Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47239 * 270.00094 * 3 2 1 5 5 H 1.48501 * 109.47050 * 29.99555 * 3 2 1 6 6 H 1.48496 * 109.47181 * 149.99809 * 3 2 1 7 7 C 1.37872 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00062 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00200 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99652 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00552 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47598 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.53210 * 55.09886 * 14 13 11 16 16 C 1.53118 * 109.50409 * 175.19932 * 14 13 11 17 17 C 1.53121 * 109.15998 * 177.59998 * 16 14 13 18 18 C 1.53044 * 109.27467 * 302.34543 * 17 16 14 19 19 N 1.46847 * 109.52516 * 59.18169 * 18 17 16 20 20 C 1.46848 * 111.19556 * 298.25761 * 19 18 17 21 21 H 0.97001 * 119.99585 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46577 * 60.00314 * 9 7 2 23 23 H 1.08993 * 109.47119 * 300.00853 * 9 7 2 24 24 H 0.97001 * 120.00147 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.46660 * 60.00121 * 13 11 10 26 26 H 1.09002 * 109.47293 * 300.00654 * 13 11 10 27 27 H 1.09004 * 109.52160 * 297.49671 * 16 14 13 28 28 H 1.08992 * 109.52149 * 57.63086 * 16 14 13 29 29 H 1.08996 * 109.50720 * 62.28327 * 17 16 14 30 30 H 1.08999 * 109.50475 * 182.36454 * 17 16 14 31 31 H 1.08999 * 109.45943 * 299.16193 * 18 17 16 32 32 H 1.09003 * 109.46209 * 179.19733 * 18 17 16 33 33 H 1.00901 * 110.99839 * 174.16251 * 19 18 17 34 34 H 1.09000 * 109.46085 * 181.75720 * 20 19 18 35 35 H 1.08999 * 109.45956 * 301.72471 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0288 -0.0016 14 6 1.9682 -7.3538 -0.0015 15 1 1.2766 -7.3754 -0.8437 16 6 2.9581 -8.5156 -0.1229 17 6 2.1900 -9.8388 -0.0617 18 6 1.4006 -9.9046 1.2478 19 7 0.4675 -8.7727 1.3157 20 6 1.1852 -7.4916 1.3061 21 1 -0.4849 0.8401 -0.0004 22 1 0.6241 -2.5566 -0.8904 23 1 0.6247 -2.5570 0.8895 24 1 3.1567 -3.4353 -0.0002 25 1 3.3598 -5.9714 0.8884 26 1 3.3598 -5.9706 -0.8916 27 1 3.4874 -8.4454 -1.0732 28 1 3.6745 -8.4709 0.6973 29 1 1.5019 -9.8996 -0.9048 30 1 2.8935 -10.6703 -0.1054 31 1 2.0904 -9.8577 2.0904 32 1 0.8413 -10.8393 1.2881 33 1 -0.1313 -8.8457 2.1246 34 1 0.4694 -6.6737 1.3888 35 1 1.8759 -7.4561 2.1485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054305941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -86.513304 kcal Electronic energy + Delta-G solvation = -15587.375213 eV Core-core repulsion = 13003.940075 eV Total energy + Delta-G solvation = -2583.435138 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86720 -39.12008 -36.12984 -34.38245 -34.08395 -32.39433 -29.84354 -27.79307 -24.73006 -24.62955 -22.90748 -21.22692 -20.52173 -18.85772 -17.54348 -17.33390 -16.89955 -16.54876 -16.04905 -15.44728 -15.28705 -14.81637 -14.60549 -14.07391 -14.02557 -13.83747 -13.35084 -13.28207 -12.91522 -12.75012 -12.50126 -12.21927 -11.95239 -11.60357 -11.50003 -11.46144 -11.21272 -10.80029 -10.51263 -9.77824 -9.35184 -8.29307 -6.46213 1.42865 1.45451 1.56691 1.83728 2.33339 2.65002 3.05542 3.29318 3.85331 3.88472 3.98640 4.16697 4.27219 4.42540 4.47292 4.65168 4.71305 4.79181 4.85931 4.95727 5.07450 5.10211 5.16667 5.23841 5.25494 5.41123 5.51802 5.54253 5.72943 5.86053 6.15232 6.49836 6.65709 6.96286 7.23863 7.56234 8.83023 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.071138 B = 0.004680 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.507273 B = 5981.314352 C = 6214.792901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.711 5.711 11 C 0.489 3.511 12 O -0.596 6.596 13 C -0.123 4.123 14 C -0.066 4.066 15 H 0.054 0.946 16 C -0.111 4.111 17 C -0.118 4.118 18 C 0.054 3.946 19 N -0.704 5.704 20 C 0.061 3.939 21 H 0.268 0.732 22 H -0.016 1.016 23 H -0.015 1.015 24 H 0.408 0.592 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.346 0.654 34 H 0.056 0.944 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.360 -16.843 1.915 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.361 5.361 11 C 0.277 3.723 12 O -0.478 6.478 13 C -0.163 4.163 14 C -0.086 4.086 15 H 0.072 0.928 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.075 4.075 19 N -0.336 5.336 20 C -0.068 4.068 21 H 0.077 0.923 22 H 0.002 0.998 23 H 0.003 0.997 24 H 0.244 0.756 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.074 0.926 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.255 -16.876 1.247 19.287 hybrid contribution 0.246 1.247 0.887 1.550 sum 9.501 -15.629 2.135 18.414 Atomic orbital electron populations 1.70147 1.08348 1.28550 1.50052 1.26088 0.95764 1.03983 0.93833 0.85146 0.78498 0.76888 0.78613 1.19587 1.20978 1.17824 1.21642 0.94325 0.90639 1.52822 0.89775 1.18505 0.88793 0.84604 0.93845 1.46256 1.11067 1.05719 1.73063 1.21660 0.90152 0.85062 0.75396 1.90628 1.19586 1.85373 1.52229 1.21762 0.97264 0.90727 1.06538 1.20869 0.96597 0.93306 0.97792 0.92758 1.21636 0.96921 0.93091 1.03174 1.21607 0.98834 0.97775 0.97326 1.22041 0.94441 0.93608 0.97403 1.60206 1.23308 1.02181 1.47906 1.21994 0.96756 0.91678 0.96388 0.92272 0.99767 0.99699 0.75641 0.86699 0.86181 0.90236 0.90709 0.92518 0.89203 0.94668 0.89857 0.83625 0.92580 0.95021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.15 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.51 29.54 68.60 2.03 44.54 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.56 -30.59 9.28 25.60 0.24 -30.35 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.84 5.43 85.64 0.46 15.31 16 10 N -0.71 -30.25 5.55 -466.80 -2.59 -32.84 16 11 C 0.49 19.55 7.55 87.66 0.66 20.21 16 12 O -0.60 -29.74 13.97 -3.05 -0.04 -29.78 16 13 C -0.12 -3.18 5.18 29.85 0.15 -3.02 16 14 C -0.07 -1.76 2.00 -10.74 -0.02 -1.78 16 15 H 0.05 1.79 7.96 -2.39 -0.02 1.77 16 16 C -0.11 -2.03 5.29 30.67 0.16 -1.87 16 17 C -0.12 -2.07 6.09 30.65 0.19 -1.88 16 18 C 0.05 1.02 6.55 86.33 0.57 1.58 16 19 N -0.70 -17.92 6.85 -513.99 -3.52 -21.44 16 20 C 0.06 1.78 5.56 86.32 0.48 2.26 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 23 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 24 H 0.41 14.16 8.32 -92.71 -0.77 13.38 16 25 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.35 7.87 8.90 -89.69 -0.80 7.07 16 34 H 0.06 2.12 5.97 -2.39 -0.01 2.11 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.53 285.51 -0.97 -73.50 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.49 Total: 21.66 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 3.35 Total: 1.05 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -5.82 Total: -110.97 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.04 Total: -29.78 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -72.53 -0.97 -73.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054305941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.011 kcal (2) G-P(sol) polarization free energy of solvation -72.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds