Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47337 * 2 1 4 4 C 1.37101 * 119.99824 * 91.46109 * 3 2 1 5 5 H 1.08002 * 119.99751 * 210.84146 * 4 3 2 6 6 C 1.38949 * 120.00260 * 30.83849 * 4 3 2 7 7 N 1.31412 * 120.00034 * 40.06717 * 6 4 3 8 8 Si 1.86798 * 120.00176 * 220.06829 * 6 4 3 9 9 H 1.48493 * 109.47183 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47187 * 59.99890 * 8 6 4 11 11 H 1.48501 * 109.47143 * 300.00088 * 8 6 4 12 12 C 1.34772 * 119.99875 * 271.46039 * 3 2 1 13 13 O 1.21295 * 120.00045 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00269 * 359.97438 * 12 3 2 15 15 H 1.08993 * 115.54825 * 332.76018 * 14 12 3 16 16 C 1.53001 * 117.49834 * 118.46543 * 14 12 3 17 17 C 1.52999 * 117.49914 * 187.08846 * 14 12 3 18 18 H 1.09000 * 117.49606 * 145.02319 * 17 14 12 19 19 C 1.50696 * 117.49807 * 0.02562 * 17 14 12 20 20 N 1.34782 * 119.99751 * 87.94705 * 19 17 14 21 21 O 1.21281 * 120.00202 * 267.94084 * 19 17 14 22 22 H 1.08997 * 109.46972 * 59.99929 * 1 2 3 23 23 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46998 * 300.00028 * 1 2 3 25 25 H 1.09004 * 109.46718 * 239.99837 * 2 1 3 26 26 H 1.09004 * 109.46669 * 120.00178 * 2 1 3 27 27 H 0.97009 * 119.99753 * 6.24102 * 7 6 4 28 28 H 1.08997 * 117.49885 * 214.98161 * 16 14 12 29 29 H 1.09007 * 117.49550 * 0.02562 * 16 14 12 30 30 H 0.96996 * 120.00006 * 359.97438 * 20 19 17 31 31 H 0.97001 * 119.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2755 2.0173 1.1870 5 1 2.1470 3.0868 1.2653 6 6 2.7012 1.2862 2.2892 7 7 3.5648 0.3078 2.1349 8 14 2.0461 1.6940 3.9903 9 1 2.6509 0.7745 4.9872 10 1 0.5696 1.5355 4.0032 11 1 2.3964 3.0959 4.3327 12 6 2.2150 2.0264 -1.1668 13 8 2.6198 3.1698 -1.1668 14 6 1.9330 1.3269 -2.4715 15 1 2.0276 0.2412 -2.4529 16 6 0.8550 1.9271 -3.3763 17 6 2.3310 2.0487 -3.7605 18 1 2.6871 1.4378 -4.5900 19 6 2.9756 3.4044 -3.6282 20 7 4.3121 3.5041 -3.4850 21 8 2.2918 4.4058 -3.6507 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9737 0.1538 1.2687 28 1 0.2401 1.2363 -3.9530 29 1 0.3501 2.8282 -3.0280 30 1 4.8589 2.7032 -3.4667 31 1 4.7270 4.3767 -3.4002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597334485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = -70.702359 kcal Electronic energy + Delta-G solvation = -16211.539690 eV Core-core repulsion = 13492.957072 eV Total energy + Delta-G solvation = -2718.582618 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34572 -39.79973 -37.37132 -36.46614 -34.42620 -33.99068 -31.17437 -27.54384 -25.59917 -24.55803 -23.81532 -21.37300 -20.38005 -19.25461 -18.55830 -17.92292 -17.26397 -16.51982 -16.17137 -15.76975 -15.53911 -15.12116 -14.78055 -14.53501 -13.97272 -13.91415 -13.10340 -13.06409 -12.77925 -12.73004 -12.12628 -11.95771 -11.89310 -11.53770 -11.45578 -10.94666 -10.77146 -10.50003 -10.25360 -9.75801 -8.85072 -5.99725 1.41687 1.52795 1.65008 1.79852 2.00063 2.35861 2.58003 2.72969 3.06704 3.13203 3.75336 3.80907 3.89439 4.07007 4.25596 4.37783 4.52131 4.60652 4.79183 4.84757 4.97025 5.09514 5.11902 5.39811 5.83758 5.93498 6.00303 6.58367 6.62472 6.99442 7.44123 7.51100 8.01104 8.37248 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.008964 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.411171 B = 3122.838692 C = 3485.469075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.090 3.910 3 N -0.452 5.452 4 C -0.446 4.446 5 H 0.041 0.959 6 C -0.003 4.003 7 N -0.856 5.856 8 Si 1.101 2.899 9 H -0.271 1.271 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.452 3.548 13 O -0.613 6.613 14 C -0.159 4.159 15 H 0.157 0.843 16 C -0.116 4.116 17 C -0.161 4.161 18 H 0.182 0.818 19 C 0.557 3.443 20 N -0.835 5.835 21 O -0.602 6.602 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.267 0.733 28 H 0.157 0.843 29 H 0.067 0.933 30 H 0.410 0.590 31 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.398 -6.773 -9.400 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.033 4.033 3 N -0.171 5.171 4 C -0.572 4.572 5 H 0.059 0.941 6 C -0.210 4.210 7 N -0.487 5.487 8 Si 0.922 3.078 9 H -0.195 1.195 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.242 3.758 13 O -0.499 6.499 14 C -0.181 4.181 15 H 0.174 0.826 16 C -0.154 4.154 17 C -0.182 4.182 18 H 0.199 0.801 19 C 0.344 3.656 20 N -0.396 5.396 21 O -0.484 6.484 22 H 0.077 0.923 23 H 0.109 0.891 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.175 0.825 29 H 0.086 0.914 30 H 0.240 0.760 31 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.728 -6.237 -7.823 10.370 hybrid contribution 0.756 0.973 -1.215 1.730 sum -1.973 -5.264 -9.038 10.644 Atomic orbital electron populations 1.22033 0.94705 1.02775 1.01466 1.21756 0.95596 0.83194 1.02794 1.43731 1.55960 1.13208 1.04164 1.19854 1.53160 0.94333 0.89864 0.94135 1.27391 0.92604 0.94604 1.06440 1.70889 1.18202 1.33178 1.26479 0.83142 0.77098 0.76430 0.71151 1.19544 1.19255 1.20826 1.20382 0.82021 0.87610 0.85751 1.90539 1.51865 1.20439 1.87088 1.22432 1.07104 1.00768 0.87749 0.82554 1.23026 0.90274 1.02283 0.99826 1.22405 1.00205 0.95472 1.00096 0.80123 1.19812 0.82748 0.90280 0.72745 1.43443 1.07372 1.12726 1.76044 1.90613 1.63937 1.40438 1.53382 0.92338 0.89094 0.94568 0.89313 0.91709 0.92387 0.82484 0.91442 0.76007 0.77145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 10.23 71.98 0.74 -4.27 16 2 C 0.09 3.53 5.39 86.38 0.47 3.99 16 3 N -0.45 -22.53 2.43 -635.52 -1.55 -24.08 16 4 C -0.45 -25.73 8.79 84.04 0.74 -24.99 16 5 H 0.04 2.66 7.77 -2.91 -0.02 2.64 16 6 C 0.00 -0.17 4.44 84.93 0.38 0.21 16 7 N -0.86 -46.53 12.25 21.66 0.27 -46.26 16 8 Si 1.10 47.67 30.05 68.60 2.06 49.73 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 C 0.45 21.84 7.36 87.66 0.65 22.49 16 13 O -0.61 -35.42 13.69 8.44 0.12 -35.30 16 14 C -0.16 -5.23 5.42 -11.54 -0.06 -5.30 16 15 H 0.16 3.93 6.23 -2.39 -0.01 3.92 16 16 C -0.12 -3.39 9.75 30.60 0.30 -3.09 16 17 C -0.16 -4.67 6.18 -11.54 -0.07 -4.74 16 18 H 0.18 3.22 8.14 -2.39 -0.02 3.20 16 19 C 0.56 21.37 5.12 87.65 0.45 21.82 16 20 N -0.83 -26.15 8.74 -173.53 -1.52 -27.67 16 21 O -0.60 -29.24 17.14 8.48 0.15 -29.10 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.09 2.81 5.97 -2.38 -0.01 2.80 16 26 H 0.06 2.86 5.80 -2.38 -0.01 2.85 16 27 H 0.27 14.72 8.21 -92.70 -0.76 13.96 16 28 H 0.16 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.07 2.55 7.87 -2.38 -0.02 2.53 16 30 H 0.41 10.07 8.83 -92.71 -0.82 9.25 16 31 H 0.40 12.13 8.93 -92.71 -0.83 11.30 16 Total: -1.00 -80.57 268.63 2.63 -77.94 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.47 Total: 28.60 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 3.58 Total: 6.13 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -2.80 Total: -98.00 kcal Atomic # 8 Polarization: -64.66 SS G_CDS: 0.26 Total: -64.40 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.06 Total: 49.73 kcal Total: -80.57 2.63 -77.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597334485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.235 kcal (2) G-P(sol) polarization free energy of solvation -80.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds