Wall clock time and date at job start Mon Mar 30 2020 03:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 120.00198 * 2 1 4 4 N 1.34776 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.47025 * 125.64288 * 359.96739 * 4 2 1 6 6 C 1.54330 * 107.26725 * 178.97171 * 5 4 2 7 7 C 1.55160 * 102.94439 * 337.80370 * 6 5 4 8 8 C 1.47420 * 125.65347 * 180.02562 * 4 2 1 9 9 H 1.08996 * 110.46197 * 85.20979 * 8 4 2 10 10 C 1.50700 * 110.36509 * 322.93526 * 8 4 2 11 11 O 1.21293 * 120.00282 * 344.58776 * 10 8 4 12 12 N 1.34777 * 120.00075 * 164.58673 * 10 8 4 13 13 C 1.37104 * 120.00173 * 180.02562 * 12 10 8 14 14 H 1.08002 * 119.99666 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00001 * 180.27893 * 13 12 10 16 16 N 1.31407 * 120.00135 * 179.72366 * 15 13 12 17 17 Si 1.86800 * 120.00194 * 359.72088 * 15 13 12 18 18 H 1.48500 * 109.47210 * 89.99937 * 17 15 13 19 19 H 1.48496 * 109.47530 * 210.00374 * 17 15 13 20 20 H 1.48501 * 109.47312 * 330.00618 * 17 15 13 21 21 H 1.08996 * 109.47712 * 240.00250 * 1 2 3 22 22 H 1.09004 * 109.47440 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46630 * 120.00083 * 1 2 3 24 24 H 1.08996 * 109.88579 * 59.55857 * 5 4 2 25 25 H 1.09002 * 110.00963 * 298.45598 * 5 4 2 26 26 H 1.08997 * 110.71888 * 219.43984 * 6 5 4 27 27 H 1.08996 * 110.71977 * 96.17300 * 6 5 4 28 28 H 1.08998 * 111.00426 * 277.43369 * 7 6 5 29 29 H 1.08997 * 111.00021 * 153.57597 * 7 6 5 30 30 H 0.97000 * 120.00140 * 0.02562 * 12 10 8 31 31 H 0.97004 * 120.00486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0018 6 6 2.7281 -3.5316 -0.0245 7 6 3.9081 -2.7119 -0.6102 8 6 3.6479 -1.3123 0.0011 9 1 4.0351 -1.2647 1.0189 10 6 4.2812 -0.2422 -0.8504 11 8 3.6026 0.3942 -1.6287 12 7 5.6015 0.0077 -0.7472 13 6 6.1775 0.9815 -1.5215 14 1 5.5732 1.5481 -2.2144 15 6 7.5398 1.2351 -1.4192 16 7 8.0929 2.1648 -2.1653 17 14 8.5851 0.2546 -0.2212 18 1 9.1138 -0.9552 -0.9008 19 1 9.7172 1.0928 0.2490 20 1 7.7553 -0.1534 0.9408 21 1 -0.3634 -0.5138 0.8899 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3633 -0.5139 -0.8900 24 1 0.9482 -2.6308 -0.8815 25 1 0.9767 -2.6445 0.9027 26 1 2.4825 -4.3719 -0.6737 27 1 2.9606 -3.8764 0.9830 28 1 3.8584 -2.6785 -1.6986 29 1 4.8654 -3.1121 -0.2764 30 1 6.1443 -0.5015 -0.1251 31 1 9.0439 2.3422 -2.0936 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709014726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:27 Heat of formation + Delta-G solvation = -60.880255 kcal Electronic energy + Delta-G solvation = -16112.962831 eV Core-core repulsion = 13394.806131 eV Total energy + Delta-G solvation = -2718.156700 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.01226 -37.66178 -36.70757 -33.81790 -31.85535 -31.42894 -29.75955 -28.56667 -24.99647 -23.19020 -21.38594 -20.01988 -18.90417 -17.78356 -16.75594 -16.47962 -15.04944 -14.96942 -14.56186 -14.21547 -13.75289 -13.36287 -13.07390 -12.90777 -12.55314 -12.33633 -12.26241 -11.91673 -11.59439 -11.45508 -11.30742 -11.07272 -10.75477 -10.51667 -9.87440 -9.51368 -9.18826 -8.66363 -8.07960 -7.97611 -6.20049 -3.70173 3.09354 3.11664 3.14705 3.20943 3.30523 3.86714 4.19038 4.49648 4.62876 4.78858 4.91878 5.13679 5.28747 5.36444 5.41016 5.48238 5.52336 5.63449 5.71249 5.89903 5.92106 5.96646 6.04453 6.25749 6.58689 7.67740 7.92158 8.26394 8.67121 8.78217 9.08129 9.53967 9.96839 10.93703 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.008697 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.077285 B = 3218.851433 C = 3747.355479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.519 3.481 3 O -0.500 6.500 4 N -0.610 5.610 5 C 0.105 3.895 6 C -0.130 4.130 7 C -0.123 4.123 8 C 0.121 3.879 9 H 0.081 0.919 10 C 0.456 3.544 11 O -0.545 6.545 12 N -0.592 5.592 13 C -0.296 4.296 14 H 0.118 0.882 15 C 0.039 3.961 16 N -0.886 5.886 17 Si 0.878 3.122 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.368 0.632 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 -14.284 7.417 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.307 3.693 3 O -0.373 6.373 4 N -0.348 5.348 5 C -0.018 4.018 6 C -0.168 4.168 7 C -0.161 4.161 8 C 0.013 3.987 9 H 0.099 0.901 10 C 0.240 3.760 11 O -0.424 6.424 12 N -0.233 5.233 13 C -0.425 4.425 14 H 0.136 0.864 15 C -0.163 4.163 16 N -0.527 5.527 17 Si 0.705 3.295 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.196 1.196 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.201 0.799 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.940 -13.017 6.809 18.317 hybrid contribution 0.993 -0.759 0.923 1.554 sum -9.947 -13.776 7.732 18.669 Atomic orbital electron populations 1.21845 0.92204 1.04880 1.03310 1.20290 0.89807 0.82448 0.76721 1.90841 1.69975 1.30192 1.46259 1.48215 1.05494 1.05556 1.75520 1.21937 0.96213 0.82370 1.01273 1.22631 0.94801 0.97470 1.01921 1.22766 0.98836 0.92712 1.01834 1.21730 0.82150 0.95512 0.99310 0.90097 1.19559 0.82725 0.86643 0.87075 1.90587 1.61331 1.50801 1.39705 1.42101 1.07307 1.35300 1.38545 1.19414 0.92693 1.12130 1.18256 0.86446 1.25007 0.96499 0.97122 0.97708 1.69623 1.12239 1.31408 1.39411 0.86687 0.81011 0.80538 0.81266 1.19690 1.20244 1.19550 0.90207 0.89334 0.89966 0.91642 0.91614 0.89923 0.90498 0.89842 0.89515 0.79936 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.51 36.00 0.34 -1.69 16 2 C 0.52 9.79 7.21 -10.99 -0.08 9.71 16 3 O -0.50 -12.57 14.47 -18.51 -0.27 -12.84 16 4 N -0.61 -10.11 3.14 -164.34 -0.52 -10.63 16 5 C 0.11 1.14 6.49 -3.06 -0.02 1.12 16 6 C -0.13 -1.23 6.95 -24.89 -0.17 -1.40 16 7 C -0.12 -1.65 6.49 -24.57 -0.16 -1.81 16 8 C 0.12 2.17 3.56 -67.56 -0.24 1.93 16 9 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 10 C 0.46 11.27 6.21 -10.98 -0.07 11.20 16 11 O -0.54 -15.98 13.35 -18.52 -0.25 -16.22 16 12 N -0.59 -15.13 5.09 -10.96 -0.06 -15.19 16 13 C -0.30 -8.89 10.16 -14.93 -0.15 -9.04 16 14 H 0.12 4.05 7.39 -52.49 -0.39 3.67 16 15 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 16 N -0.89 -27.01 13.96 55.50 0.77 -26.24 16 17 Si 0.88 20.18 27.73 -169.99 -4.71 15.46 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -5.71 6.52 56.52 0.37 -5.34 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.37 8.22 5.77 -40.82 -0.24 7.98 16 31 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 263.31 15.07 3.97 3.97 Total: -1.00 -38.40 263.31 -5.72 -44.11 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.01 Total: 6.54 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -0.65 Total: 11.03 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.20 Total: -52.05 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.51 Total: -29.06 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.71 Total: 15.46 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -38.40 -5.72 -44.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709014726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.766 kcal (2) G-P(sol) polarization free energy of solvation -38.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds