Wall clock time and date at job start Mon Mar 30 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.53430 * 2 1 4 4 O 1.21277 * 120.00247 * 119.90196 * 3 2 1 5 5 N 1.34775 * 119.99763 * 299.89592 * 3 2 1 6 6 C 1.46498 * 120.00010 * 180.02562 * 5 3 2 7 7 C 1.50704 * 109.46965 * 180.02562 * 6 5 3 8 8 H 1.07995 * 119.99991 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99824 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99952 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00104 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47052 * 89.99643 * 11 9 7 13 13 H 1.48501 * 109.47478 * 210.00065 * 11 9 7 14 14 H 1.48501 * 109.47331 * 329.99965 * 11 9 7 15 15 C 1.53123 * 109.49034 * 120.09816 * 2 1 3 16 16 C 1.53127 * 109.15019 * 177.60705 * 15 2 1 17 17 C 1.53042 * 109.27596 * 302.34079 * 16 15 2 18 18 N 1.46843 * 109.52278 * 59.17923 * 17 16 15 19 19 C 1.46847 * 111.20124 * 298.25596 * 18 17 16 20 20 H 1.09004 * 109.47174 * 180.09886 * 1 2 3 21 21 H 1.09000 * 109.47475 * 300.10496 * 1 2 3 22 22 H 1.08997 * 109.47033 * 60.10400 * 1 2 3 23 23 H 0.97002 * 119.99704 * 0.02562 * 5 3 2 24 24 H 1.08999 * 109.47220 * 299.99673 * 6 5 3 25 25 H 1.08992 * 109.47089 * 59.99724 * 6 5 3 26 26 H 0.97002 * 120.00413 * 179.97438 * 10 9 7 27 27 H 1.09003 * 109.53012 * 57.70277 * 15 2 1 28 28 H 1.08997 * 109.57453 * 297.53555 * 15 2 1 29 29 H 1.08997 * 109.49981 * 182.39822 * 16 15 2 30 30 H 1.08999 * 109.50124 * 62.28085 * 16 15 2 31 31 H 1.08993 * 109.46299 * 299.16259 * 17 16 15 32 32 H 1.09004 * 109.45702 * 179.19362 * 17 16 15 33 33 H 1.00902 * 110.99874 * 174.15812 * 18 17 16 34 34 H 1.09002 * 109.46481 * 181.76055 * 19 18 17 35 35 H 1.08994 * 109.46283 * 301.73908 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0339 1.4203 0.0000 4 8 2.7301 1.8167 0.9105 5 7 1.7109 2.2498 -1.0119 6 6 2.2012 3.6303 -1.0122 7 6 1.7011 4.3407 -2.2437 8 1 1.0805 3.8162 -2.9550 9 6 2.0358 5.6603 -2.4620 10 7 2.7911 6.2992 -1.5955 11 14 1.4166 6.5406 -3.9887 12 1 0.1085 7.1795 -3.6953 13 1 2.3964 7.5811 -4.3919 14 1 1.2524 5.5611 -5.0927 15 6 2.0409 -0.7239 1.2489 16 6 3.5709 -0.7718 1.2111 17 6 4.0229 -1.4728 -0.0721 18 7 3.5093 -0.7420 -1.2376 19 6 2.0409 -0.7235 -1.2480 20 1 -0.3634 -1.0277 0.0018 21 1 -0.3634 0.5154 0.8890 22 1 -0.3633 0.5122 -0.8909 23 1 1.1538 1.9328 -1.7400 24 1 1.8373 4.1454 -0.1232 25 1 3.2911 3.6288 -1.0106 26 1 3.0270 7.2274 -1.7492 27 1 1.6450 -1.7393 1.2690 28 1 1.7152 -0.1881 2.1404 29 1 3.9392 -1.3232 2.0762 30 1 3.9674 0.2434 1.2301 31 1 3.6376 -2.4923 -0.0840 32 1 5.1121 -1.4958 -0.1089 33 1 3.8721 -1.1292 -2.0958 34 1 1.6905 -0.2024 -2.1389 35 1 1.6649 -1.7465 -1.2541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062853363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:28 Heat of formation + Delta-G solvation = -53.882882 kcal Electronic energy + Delta-G solvation = -16362.624383 eV Core-core repulsion = 13780.604207 eV Total energy + Delta-G solvation = -2582.020176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01260 -36.97879 -34.12232 -33.23351 -32.25424 -31.14407 -27.14936 -26.51285 -23.73646 -23.30011 -21.80077 -20.47305 -18.76170 -16.75233 -16.24521 -15.44408 -15.10836 -14.51486 -14.35927 -14.10027 -13.86917 -13.51513 -13.03681 -12.70166 -12.37597 -11.97386 -11.88496 -11.79128 -11.55415 -11.44976 -10.91486 -10.85869 -10.51969 -10.25707 -10.21583 -10.13964 -9.30735 -8.74413 -8.64522 -8.24381 -7.68518 -6.09819 -4.15908 3.27708 3.33677 3.36226 3.59527 4.15519 4.33259 4.47404 4.78269 4.99557 5.13731 5.26119 5.28774 5.44469 5.49450 5.60533 5.63298 5.73211 5.78346 5.91283 6.02447 6.07920 6.17001 6.29182 6.44252 6.82226 7.12160 7.43350 7.48590 7.62186 7.65370 7.77389 8.06720 8.79002 8.89833 9.30029 9.51484 11.00490 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.006623 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.113981 B = 4226.643121 C = 4277.045905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C 0.528 3.472 4 O -0.554 6.554 5 N -0.709 5.709 6 C 0.253 3.747 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.886 5.886 11 Si 0.902 3.098 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.091 4.091 16 C -0.131 4.131 17 C 0.062 3.938 18 N -0.685 5.685 19 C 0.074 3.926 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.386 0.614 24 H 0.023 0.977 25 H 0.026 0.974 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.342 0.658 34 H 0.078 0.922 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -15.818 0.808 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C 0.313 3.687 4 O -0.434 6.434 5 N -0.357 5.357 6 C 0.132 3.868 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.524 5.524 11 Si 0.729 3.271 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.129 4.129 16 C -0.169 4.169 17 C -0.067 4.067 18 N -0.316 5.316 19 C -0.055 4.055 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.218 0.782 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.097 0.903 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.187 -14.696 1.785 14.965 hybrid contribution -0.757 -0.512 -1.488 1.746 sum -2.943 -15.208 0.297 15.493 Atomic orbital electron populations 1.21803 0.92904 1.02034 1.02985 1.20918 0.96199 0.94782 0.96860 1.19872 0.80334 0.86057 0.82472 1.90552 1.38877 1.77089 1.36844 1.46332 1.51864 1.14366 1.23091 1.19026 0.95262 0.75485 0.97045 1.21245 1.32904 0.96739 1.06933 0.92080 1.24943 0.94915 0.97256 0.96923 1.69980 1.35815 1.11139 1.35446 0.86447 0.78547 0.79382 0.82703 1.20537 1.21049 1.19807 1.21355 0.96245 0.98532 0.96727 1.21818 0.95696 1.03894 0.95475 1.21924 0.99442 0.93909 0.91475 1.60103 1.07580 1.58719 1.05233 1.21900 0.88199 0.98098 0.97343 0.92126 0.91809 0.91815 0.78196 0.95887 0.95610 0.92558 0.92605 0.91231 0.92336 0.88040 0.96014 0.91115 0.83977 0.90347 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.38 37.16 0.31 -1.44 16 2 C -0.08 -1.27 0.63 -155.58 -0.10 -1.37 16 3 C 0.53 10.92 5.82 -10.99 -0.06 10.85 16 4 O -0.55 -13.59 13.80 5.56 0.08 -13.52 16 5 N -0.71 -15.49 5.33 -61.48 -0.33 -15.82 16 6 C 0.25 6.90 5.43 -5.19 -0.03 6.87 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 11 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 C -0.09 -1.30 4.43 -26.60 -0.12 -1.41 16 16 C -0.13 -1.95 5.77 -26.64 -0.15 -2.10 16 17 C 0.06 0.80 6.55 -3.83 -0.03 0.78 16 18 N -0.69 -9.68 6.45 -113.82 -0.73 -10.42 16 19 C 0.07 0.99 5.18 -3.84 -0.02 0.97 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.06 0.77 7.58 -51.93 -0.39 0.38 16 23 H 0.39 7.38 7.16 -40.82 -0.29 7.09 16 24 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.06 8.04 -51.93 -0.42 0.65 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.94 5.75 -51.93 -0.30 1.64 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.34 4.02 8.90 -39.29 -0.35 3.68 16 34 H 0.08 1.02 7.55 -51.93 -0.39 0.63 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 280.82 15.07 4.23 4.23 Total: -1.00 -32.35 280.82 -7.13 -39.48 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.48 Total: 6.22 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.61 Total: -0.47 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.33 Total: -52.11 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.35 -7.13 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062853363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.399 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds