Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99818 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00472 * 3 2 1 5 5 H 1.48499 * 109.46939 * 30.00744 * 3 2 1 6 6 H 1.48500 * 109.46981 * 150.00178 * 3 2 1 7 7 C 1.37875 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99450 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00269 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47076 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47242 * 180.02562 * 10 9 7 12 12 C 1.46854 * 111.00034 * 293.95897 * 11 10 9 13 13 C 1.53029 * 109.52283 * 174.15832 * 12 11 10 14 14 C 1.53126 * 109.27795 * 59.18140 * 13 12 11 15 15 C 1.53124 * 109.15878 * 302.34185 * 14 13 12 16 16 H 1.09004 * 109.50324 * 297.71684 * 15 14 13 17 17 C 1.50692 * 109.50139 * 177.59632 * 15 14 13 18 18 N 1.34780 * 120.00267 * 60.00049 * 17 15 14 19 19 O 1.21283 * 120.00128 * 240.00218 * 17 15 14 20 20 C 1.46843 * 111.00022 * 169.75019 * 11 10 9 21 21 H 0.97003 * 120.00030 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.47008 * 60.00072 * 9 7 2 23 23 H 1.08993 * 109.47606 * 299.99711 * 9 7 2 24 24 H 1.09008 * 109.46706 * 60.00422 * 10 9 7 25 25 H 1.08997 * 109.47569 * 300.00477 * 10 9 7 26 26 H 1.08999 * 109.45788 * 54.14266 * 12 11 10 27 27 H 1.09001 * 109.46218 * 294.17869 * 12 11 10 28 28 H 1.08994 * 109.50822 * 299.23828 * 13 12 11 29 29 H 1.08998 * 109.53380 * 179.13826 * 13 12 11 30 30 H 1.08998 * 109.52297 * 62.25132 * 14 13 12 31 31 H 1.08999 * 109.51925 * 182.44336 * 14 13 12 32 32 H 0.96996 * 119.99698 * 0.02562 * 18 17 15 33 33 H 0.96999 * 119.99995 * 179.97438 * 18 17 15 34 34 H 1.09001 * 109.45906 * 305.85080 * 20 11 10 35 35 H 1.08994 * 109.46526 * 65.83386 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1292 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0009 12 6 6.0169 -2.0798 -1.2538 13 6 7.5397 -1.9606 -1.1606 14 6 8.1404 -3.3454 -0.9034 15 6 7.5397 -3.9231 0.3811 16 1 7.8029 -3.2852 1.2249 17 6 8.0813 -5.3106 0.6100 18 7 9.4075 -5.5006 0.7572 19 8 7.3239 -6.2564 0.6618 20 6 6.0168 -3.9854 0.2431 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8745 -0.6800 -0.8911 24 1 3.6579 -3.1504 -0.8908 25 1 3.6585 -3.1502 0.8892 26 1 5.5850 -1.0934 -1.4226 27 1 5.7541 -2.7377 -2.0822 28 1 7.8029 -1.2919 -0.3411 29 1 7.9320 -1.5617 -2.0960 30 1 7.9104 -4.0035 -1.7413 31 1 9.2213 -3.2587 -0.7931 32 1 10.0133 -4.7441 0.7162 33 1 9.7561 -6.3936 0.9050 34 1 5.5849 -4.3830 1.1616 35 1 5.7542 -4.6344 -0.5923 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019488745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = -81.892799 kcal Electronic energy + Delta-G solvation = -15854.344842 eV Core-core repulsion = 13271.110065 eV Total energy + Delta-G solvation = -2583.234777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14638 -39.25658 -35.94377 -34.84431 -34.08355 -32.01572 -31.43924 -26.98903 -25.38527 -24.08250 -22.50681 -21.27443 -20.55465 -19.05960 -18.32358 -17.66268 -16.63237 -16.39366 -15.99662 -15.86983 -15.34460 -15.09054 -14.66561 -14.47517 -14.32797 -13.98802 -13.46247 -13.27777 -12.82989 -12.48951 -12.05473 -12.00001 -11.81725 -11.65390 -11.58981 -11.35669 -11.24222 -10.83968 -10.72831 -10.63689 -9.27885 -8.29518 -6.34684 1.37128 1.40260 1.53571 1.62220 2.37877 2.47377 3.05874 3.12597 3.64597 3.82481 3.95619 4.18112 4.29772 4.32247 4.41568 4.53090 4.60988 4.74415 4.80152 4.92357 4.96977 5.00344 5.10824 5.17861 5.27263 5.42524 5.49140 5.63167 5.91892 6.10136 6.19584 6.31233 6.47319 6.72953 7.30087 7.36578 8.87543 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.048210 B = 0.005784 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.657842 B = 4839.595839 C = 5221.054640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.538 4.538 8 H 0.027 0.973 9 C 0.004 3.996 10 C 0.081 3.919 11 N -0.540 5.540 12 C 0.040 3.960 13 C -0.107 4.107 14 C -0.103 4.103 15 C -0.098 4.098 16 H 0.124 0.876 17 C 0.524 3.476 18 N -0.830 5.830 19 O -0.597 6.597 20 C 0.075 3.925 21 H 0.267 0.733 22 H 0.025 0.975 23 H 0.022 0.978 24 H 0.012 0.988 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.420 0.580 33 H 0.408 0.592 34 H 0.061 0.939 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.054 -4.129 -1.089 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.033 4.033 10 C -0.047 4.047 11 N -0.264 5.264 12 C -0.088 4.088 13 C -0.145 4.145 14 C -0.141 4.141 15 C -0.120 4.120 16 H 0.142 0.858 17 C 0.309 3.691 18 N -0.395 5.395 19 O -0.478 6.478 20 C -0.053 4.053 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.251 0.749 33 H 0.239 0.761 34 H 0.080 0.920 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 24.468 -4.201 -0.704 24.836 hybrid contribution -0.710 -0.205 -0.558 0.926 sum 23.758 -4.406 -1.262 24.196 Atomic orbital electron populations 1.70075 1.08443 1.28303 1.52470 1.26029 0.95626 1.03684 0.93791 0.85580 0.79551 0.77701 0.79364 1.18857 1.20903 1.16758 1.21427 0.92075 0.93154 1.50952 0.95489 1.19413 0.93189 0.93782 0.96947 1.21819 0.85979 0.98047 0.98845 1.61979 1.07295 1.21542 1.35576 1.22327 0.97533 0.99696 0.89248 1.21581 0.91903 0.97225 1.03754 1.21596 1.01637 0.96351 0.94485 1.21297 0.94512 0.93489 1.02682 0.85815 1.20765 0.83252 0.90805 0.74327 1.43638 1.06645 1.14612 1.74561 1.90743 1.59108 1.45224 1.52715 1.21748 0.94761 0.88650 1.00172 0.92396 0.95652 0.95934 0.96922 0.92579 0.91108 0.95907 0.90048 0.88892 0.92510 0.87271 0.74852 0.76069 0.92046 0.96313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 2 C 0.01 0.32 5.47 84.66 0.46 0.79 16 3 Si 0.96 44.80 27.47 68.60 1.88 46.68 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.54 -32.23 9.66 25.60 0.25 -31.99 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 9 C 0.00 0.21 3.97 29.85 0.12 0.33 16 10 C 0.08 3.50 4.90 86.30 0.42 3.92 16 11 N -0.54 -18.56 4.66 -896.35 -4.17 -22.73 16 12 C 0.04 1.16 5.29 86.32 0.46 1.62 16 13 C -0.11 -2.01 6.09 30.65 0.19 -1.82 16 14 C -0.10 -1.62 5.16 30.68 0.16 -1.46 16 15 C -0.10 -2.07 2.69 -11.49 -0.03 -2.10 16 16 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 17 C 0.52 11.46 7.43 87.65 0.65 12.11 16 18 N -0.83 -9.14 8.78 -173.53 -1.52 -10.66 16 19 O -0.60 -19.66 16.82 -3.04 -0.05 -19.71 16 20 C 0.08 2.35 4.03 86.33 0.35 2.70 16 21 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 22 H 0.03 1.23 7.20 -2.38 -0.02 1.22 16 23 H 0.02 1.05 5.87 -2.39 -0.01 1.04 16 24 H 0.01 0.57 8.12 -2.38 -0.02 0.55 16 25 H 0.06 2.51 7.98 -2.39 -0.02 2.49 16 26 H 0.07 2.26 6.22 -2.39 -0.01 2.24 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 0.83 7.65 -2.39 -0.02 0.81 16 32 H 0.42 1.56 8.30 -92.71 -0.77 0.79 16 33 H 0.41 3.78 8.93 -92.71 -0.83 2.95 16 34 H 0.06 2.11 7.99 -2.39 -0.02 2.09 16 35 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 Total: -1.00 -76.96 280.48 -1.11 -78.06 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -0.56 Total: 5.04 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 3.02 Total: -15.90 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -5.40 Total: -94.17 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -76.96 -1.11 -78.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019488745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.830 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds