Wall clock time and date at job start Mon Mar 30 2020 03:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21285 * 120.00198 * 2 1 4 4 N 1.34776 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.47025 * 125.64288 * 359.96739 * 4 2 1 6 6 C 1.54330 * 107.26725 * 178.97171 * 5 4 2 7 7 C 1.55160 * 102.94439 * 337.80370 * 6 5 4 8 8 C 1.47420 * 125.65347 * 180.02562 * 4 2 1 9 9 H 1.08996 * 110.46197 * 85.20979 * 8 4 2 10 10 C 1.50700 * 110.36509 * 322.93526 * 8 4 2 11 11 O 1.21293 * 120.00282 * 344.58776 * 10 8 4 12 12 N 1.34777 * 120.00075 * 164.58673 * 10 8 4 13 13 C 1.37104 * 120.00173 * 180.02562 * 12 10 8 14 14 H 1.08002 * 119.99666 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00001 * 180.27893 * 13 12 10 16 16 N 1.31407 * 120.00135 * 179.72366 * 15 13 12 17 17 Si 1.86800 * 120.00194 * 359.72088 * 15 13 12 18 18 H 1.48500 * 109.47210 * 89.99937 * 17 15 13 19 19 H 1.48496 * 109.47530 * 210.00374 * 17 15 13 20 20 H 1.48501 * 109.47312 * 330.00618 * 17 15 13 21 21 H 1.08996 * 109.47712 * 240.00250 * 1 2 3 22 22 H 1.09004 * 109.47440 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46630 * 120.00083 * 1 2 3 24 24 H 1.08996 * 109.88579 * 59.55857 * 5 4 2 25 25 H 1.09002 * 110.00963 * 298.45598 * 5 4 2 26 26 H 1.08997 * 110.71888 * 219.43984 * 6 5 4 27 27 H 1.08996 * 110.71977 * 96.17300 * 6 5 4 28 28 H 1.08998 * 111.00426 * 277.43369 * 7 6 5 29 29 H 1.08997 * 111.00021 * 153.57597 * 7 6 5 30 30 H 0.97000 * 120.00140 * 0.02562 * 12 10 8 31 31 H 0.97004 * 120.00486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0018 6 6 2.7281 -3.5316 -0.0245 7 6 3.9081 -2.7119 -0.6102 8 6 3.6479 -1.3123 0.0011 9 1 4.0351 -1.2647 1.0189 10 6 4.2812 -0.2422 -0.8504 11 8 3.6026 0.3942 -1.6287 12 7 5.6015 0.0077 -0.7472 13 6 6.1775 0.9815 -1.5215 14 1 5.5732 1.5481 -2.2144 15 6 7.5398 1.2351 -1.4192 16 7 8.0929 2.1648 -2.1653 17 14 8.5851 0.2546 -0.2212 18 1 9.1138 -0.9552 -0.9008 19 1 9.7172 1.0928 0.2490 20 1 7.7553 -0.1534 0.9408 21 1 -0.3634 -0.5138 0.8899 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3633 -0.5139 -0.8900 24 1 0.9482 -2.6308 -0.8815 25 1 0.9767 -2.6445 0.9027 26 1 2.4825 -4.3719 -0.6737 27 1 2.9606 -3.8764 0.9830 28 1 3.8584 -2.6785 -1.6986 29 1 4.8654 -3.1121 -0.2764 30 1 6.1443 -0.5015 -0.1251 31 1 9.0439 2.3422 -2.0936 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709014726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:26 Heat of formation + Delta-G solvation = -91.594360 kcal Electronic energy + Delta-G solvation = -16114.294694 eV Core-core repulsion = 13394.806131 eV Total energy + Delta-G solvation = -2719.488563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45846 -39.48249 -38.08376 -35.98206 -33.80834 -32.91796 -30.92565 -29.72279 -26.94268 -24.52424 -22.52359 -21.57313 -20.89096 -19.45569 -18.32366 -17.80857 -16.89608 -16.42115 -16.12148 -15.60260 -15.28719 -15.10089 -14.54073 -14.30471 -14.16788 -13.87220 -13.30450 -13.24120 -13.04514 -12.84609 -12.60671 -12.43762 -12.14197 -11.99424 -11.64402 -11.50861 -10.76878 -10.43019 -10.23690 -9.51151 -8.42883 -6.03640 1.26367 1.33148 1.42174 1.79132 1.91209 2.17692 2.21580 2.90202 3.12426 3.58343 3.69562 3.98304 4.04312 4.24051 4.29685 4.48932 4.55069 4.64815 4.82141 4.93027 4.93842 5.03252 5.15158 5.31200 5.40188 5.55186 5.91772 6.55310 6.67814 6.87071 7.35063 7.41969 7.98695 8.75881 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.008697 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.077285 B = 3218.851433 C = 3747.355479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.500 3.500 3 O -0.585 6.585 4 N -0.613 5.613 5 C 0.094 3.906 6 C -0.113 4.113 7 C -0.121 4.121 8 C 0.118 3.882 9 H 0.102 0.898 10 C 0.448 3.552 11 O -0.601 6.601 12 N -0.593 5.593 13 C -0.326 4.326 14 H 0.044 0.956 15 C -0.019 4.019 16 N -0.939 5.939 17 Si 0.969 3.031 18 H -0.247 1.247 19 H -0.273 1.273 20 H -0.236 1.236 21 H 0.122 0.878 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.388 0.612 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 -18.661 10.208 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.291 3.709 3 O -0.464 6.464 4 N -0.349 5.349 5 C -0.027 4.027 6 C -0.151 4.151 7 C -0.159 4.159 8 C 0.010 3.990 9 H 0.120 0.880 10 C 0.235 3.765 11 O -0.483 6.483 12 N -0.235 5.235 13 C -0.456 4.456 14 H 0.062 0.938 15 C -0.217 4.217 16 N -0.580 5.580 17 Si 0.788 3.212 18 H -0.171 1.171 19 H -0.198 1.198 20 H -0.160 1.160 21 H 0.141 0.859 22 H 0.098 0.902 23 H 0.122 0.878 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.223 0.777 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.367 -17.481 9.607 22.958 hybrid contribution 1.024 0.659 -0.049 1.219 sum -10.342 -16.822 9.558 21.939 Atomic orbital electron populations 1.21830 0.87280 1.05425 1.06259 1.21529 0.92320 0.81948 0.75106 1.90803 1.72023 1.33247 1.50314 1.48507 1.05104 1.07441 1.73856 1.22414 0.97186 0.79363 1.03743 1.22691 0.91591 0.96967 1.03834 1.22828 1.02321 0.90349 1.00415 1.21877 0.83062 0.95147 0.98916 0.87994 1.21013 0.82107 0.86921 0.86483 1.90552 1.62546 1.53065 1.42172 1.41916 1.08100 1.34811 1.38678 1.18935 0.93202 1.14081 1.19336 0.93763 1.26183 0.97418 0.98164 0.99917 1.69819 1.13205 1.33434 1.41503 0.85314 0.78268 0.78916 0.78672 1.17082 1.19782 1.15954 0.85950 0.90196 0.87828 0.90484 0.87839 0.87113 0.87644 0.92226 0.86946 0.77658 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.51 71.23 0.68 -2.74 16 2 C 0.50 18.90 7.21 87.66 0.63 19.53 16 3 O -0.59 -31.16 14.47 19.96 0.29 -30.87 16 4 N -0.61 -19.21 3.14 -792.23 -2.49 -21.70 16 5 C 0.09 1.57 6.49 86.73 0.56 2.14 16 6 C -0.11 -1.48 6.95 31.79 0.22 -1.26 16 7 C -0.12 -2.84 6.49 31.99 0.21 -2.63 16 8 C 0.12 4.06 3.56 44.73 0.16 4.22 16 9 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 10 C 0.45 22.99 6.21 87.66 0.54 23.53 16 11 O -0.60 -37.87 13.35 19.94 0.27 -37.60 16 12 N -0.59 -31.11 5.09 -306.98 -1.56 -32.67 16 13 C -0.33 -20.88 10.16 84.04 0.85 -20.03 16 14 H 0.04 3.39 7.39 -2.91 -0.02 3.37 16 15 C -0.02 -1.13 5.50 84.93 0.47 -0.66 16 16 N -0.94 -59.87 13.96 21.66 0.30 -59.57 16 17 Si 0.97 41.03 27.73 68.60 1.90 42.93 16 18 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.24 -8.62 6.52 99.48 0.65 -7.97 16 21 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 23 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.39 16.81 5.77 -92.71 -0.53 16.27 16 31 H 0.28 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -97.04 263.31 3.58 -93.47 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.54 Total: 23.91 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 4.32 Total: 22.10 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.75 Total: -113.93 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: 0.55 Total: -68.48 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.90 Total: 42.93 kcal Total: -97.04 3.58 -93.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709014726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.875 kcal (2) G-P(sol) polarization free energy of solvation -97.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds