Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.87967 * 2 1 4 4 O 1.21283 * 119.99803 * 95.41789 * 3 2 1 5 5 N 1.34777 * 119.99675 * 275.69665 * 3 2 1 6 6 C 1.46497 * 119.99525 * 179.72583 * 5 3 2 7 7 C 1.52999 * 109.46992 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.47525 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99441 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00641 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99481 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00577 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47293 * 59.99047 * 12 10 8 14 14 H 1.48497 * 109.47533 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46772 * 299.99795 * 12 10 8 16 16 C 1.54319 * 110.01925 * 121.11582 * 2 1 3 17 17 C 1.55142 * 103.01900 * 97.19970 * 16 2 1 18 18 C 1.54905 * 101.65157 * 35.65199 * 17 16 2 19 19 N 1.47445 * 109.88880 * 238.96533 * 2 1 3 20 20 H 1.09006 * 109.46745 * 59.30310 * 1 2 3 21 21 H 1.09003 * 109.47043 * 179.29508 * 1 2 3 22 22 H 1.08989 * 109.47238 * 299.30477 * 1 2 3 23 23 H 0.97000 * 119.99894 * 359.71837 * 5 3 2 24 24 H 1.08995 * 109.47421 * 299.99467 * 6 5 3 25 25 H 1.09001 * 109.47621 * 60.00103 * 6 5 3 26 26 H 1.09009 * 109.47378 * 299.99899 * 7 6 5 27 27 H 1.08993 * 109.47209 * 59.99808 * 7 6 5 28 28 H 0.97000 * 120.00289 * 180.02562 * 11 10 8 29 29 H 1.09005 * 110.70400 * 215.58202 * 16 2 1 30 30 H 1.09001 * 110.70851 * 338.81663 * 16 2 1 31 31 H 1.09003 * 110.98745 * 277.56183 * 17 16 2 32 32 H 1.09000 * 111.02577 * 153.75685 * 17 16 2 33 33 H 1.09003 * 110.37112 * 204.09939 * 18 17 16 34 34 H 1.08999 * 110.37410 * 81.76309 * 18 17 16 35 35 H 1.00895 * 110.99910 * 1.70974 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0425 1.4172 0.0000 4 8 2.3420 1.9537 1.0457 5 7 2.1627 2.0903 -1.1615 6 6 2.6551 3.4700 -1.1608 7 6 2.6958 3.9976 -2.5964 8 6 3.2030 5.4167 -2.5960 9 1 3.4693 5.8946 -1.6647 10 6 3.3261 6.1053 -3.7841 11 7 3.0013 5.5235 -4.9179 12 14 3.9554 7.8641 -3.7836 13 1 5.3223 7.9005 -3.2044 14 1 3.9947 8.3762 -5.1769 15 1 3.0499 8.7135 -2.9688 16 6 2.0583 -0.7493 1.2413 17 6 2.3560 -2.1693 0.6920 18 6 2.8618 -1.8521 -0.7374 19 7 2.0317 -0.7148 -1.1880 20 1 -0.3633 0.5247 -0.8837 21 1 -0.3633 -1.0276 -0.0126 22 1 -0.3633 0.5029 0.8961 23 1 1.9232 1.6611 -1.9977 24 1 1.9899 4.0930 -0.5632 25 1 3.6584 3.4976 -0.7355 26 1 3.3614 3.3745 -3.1939 27 1 1.6928 3.9700 -3.0222 28 1 3.0882 6.0077 -5.7539 29 1 2.9694 -0.2818 1.6149 30 1 1.2970 -0.7892 2.0204 31 1 1.4493 -2.7736 0.6602 32 1 3.1305 -2.6617 1.2800 33 1 2.7149 -2.7118 -1.3913 34 1 3.9139 -1.5681 -0.7133 35 1 1.2693 -1.0312 -1.7683 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070619292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = -53.727992 kcal Electronic energy + Delta-G solvation = -15759.443370 eV Core-core repulsion = 13177.429911 eV Total energy + Delta-G solvation = -2582.013460 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11513 -37.60940 -34.73604 -32.77958 -31.57923 -30.23825 -29.30124 -25.97611 -24.80888 -22.47092 -21.34621 -20.63728 -19.08121 -16.97141 -16.33863 -16.21382 -15.37576 -14.67288 -14.59363 -14.40365 -13.67992 -13.31834 -13.17986 -13.00759 -12.28970 -12.24733 -12.10018 -11.86439 -11.37151 -11.15493 -11.12894 -10.96467 -10.81300 -10.60869 -10.22793 -9.76432 -9.44114 -9.20115 -8.54915 -8.43699 -8.21216 -6.03868 -4.06482 3.09248 3.34533 3.38044 3.41349 3.83053 3.95428 4.45543 4.57411 4.71438 4.80582 4.97773 5.18949 5.25961 5.32846 5.44545 5.47984 5.64050 5.74647 5.81263 5.91228 5.93430 6.16983 6.43950 6.45036 6.61577 6.83620 7.11679 7.20838 7.60066 7.70679 7.94913 8.22991 8.35564 8.83812 8.99719 9.57818 11.07725 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052116 B = 0.005130 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.133928 B = 5456.613636 C = 5627.542190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.083 3.917 3 C 0.526 3.474 4 O -0.561 6.561 5 N -0.705 5.705 6 C 0.120 3.880 7 C 0.014 3.986 8 C -0.521 4.521 9 H 0.058 0.942 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.116 4.116 17 C -0.154 4.154 18 C 0.049 3.951 19 N -0.673 5.673 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.402 0.598 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 -15.908 7.284 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.011 4.011 3 C 0.310 3.690 4 O -0.439 6.439 5 N -0.353 5.353 6 C -0.002 4.002 7 C -0.024 4.024 8 C -0.560 4.560 9 H 0.076 0.924 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.155 4.155 17 C -0.193 4.193 18 C -0.080 4.080 19 N -0.304 5.304 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.237 0.763 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.648 -15.000 7.667 17.237 hybrid contribution -0.454 0.161 -0.247 0.541 sum -4.102 -14.840 7.420 17.091 Atomic orbital electron populations 1.22206 0.92944 1.02533 1.03753 1.21814 0.95122 0.92968 0.91199 1.20180 0.77810 0.86997 0.84051 1.90653 1.51432 1.69891 1.31972 1.46187 1.64844 1.15455 1.08852 1.21701 0.97943 0.79299 1.01294 1.19303 0.97784 0.96253 0.89033 1.21036 1.44052 0.97731 0.93161 0.92384 1.24988 0.95369 0.98387 0.95505 1.69951 1.48279 1.37325 0.97789 0.86584 0.79526 0.84541 0.76937 1.20141 1.21261 1.20152 1.22673 1.02648 0.94036 0.96098 1.23175 1.01402 0.97069 0.97667 1.22880 0.98856 0.92009 0.94228 1.61633 1.25159 1.26185 1.17444 0.91260 0.91674 0.91060 0.76321 0.92830 0.92808 0.95864 0.96050 0.92852 0.89779 0.90502 0.91451 0.90526 0.91180 0.90252 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.20 37.16 0.30 -1.36 16 2 C 0.08 1.08 1.15 -131.76 -0.15 0.93 16 3 C 0.53 9.53 6.67 -10.98 -0.07 9.45 16 4 O -0.56 -12.13 15.93 5.55 0.09 -12.04 16 5 N -0.70 -13.34 5.46 -60.30 -0.33 -13.67 16 6 C 0.12 2.70 5.61 -4.04 -0.02 2.68 16 7 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 8 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 9 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 12 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C -0.12 -1.38 5.67 -24.91 -0.14 -1.52 16 17 C -0.15 -1.38 7.08 -24.59 -0.17 -1.56 16 18 C 0.05 0.48 7.57 -2.30 -0.02 0.47 16 19 N -0.67 -7.74 6.31 -98.29 -0.62 -8.36 16 20 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.80 8.14 -51.94 -0.42 0.38 16 23 H 0.40 6.95 7.90 -40.82 -0.32 6.63 16 24 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.08 1.20 7.37 -51.93 -0.38 0.82 16 30 H 0.08 0.84 7.83 -51.93 -0.41 0.43 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.34 3.22 8.22 -39.29 -0.32 2.90 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -32.00 290.38 -7.22 -39.22 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.63 Total: 3.85 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.83 Total: -4.24 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.21 Total: -47.86 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.00 -7.22 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070619292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.507 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds