Wall clock time and date at job start Mon Mar 30 2020 03:06:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50700 * 109.87967 * 2 1
4 4 O 1.21283 * 119.99803 * 95.41789 * 3 2 1
5 5 N 1.34777 * 119.99675 * 275.69665 * 3 2 1
6 6 C 1.46497 * 119.99525 * 179.72583 * 5 3 2
7 7 C 1.52999 * 109.46992 * 179.97438 * 6 5 3
8 8 C 1.50702 * 109.47525 * 180.02562 * 7 6 5
9 9 H 1.08002 * 119.99441 * 359.97438 * 8 7 6
10 10 C 1.37875 * 120.00641 * 180.02562 * 8 7 6
11 11 N 1.31514 * 119.99481 * 359.97438 * 10 8 7
12 12 Si 1.86796 * 120.00577 * 180.02562 * 10 8 7
13 13 H 1.48502 * 109.47293 * 59.99047 * 12 10 8
14 14 H 1.48497 * 109.47533 * 179.97438 * 12 10 8
15 15 H 1.48504 * 109.46772 * 299.99795 * 12 10 8
16 16 C 1.54319 * 110.01925 * 121.11582 * 2 1 3
17 17 C 1.55142 * 103.01900 * 97.19970 * 16 2 1
18 18 C 1.54905 * 101.65157 * 35.65199 * 17 16 2
19 19 N 1.47445 * 109.88880 * 238.96533 * 2 1 3
20 20 H 1.09006 * 109.46745 * 59.30310 * 1 2 3
21 21 H 1.09003 * 109.47043 * 179.29508 * 1 2 3
22 22 H 1.08989 * 109.47238 * 299.30477 * 1 2 3
23 23 H 0.97000 * 119.99894 * 359.71837 * 5 3 2
24 24 H 1.08995 * 109.47421 * 299.99467 * 6 5 3
25 25 H 1.09001 * 109.47621 * 60.00103 * 6 5 3
26 26 H 1.09009 * 109.47378 * 299.99899 * 7 6 5
27 27 H 1.08993 * 109.47209 * 59.99808 * 7 6 5
28 28 H 0.97000 * 120.00289 * 180.02562 * 11 10 8
29 29 H 1.09005 * 110.70400 * 215.58202 * 16 2 1
30 30 H 1.09001 * 110.70851 * 338.81663 * 16 2 1
31 31 H 1.09003 * 110.98745 * 277.56183 * 17 16 2
32 32 H 1.09000 * 111.02577 * 153.75685 * 17 16 2
33 33 H 1.09003 * 110.37112 * 204.09939 * 18 17 16
34 34 H 1.08999 * 110.37410 * 81.76309 * 18 17 16
35 35 H 1.00895 * 110.99910 * 1.70974 * 19 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0425 1.4172 0.0000
4 8 2.3420 1.9537 1.0457
5 7 2.1627 2.0903 -1.1615
6 6 2.6551 3.4700 -1.1608
7 6 2.6958 3.9976 -2.5964
8 6 3.2030 5.4167 -2.5960
9 1 3.4693 5.8946 -1.6647
10 6 3.3261 6.1053 -3.7841
11 7 3.0013 5.5235 -4.9179
12 14 3.9554 7.8641 -3.7836
13 1 5.3223 7.9005 -3.2044
14 1 3.9947 8.3762 -5.1769
15 1 3.0499 8.7135 -2.9688
16 6 2.0583 -0.7493 1.2413
17 6 2.3560 -2.1693 0.6920
18 6 2.8618 -1.8521 -0.7374
19 7 2.0317 -0.7148 -1.1880
20 1 -0.3633 0.5247 -0.8837
21 1 -0.3633 -1.0276 -0.0126
22 1 -0.3633 0.5029 0.8961
23 1 1.9232 1.6611 -1.9977
24 1 1.9899 4.0930 -0.5632
25 1 3.6584 3.4976 -0.7355
26 1 3.3614 3.3745 -3.1939
27 1 1.6928 3.9700 -3.0222
28 1 3.0882 6.0077 -5.7539
29 1 2.9694 -0.2818 1.6149
30 1 1.2970 -0.7892 2.0204
31 1 1.4493 -2.7736 0.6602
32 1 3.1305 -2.6617 1.2800
33 1 2.7149 -2.7118 -1.3913
34 1 3.9139 -1.5681 -0.7133
35 1 1.2693 -1.0312 -1.7683
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000070619292.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:23
Heat of formation + Delta-G solvation = -53.727992 kcal
Electronic energy + Delta-G solvation = -15759.443370 eV
Core-core repulsion = 13177.429911 eV
Total energy + Delta-G solvation = -2582.013460 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.11513 -37.60940 -34.73604 -32.77958 -31.57923 -30.23825 -29.30124 -25.97611
-24.80888 -22.47092 -21.34621 -20.63728 -19.08121 -16.97141 -16.33863 -16.21382
-15.37576 -14.67288 -14.59363 -14.40365 -13.67992 -13.31834 -13.17986 -13.00759
-12.28970 -12.24733 -12.10018 -11.86439 -11.37151 -11.15493 -11.12894 -10.96467
-10.81300 -10.60869 -10.22793 -9.76432 -9.44114 -9.20115 -8.54915 -8.43699
-8.21216 -6.03868 -4.06482 3.09248 3.34533 3.38044 3.41349 3.83053
3.95428 4.45543 4.57411 4.71438 4.80582 4.97773 5.18949 5.25961
5.32846 5.44545 5.47984 5.64050 5.74647 5.81263 5.91228 5.93430
6.16983 6.43950 6.45036 6.61577 6.83620 7.11679 7.20838 7.60066
7.70679 7.94913 8.22991 8.35564 8.83812 8.99719 9.57818 11.07725
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.052116 B = 0.005130 C = 0.004974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 537.133928 B = 5456.613636 C = 5627.542190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.083 3.917
3 C 0.526 3.474
4 O -0.561 6.561
5 N -0.705 5.705
6 C 0.120 3.880
7 C 0.014 3.986
8 C -0.521 4.521
9 H 0.058 0.942
10 C 0.059 3.941
11 N -0.895 5.895
12 Si 0.897 3.103
13 H -0.276 1.276
14 H -0.287 1.287
15 H -0.276 1.276
16 C -0.116 4.116
17 C -0.154 4.154
18 C 0.049 3.951
19 N -0.673 5.673
20 H 0.068 0.932
21 H 0.064 0.936
22 H 0.070 0.930
23 H 0.402 0.598
24 H 0.053 0.947
25 H 0.054 0.946
26 H 0.023 0.977
27 H 0.021 0.979
28 H 0.262 0.738
29 H 0.084 0.916
30 H 0.076 0.924
31 H 0.067 0.933
32 H 0.076 0.924
33 H 0.070 0.930
34 H 0.079 0.921
35 H 0.344 0.656
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.407 -15.908 7.284 18.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.011 4.011
3 C 0.310 3.690
4 O -0.439 6.439
5 N -0.353 5.353
6 C -0.002 4.002
7 C -0.024 4.024
8 C -0.560 4.560
9 H 0.076 0.924
10 C -0.142 4.142
11 N -0.533 5.533
12 Si 0.724 3.276
13 H -0.201 1.201
14 H -0.213 1.213
15 H -0.202 1.202
16 C -0.155 4.155
17 C -0.193 4.193
18 C -0.080 4.080
19 N -0.304 5.304
20 H 0.087 0.913
21 H 0.083 0.917
22 H 0.089 0.911
23 H 0.237 0.763
24 H 0.072 0.928
25 H 0.072 0.928
26 H 0.041 0.959
27 H 0.040 0.960
28 H 0.071 0.929
29 H 0.102 0.898
30 H 0.095 0.905
31 H 0.085 0.915
32 H 0.095 0.905
33 H 0.088 0.912
34 H 0.097 0.903
35 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -3.648 -15.000 7.667 17.237
hybrid contribution -0.454 0.161 -0.247 0.541
sum -4.102 -14.840 7.420 17.091
Atomic orbital electron populations
1.22206 0.92944 1.02533 1.03753 1.21814 0.95122 0.92968 0.91199
1.20180 0.77810 0.86997 0.84051 1.90653 1.51432 1.69891 1.31972
1.46187 1.64844 1.15455 1.08852 1.21701 0.97943 0.79299 1.01294
1.19303 0.97784 0.96253 0.89033 1.21036 1.44052 0.97731 0.93161
0.92384 1.24988 0.95369 0.98387 0.95505 1.69951 1.48279 1.37325
0.97789 0.86584 0.79526 0.84541 0.76937 1.20141 1.21261 1.20152
1.22673 1.02648 0.94036 0.96098 1.23175 1.01402 0.97069 0.97667
1.22880 0.98856 0.92009 0.94228 1.61633 1.25159 1.26185 1.17444
0.91260 0.91674 0.91060 0.76321 0.92830 0.92808 0.95864 0.96050
0.92852 0.89779 0.90502 0.91451 0.90526 0.91180 0.90252 0.83861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.66 8.20 37.16 0.30 -1.36 16
2 C 0.08 1.08 1.15 -131.76 -0.15 0.93 16
3 C 0.53 9.53 6.67 -10.98 -0.07 9.45 16
4 O -0.56 -12.13 15.93 5.55 0.09 -12.04 16
5 N -0.70 -13.34 5.46 -60.30 -0.33 -13.67 16
6 C 0.12 2.70 5.61 -4.04 -0.02 2.68 16
7 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16
8 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16
9 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16
10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
11 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16
12 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16
13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
16 C -0.12 -1.38 5.67 -24.91 -0.14 -1.52 16
17 C -0.15 -1.38 7.08 -24.59 -0.17 -1.56 16
18 C 0.05 0.48 7.57 -2.30 -0.02 0.47 16
19 N -0.67 -7.74 6.31 -98.29 -0.62 -8.36 16
20 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
22 H 0.07 0.80 8.14 -51.94 -0.42 0.38 16
23 H 0.40 6.95 7.90 -40.82 -0.32 6.63 16
24 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16
25 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16
26 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16
27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16
28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
29 H 0.08 1.20 7.37 -51.93 -0.38 0.82 16
30 H 0.08 0.84 7.83 -51.93 -0.41 0.43 16
31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
35 H 0.34 3.22 8.22 -39.29 -0.32 2.90 16
LS Contribution 290.38 15.07 4.38 4.38
Total: -1.00 -32.00 290.38 -7.22 -39.22
By element:
Atomic # 1 Polarization: 9.48 SS G_CDS: -5.63 Total: 3.85 kcal
Atomic # 6 Polarization: -3.41 SS G_CDS: -0.83 Total: -4.24 kcal
Atomic # 7 Polarization: -47.65 SS G_CDS: -0.21 Total: -47.86 kcal
Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -32.00 -7.22 -39.22 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070619292.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.507 kcal
(2) G-P(sol) polarization free energy of solvation -31.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.504 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.728 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds