Wall clock time and date at job start Mon Mar 30 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.47075 * 136.05566 * 359.63328 * 14 12 2 16 16 C 1.53753 * 87.88663 * 152.96204 * 15 14 12 17 17 C 1.50702 * 114.08728 * 139.78242 * 16 15 14 18 18 N 1.34775 * 120.00234 * 86.55443 * 17 16 15 19 19 O 1.21282 * 119.99598 * 266.55333 * 17 16 15 20 20 C 1.47064 * 136.06258 * 179.97438 * 14 12 2 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.09005 * 113.46071 * 267.69171 * 15 14 12 26 26 H 1.08995 * 113.46902 * 38.12659 * 15 14 12 27 27 H 1.09006 * 114.38917 * 272.67281 * 16 15 14 28 28 H 0.97000 * 119.99741 * 359.97438 * 18 17 16 29 29 H 0.96998 * 119.99927 * 180.02562 * 18 17 16 30 30 H 1.09008 * 113.46675 * 321.86709 * 20 14 12 31 31 H 1.08996 * 113.46884 * 92.30067 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.9104 0.8651 -2.9893 16 6 1.8014 0.8261 -4.2417 17 6 1.0540 1.0271 -5.5348 18 7 0.8261 2.2733 -5.9948 19 8 0.6576 0.0674 -6.1615 20 6 1.9863 -0.6444 -3.8434 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7089 1.1611 3.4845 25 1 -0.1284 0.6007 -3.1873 26 1 1.0092 1.7848 -2.4128 27 1 2.7083 1.4264 -4.1678 28 1 1.1429 3.0408 -5.4933 29 1 0.3447 2.4026 -6.8269 30 1 3.0019 -1.0105 -3.9946 31 1 1.2315 -1.3070 -4.2668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263876087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:37 Heat of formation + Delta-G solvation = -69.933651 kcal Electronic energy + Delta-G solvation = -15596.513387 eV Core-core repulsion = 12877.964103 eV Total energy + Delta-G solvation = -2718.549284 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.82375 -40.06012 -38.36435 -35.79684 -34.59847 -32.80289 -30.58392 -27.35111 -26.88841 -25.63945 -23.48375 -21.04970 -19.96198 -18.49355 -18.37374 -17.90387 -17.55878 -17.09151 -16.15221 -16.13456 -15.56132 -15.13525 -14.53484 -14.26317 -13.97375 -13.70030 -13.46569 -13.10705 -12.97207 -12.69868 -12.60250 -12.23814 -12.01717 -11.77577 -11.13598 -11.05595 -10.62273 -10.61220 -10.33380 -9.69676 -8.16336 -6.26827 1.41520 1.43120 1.51430 1.52763 1.78417 1.91763 2.44490 2.68436 3.13070 3.15166 3.73118 4.02954 4.16391 4.18548 4.48699 4.52102 4.61125 4.72212 4.84219 4.94029 5.04444 5.09633 5.48481 5.71708 5.93431 5.94502 6.20689 6.48048 6.72143 6.84069 7.36109 7.36823 7.43909 8.89417 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.058764 B = 0.006028 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.365421 B = 4643.928829 C = 4927.951235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.035 3.965 3 H 0.046 0.954 4 C -0.535 4.535 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.547 3.453 13 O -0.590 6.590 14 N -0.659 5.659 15 C 0.122 3.878 16 C -0.131 4.131 17 C 0.538 3.462 18 N -0.827 5.827 19 O -0.587 6.587 20 C 0.110 3.890 21 H 0.052 0.948 22 H 0.016 0.984 23 H 0.074 0.926 24 H 0.266 0.734 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.157 0.843 28 H 0.421 0.579 29 H 0.410 0.590 30 H 0.075 0.925 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 8.932 -14.312 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.014 3.986 3 H 0.064 0.936 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.340 3.660 13 O -0.470 6.470 14 N -0.395 5.395 15 C -0.001 4.001 16 C -0.153 4.153 17 C 0.322 3.678 18 N -0.391 5.391 19 O -0.467 6.467 20 C -0.013 4.013 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.174 0.826 28 H 0.253 0.747 29 H 0.242 0.758 30 H 0.094 0.906 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.614 7.758 -14.140 16.209 hybrid contribution 0.274 -0.329 0.788 0.897 sum -1.340 7.429 -13.352 15.338 Atomic orbital electron populations 1.21575 0.95041 0.99138 1.01876 1.18728 0.95247 0.95996 0.88585 0.93588 1.21257 1.31968 1.12883 0.91211 0.93615 1.25567 0.95082 0.95729 1.01278 1.69923 1.36924 1.23383 1.24500 0.85650 0.78722 0.78668 0.78827 1.19628 1.20399 1.20117 1.21387 0.77984 0.83041 0.83555 1.90515 1.41003 1.28971 1.86535 1.49794 1.52566 1.32897 1.04282 1.23063 0.95633 0.91204 0.90187 1.23129 1.01757 0.98474 0.91911 1.20100 0.78401 0.83573 0.85722 1.43642 1.59726 1.07263 1.28435 1.90758 1.53476 1.42201 1.60236 1.22852 1.02481 0.96397 0.79592 0.92873 0.96502 0.90706 0.92431 0.88883 0.87304 0.82574 0.74716 0.75758 0.90646 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.85 71.98 0.64 -4.81 16 2 C 0.04 1.81 2.52 -12.29 -0.03 1.78 16 3 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.53 -31.42 8.37 25.60 0.21 -31.20 16 5 H 0.05 2.89 6.75 -2.91 -0.02 2.87 16 6 C 0.02 1.29 5.30 84.66 0.45 1.73 16 7 N -0.91 -50.41 11.32 21.45 0.24 -50.16 16 8 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 C 0.55 26.44 7.40 87.66 0.65 27.09 16 13 O -0.59 -33.55 16.23 -3.03 -0.05 -33.60 16 14 N -0.66 -23.63 3.64 -857.86 -3.12 -26.75 16 15 C 0.12 2.90 6.28 83.26 0.52 3.43 16 16 C -0.13 -2.55 4.51 -11.13 -0.05 -2.60 16 17 C 0.54 10.21 7.66 87.66 0.67 10.89 16 18 N -0.83 -7.66 8.87 -173.53 -1.54 -9.20 16 19 O -0.59 -16.86 16.78 -3.04 -0.05 -16.91 16 20 C 0.11 3.23 7.96 83.17 0.66 3.90 16 21 H 0.05 1.96 6.33 -2.38 -0.02 1.94 16 22 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 24 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 25 H 0.09 2.10 8.06 -2.38 -0.02 2.08 16 26 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.16 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.42 1.25 8.83 -92.71 -0.82 0.43 16 29 H 0.41 3.03 8.93 -92.71 -0.83 2.21 16 30 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.08 2.62 7.45 -2.39 -0.02 2.60 16 Total: -1.00 -77.32 268.01 0.75 -76.56 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -0.48 Total: 2.89 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 3.72 Total: 10.18 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -4.42 Total: -86.11 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.10 Total: -50.51 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.32 0.75 -76.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263876087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.629 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds