Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 110.01084 * 2 1 4 4 C 1.54319 * 109.88771 * 238.88780 * 2 1 3 5 5 C 1.55437 * 103.04824 * 262.87870 * 4 2 1 6 6 C 1.54912 * 101.51634 * 324.36323 * 5 4 2 7 7 N 1.47438 * 109.89110 * 121.11998 * 2 1 3 8 8 C 1.46902 * 110.99823 * 242.66450 * 7 2 1 9 9 C 1.50707 * 109.47071 * 173.32739 * 8 7 2 10 10 O 1.21297 * 119.99809 * 354.32711 * 9 8 7 11 11 N 1.34778 * 119.99852 * 174.33017 * 9 8 7 12 12 C 1.37092 * 119.99866 * 179.97438 * 11 9 8 13 13 H 1.08008 * 120.00314 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00258 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00243 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99696 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47124 * 90.00584 * 16 14 12 18 18 H 1.48501 * 109.47615 * 210.00251 * 16 14 12 19 19 H 1.48500 * 109.47287 * 330.00638 * 16 14 12 20 20 H 1.08997 * 109.46968 * 298.88041 * 1 2 3 21 21 H 1.09002 * 109.47435 * 58.88455 * 1 2 3 22 22 H 1.09009 * 109.47082 * 178.88364 * 1 2 3 23 23 H 1.09001 * 109.47340 * 176.24858 * 3 2 1 24 24 H 1.09003 * 109.47516 * 296.25674 * 3 2 1 25 25 H 1.09002 * 109.47330 * 56.25114 * 3 2 1 26 26 H 1.09000 * 110.70776 * 21.25710 * 4 2 1 27 27 H 1.08999 * 110.70964 * 144.31986 * 4 2 1 28 28 H 1.09002 * 111.10690 * 206.29936 * 5 4 2 29 29 H 1.08992 * 111.00183 * 82.38896 * 5 4 2 30 30 H 1.08996 * 110.37420 * 278.17942 * 6 5 4 31 31 H 1.09000 * 110.36877 * 155.94946 * 6 5 4 32 32 H 1.08996 * 109.46872 * 293.32153 * 8 7 2 33 33 H 1.09000 * 109.47266 * 53.32758 * 8 7 2 34 34 H 0.97001 * 120.00016 * 359.97438 * 11 9 8 35 35 H 0.97006 * 120.00311 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4376 0.0000 4 6 2.0549 -0.7498 -1.2424 5 6 2.3508 -2.1738 -0.6939 6 6 2.8586 -1.8556 0.7346 7 7 2.0316 -0.7165 1.1869 8 6 2.8029 0.1813 2.0569 9 6 3.1587 -0.5382 3.3324 10 8 2.7188 -1.6484 3.5453 11 7 3.9655 0.0518 4.2365 12 6 4.2887 -0.6025 5.3970 13 1 3.8964 -1.5908 5.5870 14 6 5.1201 0.0060 6.3293 15 7 5.4302 -0.6215 7.4415 16 14 5.7979 1.7154 6.0011 17 1 4.8605 2.7320 6.5425 18 1 7.1198 1.8592 6.6623 19 1 5.9523 1.9141 4.5375 20 1 -0.3633 0.4963 0.8998 21 1 -0.3634 0.5311 -0.8798 22 1 -0.3634 -1.0276 -0.0200 23 1 3.1414 1.4281 0.0672 24 1 1.7507 1.9346 -0.9216 25 1 1.6414 1.9744 0.8545 26 1 1.2925 -0.7877 -2.0205 27 1 2.9649 -0.2824 -1.6188 28 1 3.1241 -2.6681 -1.2820 29 1 1.4430 -2.7760 -0.6605 30 1 3.9112 -1.5738 0.7092 31 1 2.7121 -2.7145 1.3895 32 1 3.7157 0.4870 1.5456 33 1 2.2052 1.0622 2.2913 34 1 4.3175 0.9395 4.0660 35 1 6.0110 -0.1968 8.0922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075134562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = -26.106751 kcal Electronic energy + Delta-G solvation = -16258.519085 eV Core-core repulsion = 13677.703373 eV Total energy + Delta-G solvation = -2580.815713 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85226 -37.81071 -33.94999 -32.27030 -32.05148 -31.51877 -27.51160 -26.53704 -25.02061 -23.82018 -21.20227 -19.37954 -18.72677 -17.98197 -16.20808 -15.61987 -15.06123 -14.82501 -14.69962 -13.73687 -13.53287 -13.30441 -12.97632 -12.77208 -12.39304 -12.16493 -12.02977 -11.87896 -11.51401 -11.25305 -11.22730 -10.91046 -10.72565 -10.56690 -10.51882 -10.43793 -9.93762 -9.50706 -8.47173 -8.13079 -7.85593 -6.27071 -3.77950 3.04760 3.09083 3.16908 3.81385 4.00937 4.13642 4.58339 4.77066 4.84961 5.02210 5.22749 5.27852 5.34211 5.45293 5.55962 5.65724 5.69114 5.73641 5.81408 5.84804 5.94013 6.02966 6.03605 6.10767 6.16134 6.31641 6.43363 6.55866 7.30347 7.37349 7.64352 8.19600 8.65834 9.00409 9.47669 9.90428 10.86339 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042959 B = 0.006871 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.623848 B = 4074.326539 C = 4363.810312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.090 3.910 3 C -0.166 4.166 4 C -0.132 4.132 5 C -0.130 4.130 6 C 0.051 3.949 7 N -0.496 5.496 8 C 0.037 3.963 9 C 0.452 3.548 10 O -0.558 6.558 11 N -0.595 5.595 12 C -0.303 4.303 13 H 0.119 0.881 14 C 0.040 3.960 15 N -0.884 5.884 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.270 1.270 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.369 0.631 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 5.215 -16.816 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 C -0.224 4.224 4 C -0.171 4.171 5 C -0.169 4.169 6 C -0.077 4.077 7 N -0.221 5.221 8 C -0.095 4.095 9 C 0.238 3.762 10 O -0.439 6.439 11 N -0.235 5.235 12 C -0.431 4.431 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.524 5.524 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.196 1.196 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.202 0.798 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.362 4.267 -16.151 17.544 hybrid contribution 1.425 1.776 -0.455 2.323 sum -3.937 6.043 -16.606 18.104 Atomic orbital electron populations 1.21720 0.93542 1.02030 1.00943 1.21805 0.96150 0.92562 0.89433 1.22413 1.01274 0.96478 1.02201 1.22916 1.00863 0.96049 0.97243 1.22774 1.01403 0.96443 0.96232 1.23036 0.94590 0.95340 0.94694 1.63277 1.36305 1.07786 1.14686 1.22193 0.96942 0.96417 0.93903 1.19772 0.83096 0.87889 0.85447 1.90547 1.55171 1.20072 1.78144 1.42216 1.44904 1.17373 1.18984 1.19428 1.27428 1.03332 0.92937 0.86325 1.25022 0.97410 0.98243 0.95549 1.69621 1.36325 1.37861 1.08608 0.86683 0.79695 0.84692 0.78378 1.19637 1.20234 1.19593 0.92385 0.93065 0.92260 0.92303 0.92349 0.91693 0.91036 0.91658 0.91212 0.90796 0.94246 0.88880 0.93369 0.88964 0.79829 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 8.71 37.16 0.32 -1.16 16 2 C 0.09 1.16 1.16 -130.62 -0.15 1.01 16 3 C -0.17 -1.86 7.15 37.15 0.27 -1.60 16 4 C -0.13 -1.48 6.02 -24.75 -0.15 -1.62 16 5 C -0.13 -1.61 7.10 -24.43 -0.17 -1.79 16 6 C 0.05 0.83 5.66 -2.29 -0.01 0.82 16 7 N -0.50 -8.31 4.52 -217.18 -0.98 -9.29 16 8 C 0.04 0.65 4.16 -4.97 -0.02 0.63 16 9 C 0.45 10.60 7.47 -10.98 -0.08 10.52 16 10 O -0.56 -15.31 14.61 5.54 0.08 -15.23 16 11 N -0.59 -14.53 5.09 -10.96 -0.06 -14.59 16 12 C -0.30 -8.71 10.16 -14.94 -0.15 -8.86 16 13 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 15 N -0.88 -26.18 13.96 55.50 0.77 -25.41 16 16 Si 0.88 19.69 27.74 -169.99 -4.71 14.98 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 23 H 0.06 0.67 6.60 -51.93 -0.34 0.33 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.74 6.71 -51.93 -0.35 0.39 16 26 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 27 H 0.06 0.69 7.85 -51.93 -0.41 0.28 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 31 H 0.09 1.78 7.34 -51.93 -0.38 1.40 16 32 H 0.05 0.77 6.61 -51.93 -0.34 0.42 16 33 H 0.09 1.46 6.39 -51.93 -0.33 1.13 16 34 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 277.06 15.07 4.18 4.18 Total: -1.00 -32.19 277.06 -6.26 -38.45 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.29 Total: 7.93 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.25 Total: -1.02 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.26 Total: -49.29 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.23 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.19 -6.26 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075134562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.343 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds