Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47337 * 2 1 4 4 C 1.37101 * 119.99824 * 91.46109 * 3 2 1 5 5 H 1.08002 * 119.99751 * 210.84146 * 4 3 2 6 6 C 1.38949 * 120.00260 * 30.83849 * 4 3 2 7 7 N 1.31412 * 120.00034 * 40.06717 * 6 4 3 8 8 Si 1.86798 * 120.00176 * 220.06829 * 6 4 3 9 9 H 1.48493 * 109.47183 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47187 * 59.99890 * 8 6 4 11 11 H 1.48501 * 109.47143 * 300.00088 * 8 6 4 12 12 C 1.34772 * 119.99875 * 271.46039 * 3 2 1 13 13 O 1.21295 * 120.00045 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00269 * 359.97438 * 12 3 2 15 15 H 1.08993 * 115.54825 * 332.76018 * 14 12 3 16 16 C 1.53001 * 117.49834 * 118.46543 * 14 12 3 17 17 C 1.52999 * 117.49914 * 187.08846 * 14 12 3 18 18 H 1.09000 * 117.49606 * 145.02319 * 17 14 12 19 19 C 1.50696 * 117.49807 * 0.02562 * 17 14 12 20 20 N 1.34782 * 119.99751 * 87.94705 * 19 17 14 21 21 O 1.21281 * 120.00202 * 267.94084 * 19 17 14 22 22 H 1.08997 * 109.46972 * 59.99929 * 1 2 3 23 23 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46998 * 300.00028 * 1 2 3 25 25 H 1.09004 * 109.46718 * 239.99837 * 2 1 3 26 26 H 1.09004 * 109.46669 * 120.00178 * 2 1 3 27 27 H 0.97009 * 119.99753 * 6.24102 * 7 6 4 28 28 H 1.08997 * 117.49885 * 214.98161 * 16 14 12 29 29 H 1.09007 * 117.49550 * 0.02562 * 16 14 12 30 30 H 0.96996 * 120.00006 * 359.97438 * 20 19 17 31 31 H 0.97001 * 119.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2755 2.0173 1.1870 5 1 2.1470 3.0868 1.2653 6 6 2.7012 1.2862 2.2892 7 7 3.5648 0.3078 2.1349 8 14 2.0461 1.6940 3.9903 9 1 2.6509 0.7745 4.9872 10 1 0.5696 1.5355 4.0032 11 1 2.3964 3.0959 4.3327 12 6 2.2150 2.0264 -1.1668 13 8 2.6198 3.1698 -1.1668 14 6 1.9330 1.3269 -2.4715 15 1 2.0276 0.2412 -2.4529 16 6 0.8550 1.9271 -3.3763 17 6 2.3310 2.0487 -3.7605 18 1 2.6871 1.4378 -4.5900 19 6 2.9756 3.4044 -3.6282 20 7 4.3121 3.5041 -3.4850 21 8 2.2918 4.4058 -3.6507 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9737 0.1538 1.2687 28 1 0.2401 1.2363 -3.9530 29 1 0.3501 2.8282 -3.0280 30 1 4.8589 2.7032 -3.4667 31 1 4.7270 4.3767 -3.4002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597334485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = -44.327676 kcal Electronic energy + Delta-G solvation = -16210.395998 eV Core-core repulsion = 13492.957072 eV Total energy + Delta-G solvation = -2717.438926 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76127 -38.09476 -35.70894 -34.73312 -32.96574 -32.04754 -29.49736 -25.71416 -24.11194 -22.96451 -22.19400 -19.90210 -18.66863 -17.51759 -16.88145 -16.52655 -15.60521 -14.83625 -14.46348 -14.08237 -13.75093 -13.51579 -13.23853 -12.97250 -12.40839 -12.04485 -11.69902 -11.36042 -11.17558 -10.92009 -10.57090 -10.23555 -10.21503 -10.08805 -9.98147 -9.36854 -9.05413 -8.84560 -8.35247 -7.78809 -6.73865 -3.87294 3.06920 3.30635 3.35796 3.54746 3.59892 3.95481 4.21292 4.43875 4.60281 4.90302 5.13194 5.25336 5.26897 5.49508 5.55634 5.80225 5.92346 5.96527 6.06540 6.19986 6.35812 6.40330 6.67890 6.86817 7.34088 7.89273 7.90132 8.16684 8.59749 8.90222 8.98209 9.40120 9.92707 10.49275 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.008964 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.411171 B = 3122.838692 C = 3485.469075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 N -0.437 5.437 4 C -0.416 4.416 5 H 0.086 0.914 6 C 0.022 3.978 7 N -0.850 5.850 8 Si 1.056 2.944 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.465 3.535 13 O -0.561 6.561 14 C -0.155 4.155 15 H 0.119 0.881 16 C -0.127 4.127 17 C -0.171 4.171 18 H 0.125 0.875 19 C 0.575 3.425 20 N -0.847 5.847 21 O -0.547 6.547 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.276 0.724 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.395 0.605 31 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 -4.272 -8.236 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.033 4.033 3 N -0.156 5.156 4 C -0.543 4.543 5 H 0.104 0.896 6 C -0.188 4.188 7 N -0.482 5.482 8 Si 0.882 3.118 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.254 3.746 13 O -0.444 6.444 14 C -0.177 4.177 15 H 0.136 0.864 16 C -0.165 4.165 17 C -0.193 4.193 18 H 0.143 0.857 19 C 0.360 3.640 20 N -0.409 5.409 21 O -0.424 6.424 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.222 0.778 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.103 -3.676 -6.648 7.882 hybrid contribution 0.486 0.141 -1.538 1.619 sum -1.617 -3.535 -8.185 9.061 Atomic orbital electron populations 1.22101 0.96962 1.00521 1.02250 1.21565 0.93768 0.85652 1.02289 1.43490 1.55664 1.11691 1.04768 1.20091 1.51074 0.95793 0.87309 0.89615 1.26238 0.93434 0.95343 1.03824 1.70781 1.17693 1.32644 1.27079 0.83714 0.76727 0.76579 0.74775 1.20611 1.20960 1.20814 1.19308 0.83540 0.88008 0.83760 1.90570 1.49989 1.18006 1.85827 1.22581 1.04828 0.99524 0.90738 0.86357 1.22891 0.89923 1.03075 1.00653 1.22142 1.00283 0.97152 0.99732 0.85696 1.19031 0.82075 0.89293 0.73564 1.43493 1.07903 1.11721 1.77744 1.90643 1.62632 1.38336 1.50794 0.93280 0.92983 0.92028 0.92791 0.89389 0.91349 0.87881 0.87506 0.77840 0.77327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.23 37.16 0.38 -2.46 16 2 C 0.09 1.88 5.39 -4.04 -0.02 1.86 16 3 N -0.44 -10.83 2.43 -114.81 -0.28 -11.11 16 4 C -0.42 -11.62 8.79 -14.93 -0.13 -11.75 16 5 H 0.09 2.63 7.77 -52.49 -0.41 2.22 16 6 C 0.02 0.58 4.44 -17.47 -0.08 0.50 16 7 N -0.85 -23.04 12.25 55.50 0.68 -22.36 16 8 Si 1.06 23.48 30.05 -169.99 -5.11 18.37 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.47 11.23 7.36 -10.99 -0.08 11.15 16 13 O -0.56 -15.65 13.69 -6.50 -0.09 -15.74 16 14 C -0.15 -2.78 5.42 -91.77 -0.50 -3.28 16 15 H 0.12 1.81 6.23 -51.93 -0.32 1.49 16 16 C -0.13 -2.06 9.75 -26.73 -0.26 -2.32 16 17 C -0.17 -2.78 6.18 -91.77 -0.57 -3.35 16 18 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 19 C 0.57 11.20 5.12 -10.99 -0.06 11.14 16 20 N -0.85 -13.52 8.74 31.22 0.27 -13.24 16 21 O -0.55 -12.97 17.14 -6.49 -0.11 -13.08 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.05 0.96 5.97 -51.93 -0.31 0.65 16 26 H 0.09 1.99 5.80 -51.93 -0.30 1.69 16 27 H 0.28 7.57 8.21 -40.82 -0.33 7.23 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.11 2.05 7.87 -51.93 -0.41 1.64 16 30 H 0.39 5.15 8.83 -40.82 -0.36 4.79 16 31 H 0.40 5.98 8.93 -40.82 -0.36 5.62 16 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -34.46 268.63 -5.62 -40.08 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.72 Total: 11.55 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.31 Total: 1.49 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.67 Total: -46.71 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.20 Total: -28.81 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.11 Total: 18.37 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.46 -5.62 -40.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597334485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.252 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds