Wall clock time and date at job start Mon Mar 30 2020 03:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47188 * 120.00103 * 8 6 4 11 11 H 1.48497 * 109.47104 * 240.00206 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 N 1.40107 * 119.99521 * 179.72974 * 14 12 2 16 16 C 1.34777 * 119.99521 * 179.97438 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.53002 * 117.49520 * 248.73925 * 18 16 15 20 20 C 1.53001 * 117.49592 * 180.08775 * 18 16 15 21 21 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 22 22 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 25 25 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 26 26 H 0.97001 * 119.99994 * 359.97438 * 15 14 12 27 27 H 1.08990 * 115.55594 * 34.41244 * 18 16 15 28 28 H 1.09004 * 117.50318 * 0.02562 * 19 18 16 29 29 H 1.09002 * 117.49944 * 145.01954 * 19 18 16 30 30 H 1.09008 * 117.49721 * 214.97915 * 20 18 16 31 31 H 1.08997 * 117.49939 * 359.96914 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.1464 -2.2866 3.6041 10 1 3.1464 -0.1869 4.8166 11 1 1.1660 -1.5863 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 7 2.1832 -0.9041 -3.5984 16 6 1.8618 -0.4407 -4.8225 17 8 1.1639 0.5449 -4.9338 18 6 2.3698 -1.1473 -6.0528 19 6 3.4085 -0.4186 -6.9077 20 6 1.9718 -0.5712 -7.4132 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7086 1.1615 3.4843 25 1 1.1537 0.5418 -2.5435 26 1 2.7411 -1.6926 -3.5092 27 1 2.4561 -2.2307 -5.9708 28 1 3.7248 0.5718 -6.5801 29 1 4.1780 -1.0227 -7.3884 30 1 1.7966 -1.2758 -8.2263 31 1 1.3423 0.3185 -7.4183 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854180862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:05 Heat of formation + Delta-G solvation = -23.485917 kcal Electronic energy + Delta-G solvation = -15251.921342 eV Core-core repulsion = 12535.386183 eV Total energy + Delta-G solvation = -2716.535159 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.13554 -38.67409 -36.32595 -34.81872 -33.85258 -31.41498 -29.77226 -25.21164 -24.68362 -22.67175 -22.50374 -20.88445 -19.48100 -17.77733 -17.21296 -16.13663 -15.74289 -15.26949 -14.83308 -14.61854 -14.30950 -13.85750 -13.19904 -12.74330 -12.61660 -11.78114 -11.69498 -11.09178 -10.99551 -10.85903 -10.78026 -10.72280 -10.70019 -10.32187 -10.12145 -9.97589 -9.04814 -8.89359 -8.43012 -7.91655 -6.09284 -4.13544 2.23647 2.39502 3.29672 3.37450 3.45434 3.49294 3.68834 4.20590 4.42034 4.54676 4.66605 4.84659 5.02903 5.24248 5.37647 5.51930 5.73020 5.91524 5.94008 6.56042 6.75343 6.81608 7.07637 7.11000 7.39706 7.70015 7.87837 8.04236 8.22702 8.29011 8.95222 9.05755 9.52243 10.98315 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.066701 B = 0.005265 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.681597 B = 5317.353940 C = 5596.848587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.059 0.941 4 C -0.503 4.503 5 H 0.076 0.924 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.545 6.545 14 N -0.541 5.541 15 N -0.518 5.518 16 C 0.536 3.464 17 O -0.549 6.549 18 C -0.186 4.186 19 C -0.152 4.152 20 C -0.144 4.144 21 H 0.097 0.903 22 H 0.015 0.985 23 H 0.034 0.966 24 H 0.262 0.738 25 H 0.427 0.573 26 H 0.429 0.571 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -2.248 -15.368 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.019 3.981 3 H 0.077 0.923 4 C -0.542 4.542 5 H 0.095 0.905 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.312 3.688 13 O -0.419 6.419 14 N -0.292 5.292 15 N -0.262 5.262 16 C 0.322 3.678 17 O -0.426 6.426 18 C -0.209 4.209 19 C -0.190 4.190 20 C -0.182 4.182 21 H 0.116 0.884 22 H 0.034 0.966 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.269 0.731 26 H 0.270 0.730 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.940 -2.169 -15.179 15.455 hybrid contribution 0.267 -0.504 0.867 1.038 sum 2.207 -2.672 -14.312 14.726 Atomic orbital electron populations 1.21807 0.96060 1.00176 1.01422 1.18913 0.94474 0.97036 0.87677 0.92295 1.21135 1.31411 1.13017 0.88636 0.90539 1.24955 0.95002 0.95054 0.99174 1.69885 1.36778 1.22966 1.23670 0.86342 0.78617 0.79721 0.82249 1.19540 1.20977 1.20972 1.22616 0.78823 0.84833 0.82516 1.90548 1.38371 1.26993 1.86002 1.45840 1.55066 1.31369 0.96938 1.44800 1.52229 1.30578 0.98600 1.19770 0.80809 0.84694 0.82533 1.90702 1.38811 1.26799 1.86299 1.22028 1.07976 1.00298 0.90596 1.22991 0.92710 1.01955 1.01319 1.22983 0.97943 1.03530 0.93735 0.88431 0.96602 0.94707 0.92837 0.73096 0.73021 0.85477 0.88072 0.87607 0.87777 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.87 37.16 0.33 -2.80 16 2 C 0.04 1.02 2.64 -92.92 -0.25 0.78 16 3 H 0.06 1.48 8.14 -51.92 -0.42 1.06 16 4 C -0.50 -13.97 8.37 -34.44 -0.29 -14.26 16 5 H 0.08 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.52 11.77 7.26 -10.98 -0.08 11.69 16 13 O -0.55 -13.58 15.30 5.55 0.08 -13.50 16 14 N -0.54 -10.19 6.16 31.22 0.19 -10.00 16 15 N -0.52 -8.29 6.26 31.22 0.20 -8.09 16 16 C 0.54 7.92 7.73 -10.99 -0.08 7.83 16 17 O -0.55 -9.83 16.10 5.55 0.09 -9.75 16 18 C -0.19 -1.91 6.19 -91.77 -0.57 -2.48 16 19 C -0.15 -1.29 10.24 -26.70 -0.27 -1.57 16 20 C -0.14 -1.28 10.05 -26.70 -0.27 -1.55 16 21 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 22 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.43 7.72 7.43 -182.59 -1.36 6.37 16 26 H 0.43 6.28 8.00 -182.59 -1.46 4.82 16 27 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.11 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 273.29 15.07 4.12 4.12 Total: -1.00 -31.60 273.29 -7.24 -38.83 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.95 Total: 6.88 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.57 Total: -0.82 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 1.01 Total: -42.17 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.60 -7.24 -38.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854180862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.349 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds