Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 110.01084 * 2 1 4 4 C 1.54319 * 109.88771 * 238.88780 * 2 1 3 5 5 C 1.55437 * 103.04824 * 262.87870 * 4 2 1 6 6 C 1.54912 * 101.51634 * 324.36323 * 5 4 2 7 7 N 1.47438 * 109.89110 * 121.11998 * 2 1 3 8 8 C 1.46902 * 110.99823 * 242.66450 * 7 2 1 9 9 C 1.50707 * 109.47071 * 173.32739 * 8 7 2 10 10 O 1.21297 * 119.99809 * 354.32711 * 9 8 7 11 11 N 1.34778 * 119.99852 * 174.33017 * 9 8 7 12 12 C 1.37092 * 119.99866 * 179.97438 * 11 9 8 13 13 H 1.08008 * 120.00314 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00258 * 180.02562 * 12 11 9 15 15 N 1.31405 * 120.00243 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99696 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47124 * 90.00584 * 16 14 12 18 18 H 1.48501 * 109.47615 * 210.00251 * 16 14 12 19 19 H 1.48500 * 109.47287 * 330.00638 * 16 14 12 20 20 H 1.08997 * 109.46968 * 298.88041 * 1 2 3 21 21 H 1.09002 * 109.47435 * 58.88455 * 1 2 3 22 22 H 1.09009 * 109.47082 * 178.88364 * 1 2 3 23 23 H 1.09001 * 109.47340 * 176.24858 * 3 2 1 24 24 H 1.09003 * 109.47516 * 296.25674 * 3 2 1 25 25 H 1.09002 * 109.47330 * 56.25114 * 3 2 1 26 26 H 1.09000 * 110.70776 * 21.25710 * 4 2 1 27 27 H 1.08999 * 110.70964 * 144.31986 * 4 2 1 28 28 H 1.09002 * 111.10690 * 206.29936 * 5 4 2 29 29 H 1.08992 * 111.00183 * 82.38896 * 5 4 2 30 30 H 1.08996 * 110.37420 * 278.17942 * 6 5 4 31 31 H 1.09000 * 110.36877 * 155.94946 * 6 5 4 32 32 H 1.08996 * 109.46872 * 293.32153 * 8 7 2 33 33 H 1.09000 * 109.47266 * 53.32758 * 8 7 2 34 34 H 0.97001 * 120.00016 * 359.97438 * 11 9 8 35 35 H 0.97006 * 120.00311 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4376 0.0000 4 6 2.0549 -0.7498 -1.2424 5 6 2.3508 -2.1738 -0.6939 6 6 2.8586 -1.8556 0.7346 7 7 2.0316 -0.7165 1.1869 8 6 2.8029 0.1813 2.0569 9 6 3.1587 -0.5382 3.3324 10 8 2.7188 -1.6484 3.5453 11 7 3.9655 0.0518 4.2365 12 6 4.2887 -0.6025 5.3970 13 1 3.8964 -1.5908 5.5870 14 6 5.1201 0.0060 6.3293 15 7 5.4302 -0.6215 7.4415 16 14 5.7979 1.7154 6.0011 17 1 4.8605 2.7320 6.5425 18 1 7.1198 1.8592 6.6623 19 1 5.9523 1.9141 4.5375 20 1 -0.3633 0.4963 0.8998 21 1 -0.3634 0.5311 -0.8798 22 1 -0.3634 -1.0276 -0.0200 23 1 3.1414 1.4281 0.0672 24 1 1.7507 1.9346 -0.9216 25 1 1.6414 1.9744 0.8545 26 1 1.2925 -0.7877 -2.0205 27 1 2.9649 -0.2824 -1.6188 28 1 3.1241 -2.6681 -1.2820 29 1 1.4430 -2.7760 -0.6605 30 1 3.9112 -1.5738 0.7092 31 1 2.7121 -2.7145 1.3895 32 1 3.7157 0.4870 1.5456 33 1 2.2052 1.0622 2.2913 34 1 4.3175 0.9395 4.0660 35 1 6.0110 -0.1968 8.0922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075134562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = -50.658342 kcal Electronic energy + Delta-G solvation = -16259.583722 eV Core-core repulsion = 13677.703373 eV Total energy + Delta-G solvation = -2581.880350 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14009 -39.56464 -36.01077 -33.82280 -33.26285 -33.18944 -28.63511 -27.97335 -26.13984 -25.55167 -22.35590 -21.27636 -20.37645 -19.42278 -17.83525 -16.99411 -16.56937 -16.34586 -16.11688 -15.27676 -15.11706 -14.62555 -14.35408 -14.18142 -13.96395 -13.64700 -13.21753 -12.97713 -12.87622 -12.48238 -12.43026 -12.25865 -12.15887 -11.97931 -11.82157 -11.50059 -11.46879 -11.38937 -10.36344 -10.24669 -9.14318 -8.41943 -6.02654 1.28572 1.34453 1.43157 1.95816 2.22116 2.65617 3.13589 3.22641 3.70052 3.77526 4.02272 4.19630 4.26856 4.30418 4.41226 4.43149 4.55057 4.67718 4.78258 4.90878 4.97578 5.01102 5.11406 5.14780 5.21338 5.24931 5.35212 5.52713 5.56075 5.91986 6.07753 6.27586 6.60342 6.88249 7.39607 7.97775 8.75962 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042959 B = 0.006871 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.623848 B = 4074.326539 C = 4363.810312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.123 4.123 5 C -0.122 4.122 6 C 0.047 3.953 7 N -0.523 5.523 8 C 0.052 3.948 9 C 0.448 3.552 10 O -0.608 6.608 11 N -0.593 5.593 12 C -0.328 4.328 13 H 0.053 0.947 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.256 1.256 18 H -0.273 1.273 19 H -0.233 1.233 20 H 0.044 0.956 21 H 0.080 0.920 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.389 0.611 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 8.585 -19.809 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.005 4.005 3 C -0.222 4.222 4 C -0.161 4.161 5 C -0.160 4.160 6 C -0.080 4.080 7 N -0.248 5.248 8 C -0.080 4.080 9 C 0.236 3.764 10 O -0.491 6.491 11 N -0.235 5.235 12 C -0.457 4.457 13 H 0.072 0.928 14 C -0.214 4.214 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.180 1.180 18 H -0.198 1.198 19 H -0.156 1.156 20 H 0.063 0.937 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.224 0.776 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.094 7.645 -19.177 21.264 hybrid contribution 1.253 0.574 0.511 1.470 sum -3.842 8.218 -18.665 20.753 Atomic orbital electron populations 1.21730 0.93023 1.01577 1.01731 1.22002 0.96503 0.93609 0.88393 1.22396 1.01202 0.95056 1.03552 1.22910 1.02098 0.94260 0.96836 1.22732 1.01680 0.97912 0.93708 1.22929 0.94554 0.94126 0.96431 1.63176 1.36298 1.08414 1.16903 1.22115 0.98789 0.96162 0.90904 1.21042 0.81207 0.87392 0.86756 1.90530 1.56542 1.22608 1.79457 1.42039 1.45554 1.18035 1.17921 1.18999 1.29106 1.01903 0.95740 0.92844 1.26114 0.96815 1.04043 0.94412 1.69805 1.37063 1.40723 1.10005 0.85367 0.78685 0.76915 0.80566 1.18025 1.19846 1.15621 0.93661 0.90087 0.93481 0.92225 0.89810 0.91852 0.88719 0.90348 0.89417 0.91019 0.94798 0.93361 0.90635 0.86459 0.77605 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 8.71 71.98 0.63 -1.96 16 2 C 0.08 1.89 1.16 3.87 0.00 1.89 16 3 C -0.16 -2.95 7.15 71.98 0.51 -2.44 16 4 C -0.12 -2.27 6.02 31.88 0.19 -2.08 16 5 C -0.12 -2.81 7.10 32.09 0.23 -2.59 16 6 C 0.05 1.56 5.66 86.77 0.49 2.05 16 7 N -0.52 -16.98 4.52 -841.01 -3.80 -20.78 16 8 C 0.05 1.72 4.16 85.56 0.36 2.08 16 9 C 0.45 21.38 7.47 87.66 0.66 22.03 16 10 O -0.61 -35.30 14.61 -3.08 -0.05 -35.35 16 11 N -0.59 -29.11 5.09 -306.97 -1.56 -30.68 16 12 C -0.33 -19.79 10.16 84.04 0.85 -18.93 16 13 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 14 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 15 N -0.94 -57.36 13.96 21.66 0.30 -57.06 16 16 Si 0.96 39.51 27.74 68.60 1.90 41.42 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 19 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 20 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 22 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.06 1.07 6.60 -2.39 -0.02 1.06 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.16 6.71 -2.39 -0.02 1.15 16 26 H 0.09 1.36 7.83 -2.39 -0.02 1.34 16 27 H 0.08 1.28 7.85 -2.39 -0.02 1.26 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.03 1.12 7.68 -2.39 -0.02 1.10 16 31 H 0.05 1.98 7.34 -2.39 -0.02 1.97 16 32 H 0.08 2.15 6.61 -2.39 -0.02 2.14 16 33 H 0.12 3.37 6.39 -2.39 -0.02 3.35 16 34 H 0.39 15.81 5.76 -92.71 -0.53 15.27 16 35 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -76.40 277.06 1.67 -74.73 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.48 Total: 28.06 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 4.39 Total: -0.35 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -5.06 Total: -108.51 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.05 Total: -35.35 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.42 kcal Total: -76.40 1.67 -74.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075134562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.071 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds