 * 119.99805 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99956 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99953 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99712 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47293 * 60.00063 * 16 14 12 18 18 H 1.48502 * 109.47004 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47323 * 299.99991 * 16 14 12 20 20 N 1.28883 * 125.44598 * 179.71914 * 5 2 1 21 21 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 22 22 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 23 23 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 26 26 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 27 27 H 1.08996 * 109.46952 * 299.99863 * 4 2 1 28 28 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 29 29 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 30 30 H 0.96696 * 113.99690 * 60.00048 * 11 9 8 31 31 H 0.97006 * 119.99287 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1963 6 7 1.2782 -1.2178 2.1087 7 7 2.0400 -1.7386 3.0102 8 6 3.3017 -1.5226 2.6377 9 6 4.5421 -1.9510 3.3787 10 1 5.4049 -1.4151 2.9833 11 8 4.3929 -1.6540 4.7686 12 6 4.7467 -3.4334 3.2010 13 1 4.0486 -4.0079 2.6101 14 6 5.8251 -4.0563 3.7927 15 7 6.6748 -3.3569 4.5125 16 14 6.0790 -5.8938 3.5717 17 1 6.2348 -6.2018 2.1274 18 1 7.3005 -6.3161 4.3030 19 1 4.9033 -6.6242 4.1096 20 7 3.2574 -0.8723 1.5009 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 1.6767 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 3.6428 -2.0979 5.1873 31 1 7.4337 -3.7952 4.9285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697197553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = 42.019263 kcal Electronic energy + Delta-G solvation = -15866.575726 eV Core-core repulsion = 13185.173835 eV Total energy + Delta-G solvation = -2681.401891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.117 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.20955 -38.71319 -37.60842 -34.40823 -34.29207 -33.18994 -29.51401 -28.49366 -28.37519 -25.80557 -25.40096 -22.78013 -21.37731 -19.28790 -18.10352 -17.95983 -17.01187 -16.74223 -15.54169 -15.23776 -15.17434 -14.98334 -14.60209 -13.81912 -13.62302 -13.42213 -13.19949 -13.11045 -12.95944 -12.83410 -12.80331 -12.49526 -12.15409 -12.12320 -11.82663 -11.79079 -11.65046 -11.05424 -10.72907 -10.50144 -8.21928 -6.49056 0.33283 1.10670 1.26703 1.41499 1.43989 1.52556 2.37424 2.99642 3.09154 3.38256 3.56729 3.66880 3.82198 4.15856 4.49145 4.52488 4.54815 4.62237 4.70788 4.74129 4.74453 4.92069 5.03438 5.13635 5.26965 5.36266 5.49418 5.57358 5.84705 6.55122 7.15274 7.31360 7.51282 8.83327 Molecular weight = 226.12amu Principal moments of inertia in cm(-1) A = 0.041914 B = 0.007131 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.871607 B = 3925.809866 C = 4119.269126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.157 3.843 3 C -0.152 4.152 4 C -0.154 4.154 5 N -0.124 5.124 6 N -0.082 5.082 7 N -0.313 5.313 8 C 0.159 3.841 9 C 0.325 3.675 10 H 0.060 0.940 11 O -0.563 6.563 12 C -0.578 4.578 13 H 0.048 0.952 14 C 0.036 3.964 15 N -0.890 5.890 16 Si 0.968 3.032 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.270 1.270 20 N -0.321 5.321 21 H 0.065 0.935 22 H 0.129 0.871 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.131 0.869 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.365 0.635 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.672 7.286 -12.520 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.078 3.922 3 C -0.211 4.211 4 C -0.212 4.212 5 N -0.041 5.041 6 N -0.075 5.075 7 N -0.183 5.183 8 C -0.124 4.124 9 C 0.264 3.736 10 H 0.078 0.922 11 O -0.366 6.366 12 C -0.616 4.616 13 H 0.066 0.934 14 C -0.168 4.168 15 N -0.526 5.526 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.195 1.195 20 N -0.173 5.173 21 H 0.084 0.916 22 H 0.148 0.852 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.078 0.922 30 H 0.211 0.789 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.635 7.764 -12.650 18.259 hybrid contribution 0.433 -1.354 0.430 1.485 sum -10.203 6.409 -12.220 17.161 Atomic orbital electron populations 1.22114 0.88320 1.04267 1.05589 1.22051 0.97906 0.93433 0.78759 1.22246 1.02302 0.91198 1.05309 1.22253 1.02302 1.00774 0.95860 1.51051 1.00646 1.33969 1.18408 1.78647 1.22399 1.09986 0.96432 1.75653 1.01469 1.19971 1.21205 1.27288 0.97032 0.96227 0.91891 1.17522 0.84012 0.94404 0.77712 0.92190 1.86510 1.53427 1.72882 1.23737 1.21472 1.11737 0.93074 1.35320 0.93394 1.25817 0.94364 1.03308 0.93293 1.70162 1.13529 1.37920 1.30972 0.85493 0.77983 0.78780 0.78628 1.19418 1.19804 1.19464 1.74543 1.03973 1.21430 1.17384 0.91591 0.85231 0.91829 0.92201 0.85060 0.92439 0.92742 0.85006 0.92245 0.78881 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 7.91 71.98 0.57 -1.84 16 2 C 0.16 3.57 1.30 3.60 0.00 3.57 16 3 C -0.15 -2.78 8.67 71.98 0.62 -2.16 16 4 C -0.15 -2.94 8.66 71.98 0.62 -2.32 16 5 N -0.12 -4.49 3.73 -152.38 -0.57 -5.06 16 6 N -0.08 -3.35 12.24 37.02 0.45 -2.90 16 7 N -0.31 -14.93 12.45 -51.26 -0.64 -15.57 16 8 C 0.16 7.91 7.16 138.55 0.99 8.91 16 9 C 0.32 18.06 3.38 29.10 0.10 18.16 16 10 H 0.06 3.58 8.14 -2.39 -0.02 3.56 16 11 O -0.56 -31.35 12.72 -148.98 -1.89 -33.24 16 12 C -0.58 -33.43 8.75 25.60 0.22 -33.21 16 13 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 14 C 0.04 2.06 5.40 84.66 0.46 2.51 16 15 N -0.89 -52.74 12.84 21.45 0.28 -52.46 16 16 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 N -0.32 -14.12 11.83 -51.20 -0.61 -14.72 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.37 18.68 8.99 -74.06 -0.67 18.02 16 31 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -71.87 274.33 3.11 -68.76 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.47 Total: 15.55 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 3.59 Total: -6.36 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.08 Total: -90.71 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.89 Total: -33.24 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.87 3.11 -68.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697197553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.778 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds