Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.87967 * 2 1 4 4 O 1.21283 * 119.99803 * 95.41789 * 3 2 1 5 5 N 1.34777 * 119.99675 * 275.69665 * 3 2 1 6 6 C 1.46497 * 119.99525 * 179.72583 * 5 3 2 7 7 C 1.52999 * 109.46992 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.47525 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99441 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00641 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99481 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00577 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47293 * 59.99047 * 12 10 8 14 14 H 1.48497 * 109.47533 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46772 * 299.99795 * 12 10 8 16 16 C 1.54319 * 110.01925 * 121.11582 * 2 1 3 17 17 C 1.55142 * 103.01900 * 97.19970 * 16 2 1 18 18 C 1.54905 * 101.65157 * 35.65199 * 17 16 2 19 19 N 1.47445 * 109.88880 * 238.96533 * 2 1 3 20 20 H 1.09006 * 109.46745 * 59.30310 * 1 2 3 21 21 H 1.09003 * 109.47043 * 179.29508 * 1 2 3 22 22 H 1.08989 * 109.47238 * 299.30477 * 1 2 3 23 23 H 0.97000 * 119.99894 * 359.71837 * 5 3 2 24 24 H 1.08995 * 109.47421 * 299.99467 * 6 5 3 25 25 H 1.09001 * 109.47621 * 60.00103 * 6 5 3 26 26 H 1.09009 * 109.47378 * 299.99899 * 7 6 5 27 27 H 1.08993 * 109.47209 * 59.99808 * 7 6 5 28 28 H 0.97000 * 120.00289 * 180.02562 * 11 10 8 29 29 H 1.09005 * 110.70400 * 215.58202 * 16 2 1 30 30 H 1.09001 * 110.70851 * 338.81663 * 16 2 1 31 31 H 1.09003 * 110.98745 * 277.56183 * 17 16 2 32 32 H 1.09000 * 111.02577 * 153.75685 * 17 16 2 33 33 H 1.09003 * 110.37112 * 204.09939 * 18 17 16 34 34 H 1.08999 * 110.37410 * 81.76309 * 18 17 16 35 35 H 1.00895 * 110.99910 * 1.70974 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0425 1.4172 0.0000 4 8 2.3420 1.9537 1.0457 5 7 2.1627 2.0903 -1.1615 6 6 2.6551 3.4700 -1.1608 7 6 2.6958 3.9976 -2.5964 8 6 3.2030 5.4167 -2.5960 9 1 3.4693 5.8946 -1.6647 10 6 3.3261 6.1053 -3.7841 11 7 3.0013 5.5235 -4.9179 12 14 3.9554 7.8641 -3.7836 13 1 5.3223 7.9005 -3.2044 14 1 3.9947 8.3762 -5.1769 15 1 3.0499 8.7135 -2.9688 16 6 2.0583 -0.7493 1.2413 17 6 2.3560 -2.1693 0.6920 18 6 2.8618 -1.8521 -0.7374 19 7 2.0317 -0.7148 -1.1880 20 1 -0.3633 0.5247 -0.8837 21 1 -0.3633 -1.0276 -0.0126 22 1 -0.3633 0.5029 0.8961 23 1 1.9232 1.6611 -1.9977 24 1 1.9899 4.0930 -0.5632 25 1 3.6584 3.4976 -0.7355 26 1 3.3614 3.3745 -3.1939 27 1 1.6928 3.9700 -3.0222 28 1 3.0882 6.0077 -5.7539 29 1 2.9694 -0.2818 1.6149 30 1 1.2970 -0.7892 2.0204 31 1 1.4493 -2.7736 0.6602 32 1 3.1305 -2.6617 1.2800 33 1 2.7149 -2.7118 -1.3913 34 1 3.9139 -1.5681 -0.7133 35 1 1.2693 -1.0312 -1.7683 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070619292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = -77.690177 kcal Electronic energy + Delta-G solvation = -15760.482449 eV Core-core repulsion = 13177.429911 eV Total energy + Delta-G solvation = -2583.052538 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34901 -38.84814 -36.56522 -34.79716 -32.63074 -31.38090 -30.90807 -27.14433 -26.50489 -23.88255 -22.72823 -21.98551 -20.42208 -18.55784 -18.08488 -17.20364 -16.79568 -16.48775 -16.18725 -15.78819 -14.96303 -14.75871 -14.33401 -14.29513 -13.88964 -13.36915 -13.23618 -13.05425 -12.90320 -12.77826 -12.54391 -12.30658 -12.19856 -11.94064 -11.67238 -11.64859 -11.47602 -10.82608 -10.59752 -9.94357 -9.53983 -8.23475 -6.34665 1.41451 1.44260 1.52319 1.67183 2.31941 2.49410 3.04393 3.10668 3.63367 3.77965 3.89718 4.15173 4.21099 4.44804 4.48221 4.50154 4.62865 4.72546 4.82082 4.84862 4.92535 4.98166 5.07971 5.12174 5.32683 5.34209 5.52348 5.57534 5.72500 5.80066 6.16477 6.46777 6.73151 6.78024 7.34531 7.34958 8.88287 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052116 B = 0.005130 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.133928 B = 5456.613636 C = 5627.542190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 C 0.518 3.482 4 O -0.600 6.600 5 N -0.703 5.703 6 C 0.139 3.861 7 C 0.026 3.974 8 C -0.550 4.550 9 H 0.057 0.943 10 C 0.008 3.992 11 N -0.926 5.926 12 Si 0.966 3.034 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.268 1.268 16 C -0.120 4.120 17 C -0.140 4.140 18 C 0.047 3.953 19 N -0.687 5.687 20 H 0.067 0.933 21 H 0.099 0.901 22 H 0.063 0.937 23 H 0.411 0.589 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.006 0.994 27 H 0.008 0.992 28 H 0.266 0.734 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -17.061 7.301 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.003 4.003 3 C 0.305 3.695 4 O -0.481 6.481 5 N -0.352 5.352 6 C 0.015 3.985 7 C -0.011 4.011 8 C -0.588 4.588 9 H 0.076 0.924 10 C -0.191 4.191 11 N -0.565 5.565 12 Si 0.791 3.209 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.193 1.193 16 C -0.159 4.159 17 C -0.178 4.178 18 C -0.082 4.082 19 N -0.320 5.320 20 H 0.086 0.914 21 H 0.118 0.882 22 H 0.082 0.918 23 H 0.247 0.753 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.256 -16.191 7.673 18.416 hybrid contribution -0.255 0.492 -0.259 0.612 sum -4.512 -15.699 7.414 17.938 Atomic orbital electron populations 1.22200 0.90686 1.04671 1.03361 1.21700 0.96577 0.89523 0.92527 1.21265 0.76519 0.89001 0.82757 1.90623 1.52935 1.71361 1.33216 1.46063 1.65024 1.14137 1.09979 1.21213 0.97129 0.81366 0.98836 1.19096 0.96266 0.95338 0.90447 1.21437 1.44734 0.99119 0.93517 0.92449 1.25880 0.95273 1.02939 0.94969 1.70058 1.48882 1.39169 0.98429 0.85482 0.79113 0.78970 0.77375 1.19420 1.20373 1.19280 1.22691 1.01505 0.95716 0.95967 1.23138 1.02807 0.95244 0.96650 1.22933 0.97525 0.92173 0.95523 1.61441 1.26050 1.27328 1.17158 0.91355 0.88228 0.91820 0.75273 0.93709 0.94239 0.97610 0.97339 0.92484 0.92937 0.89400 0.88946 0.89495 0.88346 0.92160 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.20 71.98 0.59 -2.28 16 2 C 0.09 2.26 1.15 3.13 0.00 2.26 16 3 C 0.52 18.97 6.67 87.66 0.58 19.55 16 4 O -0.60 -26.69 15.93 -3.04 -0.05 -26.73 16 5 N -0.70 -27.06 5.46 -463.07 -2.53 -29.59 16 6 C 0.14 6.43 5.61 86.38 0.48 6.92 16 7 C 0.03 1.38 5.09 29.85 0.15 1.53 16 8 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 9 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 10 C 0.01 0.47 5.46 84.65 0.46 0.93 16 11 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 12 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 C -0.12 -2.71 5.67 31.78 0.18 -2.53 16 17 C -0.14 -2.09 7.08 31.98 0.23 -1.86 16 18 C 0.05 0.81 7.57 86.77 0.66 1.46 16 19 N -0.69 -14.48 6.31 -464.87 -2.93 -17.41 16 20 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 21 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.41 14.30 7.90 -92.71 -0.73 13.57 16 24 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.05 1.52 7.37 -2.38 -0.02 1.50 16 30 H 0.09 1.76 7.83 -2.39 -0.02 1.74 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.36 5.69 8.22 -89.70 -0.74 4.96 16 Total: -1.00 -69.82 290.38 -0.02 -69.84 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.39 Total: 18.05 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 3.57 Total: -5.53 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -5.18 Total: -102.05 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.82 -0.02 -69.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070619292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.851 kcal (2) G-P(sol) polarization free energy of solvation -69.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds