Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47239 * 270.00094 * 3 2 1 5 5 H 1.48501 * 109.47050 * 29.99555 * 3 2 1 6 6 H 1.48496 * 109.47181 * 149.99809 * 3 2 1 7 7 C 1.37872 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00062 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00200 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99652 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00552 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47598 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.53210 * 55.09886 * 14 13 11 16 16 C 1.53118 * 109.50409 * 175.19932 * 14 13 11 17 17 C 1.53121 * 109.15998 * 177.59998 * 16 14 13 18 18 C 1.53044 * 109.27467 * 302.34543 * 17 16 14 19 19 N 1.46847 * 109.52516 * 59.18169 * 18 17 16 20 20 C 1.46848 * 111.19556 * 298.25761 * 19 18 17 21 21 H 0.97001 * 119.99585 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46577 * 60.00314 * 9 7 2 23 23 H 1.08993 * 109.47119 * 300.00853 * 9 7 2 24 24 H 0.97001 * 120.00147 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.46660 * 60.00121 * 13 11 10 26 26 H 1.09002 * 109.47293 * 300.00654 * 13 11 10 27 27 H 1.09004 * 109.52160 * 297.49671 * 16 14 13 28 28 H 1.08992 * 109.52149 * 57.63086 * 16 14 13 29 29 H 1.08996 * 109.50720 * 62.28327 * 17 16 14 30 30 H 1.08999 * 109.50475 * 182.36454 * 17 16 14 31 31 H 1.08999 * 109.45943 * 299.16193 * 18 17 16 32 32 H 1.09003 * 109.46209 * 179.19733 * 18 17 16 33 33 H 1.00901 * 110.99839 * 174.16251 * 19 18 17 34 34 H 1.09000 * 109.46085 * 181.75720 * 20 19 18 35 35 H 1.08999 * 109.45956 * 301.72471 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0288 -0.0016 14 6 1.9682 -7.3538 -0.0015 15 1 1.2766 -7.3754 -0.8437 16 6 2.9581 -8.5156 -0.1229 17 6 2.1900 -9.8388 -0.0617 18 6 1.4006 -9.9046 1.2478 19 7 0.4675 -8.7727 1.3157 20 6 1.1852 -7.4916 1.3061 21 1 -0.4849 0.8401 -0.0004 22 1 0.6241 -2.5566 -0.8904 23 1 0.6247 -2.5570 0.8895 24 1 3.1567 -3.4353 -0.0002 25 1 3.3598 -5.9714 0.8884 26 1 3.3598 -5.9706 -0.8916 27 1 3.4874 -8.4454 -1.0732 28 1 3.6745 -8.4709 0.6973 29 1 1.5019 -9.8996 -0.9048 30 1 2.8935 -10.6703 -0.1054 31 1 2.0904 -9.8577 2.0904 32 1 0.8413 -10.8393 1.2881 33 1 -0.1313 -8.8457 2.1246 34 1 0.4694 -6.6737 1.3888 35 1 1.8759 -7.4561 2.1485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054305941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -61.946108 kcal Electronic energy + Delta-G solvation = -15586.309899 eV Core-core repulsion = 13003.940075 eV Total energy + Delta-G solvation = -2582.369824 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.43803 -37.87547 -34.18895 -33.04265 -32.27529 -31.44525 -28.10837 -26.26692 -23.65578 -22.89983 -21.63529 -19.65262 -19.43580 -16.99320 -16.44150 -15.56209 -15.26534 -15.05004 -14.50969 -14.29399 -13.91074 -13.67532 -13.25009 -12.89288 -12.44163 -12.20936 -11.93577 -11.86121 -11.36396 -11.05055 -10.95823 -10.86454 -10.59951 -10.45732 -10.32145 -10.19389 -9.38149 -8.88259 -8.71642 -8.37689 -7.83497 -6.15662 -4.22569 3.24558 3.30640 3.33041 3.43324 4.10522 4.26432 4.39022 4.82084 4.88609 4.99596 5.15176 5.20428 5.31347 5.44199 5.59133 5.60853 5.70853 5.73303 5.78551 5.89900 6.00170 6.06031 6.13800 6.49439 6.56096 7.12400 7.33514 7.43190 7.49076 7.54174 7.68700 7.98901 8.66853 8.80305 9.15672 9.44438 10.94572 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.071138 B = 0.004680 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.507273 B = 5981.314352 C = 6214.792901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.715 5.715 11 C 0.495 3.505 12 O -0.551 6.551 13 C -0.139 4.139 14 C -0.067 4.067 15 H 0.086 0.914 16 C -0.118 4.118 17 C -0.117 4.117 18 C 0.056 3.944 19 N -0.688 5.688 20 C 0.058 3.942 21 H 0.266 0.734 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.341 0.659 34 H 0.099 0.901 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -16.107 1.774 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.431 6.431 13 C -0.179 4.179 14 C -0.086 4.086 15 H 0.104 0.896 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.073 4.073 19 N -0.319 5.319 20 C -0.071 4.071 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.222 0.778 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.118 0.882 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.014 -16.100 1.106 17.222 hybrid contribution 1.327 1.106 0.922 1.958 sum 7.341 -14.994 2.029 16.817 Atomic orbital electron populations 1.69978 1.06110 1.27268 1.48953 1.24953 0.94905 0.99438 0.94721 0.86422 0.79617 0.82690 0.78222 1.20459 1.21002 1.19768 1.21242 0.93248 0.90543 1.53142 0.91949 1.19084 0.88365 0.82072 0.97667 1.46498 1.11013 1.06329 1.72479 1.20527 0.89645 0.84410 0.77410 1.90635 1.16938 1.84747 1.50773 1.21742 0.98577 0.93915 1.03704 1.20881 0.96288 0.91853 0.99564 0.89561 1.21666 0.97617 0.94629 1.01627 1.21563 0.98620 0.97079 0.98187 1.21922 0.94439 0.94229 0.96748 1.60221 1.22409 1.02005 1.47293 1.22170 0.97448 0.92063 0.95398 0.92462 0.95585 0.95629 0.77807 0.89736 0.89282 0.91803 0.92417 0.91115 0.91927 0.95713 0.91263 0.84173 0.88239 0.96208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 10 N -0.72 -15.08 5.55 -61.48 -0.34 -15.42 16 11 C 0.49 9.76 7.55 -10.99 -0.08 9.68 16 12 O -0.55 -13.02 13.97 5.55 0.08 -12.94 16 13 C -0.14 -1.94 5.18 -27.89 -0.14 -2.09 16 14 C -0.07 -0.93 2.00 -90.54 -0.18 -1.11 16 15 H 0.09 1.41 7.96 -51.93 -0.41 0.99 16 16 C -0.12 -1.28 5.29 -26.61 -0.14 -1.42 16 17 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 18 C 0.06 0.59 6.55 -3.83 -0.03 0.57 16 19 N -0.69 -8.89 6.85 -113.81 -0.78 -9.67 16 20 C 0.06 0.85 5.56 -3.83 -0.02 0.82 16 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.34 3.87 8.90 -39.29 -0.35 3.52 16 34 H 0.10 1.78 5.97 -51.93 -0.31 1.47 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 285.51 15.07 4.30 4.30 Total: -1.00 -31.58 285.51 -7.82 -39.41 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.60 Total: 5.72 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.20 Total: -1.77 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.38 Total: -50.62 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.58 -7.82 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054305941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.538 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds