Wall clock time and date at job start Mon Mar 30 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 N 1.39339 * 125.33172 * 359.69714 * 14 12 2 16 16 C 1.34064 * 113.06769 * 179.78663 * 15 14 12 17 17 O 1.21289 * 125.58636 * 180.19346 * 16 15 14 18 18 C 1.51190 * 108.82499 * 0.47534 * 16 15 14 19 19 C 1.46932 * 125.33939 * 180.02562 * 14 12 2 20 20 H 1.08999 * 110.43473 * 298.87339 * 19 14 12 21 21 C 1.52997 * 110.43461 * 61.25093 * 19 14 12 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 0.96998 * 123.46478 * 359.97438 * 15 14 12 27 27 H 1.09004 * 110.46182 * 241.02030 * 18 16 15 28 28 H 1.08994 * 110.58008 * 118.48407 * 18 16 15 29 29 H 1.09002 * 109.47173 * 60.00613 * 21 19 14 30 30 H 1.08998 * 109.47221 * 180.02562 * 21 19 14 31 31 H 1.08997 * 109.47899 * 300.00349 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 7 0.9110 0.8650 -2.7108 16 6 0.7489 1.1049 -4.0198 17 8 0.1048 2.0158 -4.4959 18 6 1.4946 0.0501 -4.8052 19 6 2.1296 -0.8485 -3.7281 20 1 3.2162 -0.8366 -3.8120 21 6 1.6016 -2.2796 -3.8469 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 0.5174 1.4127 -2.0138 27 1 2.2669 0.5094 -5.4223 28 1 0.8060 -0.5253 -5.4238 29 1 0.5125 -2.2699 -3.8040 30 1 1.9243 -2.7084 -4.7956 31 1 1.9922 -2.8805 -3.0256 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588103552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:33 Heat of formation + Delta-G solvation = -33.686437 kcal Electronic energy + Delta-G solvation = -16115.420553 eV Core-core repulsion = 13398.443066 eV Total energy + Delta-G solvation = -2716.977487 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.82768 -38.45998 -36.50065 -34.21396 -32.93274 -30.93457 -29.91586 -27.53068 -25.32369 -23.50872 -21.34645 -21.12612 -20.11254 -17.00899 -16.38411 -16.14377 -15.88293 -15.07265 -14.61018 -14.31189 -14.26490 -13.70237 -13.30897 -12.78265 -12.67633 -12.22290 -11.97080 -11.59846 -11.35735 -11.14516 -10.88099 -10.78906 -10.55019 -10.42811 -10.10392 -9.91580 -9.13563 -8.90415 -8.48979 -7.80827 -6.15578 -4.20054 2.23907 2.52638 3.25758 3.33979 3.37171 3.41471 4.07522 4.28517 4.40776 4.52962 4.88840 5.18278 5.29270 5.48618 5.53807 5.66948 5.99234 6.04473 6.31621 6.33242 6.44233 6.62325 6.71939 7.14251 7.27404 7.59601 7.76003 7.90590 8.09741 8.48895 8.79207 8.89613 9.46326 10.92145 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.041965 B = 0.007909 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.059038 B = 3539.284978 C = 4035.614599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 H 0.056 0.944 4 C -0.505 4.505 5 H 0.077 0.923 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.903 3.097 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.542 3.458 13 O -0.517 6.517 14 N -0.432 5.432 15 N -0.510 5.510 16 C 0.523 3.477 17 O -0.532 6.532 18 C -0.163 4.163 19 C 0.134 3.866 20 H 0.094 0.906 21 C -0.163 4.163 22 H 0.099 0.901 23 H 0.036 0.964 24 H 0.013 0.987 25 H 0.263 0.737 26 H 0.432 0.568 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 -1.922 -11.248 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.073 0.927 4 C -0.543 4.543 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.334 3.666 13 O -0.388 6.388 14 N -0.264 5.264 15 N -0.263 5.263 16 C 0.307 3.693 17 O -0.408 6.408 18 C -0.203 4.203 19 C 0.032 3.968 20 H 0.111 0.889 21 C -0.221 4.221 22 H 0.117 0.883 23 H 0.055 0.945 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.281 0.719 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.314 -2.004 -11.251 11.432 hybrid contribution 0.080 -0.116 1.148 1.157 sum 0.394 -2.119 -10.103 10.330 Atomic orbital electron populations 1.21899 0.96261 1.00435 1.01029 1.18978 0.94330 0.97051 0.88769 0.92681 1.21115 1.31480 1.13078 0.88649 0.90506 1.24959 0.94922 0.95010 0.99250 1.69859 1.36744 1.22897 1.23781 0.86346 0.78662 0.79757 0.82216 1.19476 1.20937 1.20942 1.22068 0.78561 0.84328 0.81625 1.90600 1.38113 1.26383 1.83663 1.48667 1.49106 1.21678 1.06934 1.45480 1.48421 1.23652 1.08786 1.20203 0.81057 0.85795 0.82197 1.90805 1.43316 1.34068 1.72616 1.22626 1.01808 0.97197 0.98694 1.21720 0.99962 0.93576 0.81569 0.88860 1.22183 1.01587 0.95147 1.03229 0.88286 0.94479 0.96849 0.92767 0.71942 0.86968 0.86817 0.92212 0.91179 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.74 37.16 0.32 -2.71 16 2 C 0.03 0.70 2.16 -92.92 -0.20 0.50 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -13.69 8.37 -34.44 -0.29 -13.98 16 5 H 0.08 2.19 6.75 -52.49 -0.35 1.83 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.23 11.32 55.43 0.63 -23.60 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.54 11.69 7.03 -10.98 -0.08 11.61 16 13 O -0.52 -12.35 14.45 5.56 0.08 -12.27 16 14 N -0.43 -7.46 3.64 -53.03 -0.19 -7.65 16 15 N -0.51 -8.22 5.82 31.22 0.18 -8.04 16 16 C 0.52 7.89 8.63 -11.06 -0.10 7.80 16 17 O -0.53 -9.56 18.03 5.55 0.10 -9.46 16 18 C -0.16 -1.81 6.61 -27.13 -0.18 -1.99 16 19 C 0.13 1.80 3.75 -67.19 -0.25 1.54 16 20 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 21 C -0.16 -2.03 9.10 37.16 0.34 -1.69 16 22 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.01 0.24 5.31 -51.93 -0.28 -0.03 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.43 7.05 6.41 -183.17 -1.17 5.88 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.11 1.04 7.72 -51.93 -0.40 0.64 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.22 6.84 -51.93 -0.35 0.86 16 LS Contribution 260.07 15.07 3.92 3.92 Total: -1.00 -30.39 260.07 -5.38 -35.77 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.55 Total: 2.66 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.52 Total: 2.60 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.62 Total: -39.30 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.18 Total: -21.73 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.39 -5.38 -35.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588103552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.083 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds