Wall clock time and date at job start Mon Mar 30 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.53430 * 2 1 4 4 O 1.21277 * 120.00247 * 119.90196 * 3 2 1 5 5 N 1.34775 * 119.99763 * 299.89592 * 3 2 1 6 6 C 1.46498 * 120.00010 * 180.02562 * 5 3 2 7 7 C 1.50704 * 109.46965 * 180.02562 * 6 5 3 8 8 H 1.07995 * 119.99991 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99824 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99952 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00104 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47052 * 89.99643 * 11 9 7 13 13 H 1.48501 * 109.47478 * 210.00065 * 11 9 7 14 14 H 1.48501 * 109.47331 * 329.99965 * 11 9 7 15 15 C 1.53123 * 109.49034 * 120.09816 * 2 1 3 16 16 C 1.53127 * 109.15019 * 177.60705 * 15 2 1 17 17 C 1.53042 * 109.27596 * 302.34079 * 16 15 2 18 18 N 1.46843 * 109.52278 * 59.17923 * 17 16 15 19 19 C 1.46847 * 111.20124 * 298.25596 * 18 17 16 20 20 H 1.09004 * 109.47174 * 180.09886 * 1 2 3 21 21 H 1.09000 * 109.47475 * 300.10496 * 1 2 3 22 22 H 1.08997 * 109.47033 * 60.10400 * 1 2 3 23 23 H 0.97002 * 119.99704 * 0.02562 * 5 3 2 24 24 H 1.08999 * 109.47220 * 299.99673 * 6 5 3 25 25 H 1.08992 * 109.47089 * 59.99724 * 6 5 3 26 26 H 0.97002 * 120.00413 * 179.97438 * 10 9 7 27 27 H 1.09003 * 109.53012 * 57.70277 * 15 2 1 28 28 H 1.08997 * 109.57453 * 297.53555 * 15 2 1 29 29 H 1.08997 * 109.49981 * 182.39822 * 16 15 2 30 30 H 1.08999 * 109.50124 * 62.28085 * 16 15 2 31 31 H 1.08993 * 109.46299 * 299.16259 * 17 16 15 32 32 H 1.09004 * 109.45702 * 179.19362 * 17 16 15 33 33 H 1.00902 * 110.99874 * 174.15812 * 18 17 16 34 34 H 1.09002 * 109.46481 * 181.76055 * 19 18 17 35 35 H 1.08994 * 109.46283 * 301.73908 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0339 1.4203 0.0000 4 8 2.7301 1.8167 0.9105 5 7 1.7109 2.2498 -1.0119 6 6 2.2012 3.6303 -1.0122 7 6 1.7011 4.3407 -2.2437 8 1 1.0805 3.8162 -2.9550 9 6 2.0358 5.6603 -2.4620 10 7 2.7911 6.2992 -1.5955 11 14 1.4166 6.5406 -3.9887 12 1 0.1085 7.1795 -3.6953 13 1 2.3964 7.5811 -4.3919 14 1 1.2524 5.5611 -5.0927 15 6 2.0409 -0.7239 1.2489 16 6 3.5709 -0.7718 1.2111 17 6 4.0229 -1.4728 -0.0721 18 7 3.5093 -0.7420 -1.2376 19 6 2.0409 -0.7235 -1.2480 20 1 -0.3634 -1.0277 0.0018 21 1 -0.3634 0.5154 0.8890 22 1 -0.3633 0.5122 -0.8909 23 1 1.1538 1.9328 -1.7400 24 1 1.8373 4.1454 -0.1232 25 1 3.2911 3.6288 -1.0106 26 1 3.0270 7.2274 -1.7492 27 1 1.6450 -1.7393 1.2690 28 1 1.7152 -0.1881 2.1404 29 1 3.9392 -1.3232 2.0762 30 1 3.9674 0.2434 1.2301 31 1 3.6376 -2.4923 -0.0840 32 1 5.1121 -1.4958 -0.1089 33 1 3.8721 -1.1292 -2.0958 34 1 1.6905 -0.2024 -2.1389 35 1 1.6649 -1.7465 -1.2541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062853363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:28 Heat of formation + Delta-G solvation = -79.401082 kcal Electronic energy + Delta-G solvation = -16363.730935 eV Core-core repulsion = 13780.604207 eV Total energy + Delta-G solvation = -2583.126728 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.43231 -38.43491 -36.10523 -34.63819 -34.01367 -32.37706 -29.23482 -27.51682 -25.32330 -24.67750 -23.35956 -21.83481 -20.44375 -18.45949 -17.61207 -17.03246 -16.93624 -16.08084 -15.96605 -15.37182 -15.09630 -14.76753 -14.59016 -14.12730 -13.99995 -13.66985 -13.21568 -13.04112 -12.84046 -12.83119 -12.73468 -12.67130 -12.20752 -11.73972 -11.47912 -11.31968 -11.23470 -10.77541 -10.38880 -9.69340 -9.26267 -8.27410 -6.44136 1.42694 1.45771 1.56919 1.97055 2.34845 2.68196 3.07065 3.33439 3.65208 3.82737 3.96540 4.22512 4.27055 4.40810 4.60443 4.66027 4.70394 4.79322 4.81734 4.96133 4.98233 5.06133 5.17946 5.26197 5.28921 5.34829 5.50911 5.62632 5.78664 5.90165 6.13322 6.57809 6.67946 7.04328 7.25726 7.64767 8.85035 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.006623 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.113981 B = 4226.643121 C = 4277.045905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C 0.520 3.480 4 O -0.600 6.600 5 N -0.705 5.705 6 C 0.273 3.727 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.002 3.998 10 N -0.933 5.933 11 Si 0.986 3.014 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.255 1.255 15 C -0.090 4.090 16 C -0.135 4.135 17 C 0.066 3.934 18 N -0.716 5.716 19 C 0.076 3.924 20 H 0.099 0.901 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.402 0.598 24 H -0.019 1.019 25 H -0.020 1.020 26 H 0.268 0.732 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.355 0.645 34 H 0.080 0.920 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 -18.129 -1.139 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C 0.308 3.692 4 O -0.482 6.482 5 N -0.354 5.354 6 C 0.150 3.850 7 C -0.592 4.592 8 H 0.101 0.899 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.808 3.192 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.179 1.179 15 C -0.128 4.128 16 C -0.172 4.172 17 C -0.063 4.063 18 N -0.349 5.349 19 C -0.053 4.053 20 H 0.118 0.882 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.237 0.763 24 H -0.001 1.001 25 H -0.002 1.002 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.175 0.825 34 H 0.098 0.902 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.961 -17.060 -0.179 17.515 hybrid contribution -0.147 0.192 -0.783 0.820 sum -4.108 -16.868 -0.962 17.387 Atomic orbital electron populations 1.21835 0.90471 1.04487 1.02651 1.20980 0.98014 0.90251 0.98752 1.21083 0.79004 0.88255 0.80879 1.90543 1.40709 1.78525 1.38439 1.46082 1.52319 1.12511 1.24458 1.18413 0.92421 0.78434 0.95781 1.21621 1.33147 0.97321 1.07082 0.89947 1.26094 0.94726 0.98216 1.00666 1.70153 1.37282 1.11691 1.38005 0.85149 0.77918 0.77981 0.78113 1.19491 1.20956 1.17850 1.21408 0.95786 1.00215 0.95412 1.21781 0.96315 1.01403 0.97751 1.21886 0.99686 0.94837 0.89882 1.60050 1.08501 1.60050 1.06311 1.21939 0.87771 0.99735 0.95895 0.88211 0.93038 0.91406 0.76293 1.00075 1.00218 0.92320 0.88566 0.93203 0.90482 0.93276 0.92896 0.91002 0.82487 0.90182 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.38 71.98 0.60 -2.43 16 2 C -0.08 -2.18 0.63 -52.87 -0.03 -2.21 16 3 C 0.52 22.08 5.82 87.66 0.51 22.59 16 4 O -0.60 -31.35 13.80 -3.02 -0.04 -31.39 16 5 N -0.70 -31.59 5.33 -466.80 -2.49 -34.08 16 6 C 0.27 15.72 5.43 85.63 0.46 16.18 16 7 C -0.55 -31.15 9.28 25.60 0.24 -30.91 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.00 0.13 5.46 84.65 0.46 0.59 16 10 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 11 Si 0.99 43.18 29.54 68.60 2.03 45.20 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 14 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 15 C -0.09 -2.42 4.43 30.68 0.14 -2.28 16 16 C -0.13 -3.92 5.77 30.65 0.18 -3.74 16 17 C 0.07 1.57 6.55 86.33 0.57 2.13 16 18 N -0.72 -18.88 6.45 -514.02 -3.32 -22.19 16 19 C 0.08 1.77 5.18 86.32 0.45 2.21 16 20 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.07 1.45 7.58 -2.39 -0.02 1.43 16 23 H 0.40 15.17 7.16 -92.71 -0.66 14.51 16 24 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 25 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.51 8.04 -2.39 -0.02 1.49 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.97 5.75 -2.39 -0.01 1.95 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 33 H 0.36 7.56 8.90 -89.69 -0.80 6.76 16 34 H 0.08 1.83 7.55 -2.39 -0.02 1.82 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.08 280.82 -0.34 -75.43 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.38 Total: 22.49 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 3.57 Total: 2.13 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -5.52 Total: -113.86 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.04 Total: -31.39 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.08 -0.34 -75.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062853363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.974 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds