Wall clock time and date at job start Mon Mar 30 2020 03:06:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52992 * 110.01084 * 2 1
4 4 C 1.54319 * 109.88771 * 238.88780 * 2 1 3
5 5 C 1.55437 * 103.04824 * 262.87870 * 4 2 1
6 6 C 1.54912 * 101.51634 * 324.36323 * 5 4 2
7 7 N 1.47438 * 109.89110 * 121.11998 * 2 1 3
8 8 C 1.46902 * 110.99823 * 242.66450 * 7 2 1
9 9 C 1.50707 * 109.47071 * 173.32739 * 8 7 2
10 10 O 1.21297 * 119.99809 * 354.32711 * 9 8 7
11 11 N 1.34778 * 119.99852 * 174.33017 * 9 8 7
12 12 C 1.37092 * 119.99866 * 179.97438 * 11 9 8
13 13 H 1.08008 * 120.00314 * 359.97438 * 12 11 9
14 14 C 1.38951 * 120.00258 * 180.02562 * 12 11 9
15 15 N 1.31405 * 120.00243 * 180.02562 * 14 12 11
16 16 Si 1.86796 * 119.99696 * 359.97438 * 14 12 11
17 17 H 1.48506 * 109.47124 * 90.00584 * 16 14 12
18 18 H 1.48501 * 109.47615 * 210.00251 * 16 14 12
19 19 H 1.48500 * 109.47287 * 330.00638 * 16 14 12
20 20 H 1.08997 * 109.46968 * 298.88041 * 1 2 3
21 21 H 1.09002 * 109.47435 * 58.88455 * 1 2 3
22 22 H 1.09009 * 109.47082 * 178.88364 * 1 2 3
23 23 H 1.09001 * 109.47340 * 176.24858 * 3 2 1
24 24 H 1.09003 * 109.47516 * 296.25674 * 3 2 1
25 25 H 1.09002 * 109.47330 * 56.25114 * 3 2 1
26 26 H 1.09000 * 110.70776 * 21.25710 * 4 2 1
27 27 H 1.08999 * 110.70964 * 144.31986 * 4 2 1
28 28 H 1.09002 * 111.10690 * 206.29936 * 5 4 2
29 29 H 1.08992 * 111.00183 * 82.38896 * 5 4 2
30 30 H 1.08996 * 110.37420 * 278.17942 * 6 5 4
31 31 H 1.09000 * 110.36877 * 155.94946 * 6 5 4
32 32 H 1.08996 * 109.46872 * 293.32153 * 8 7 2
33 33 H 1.09000 * 109.47266 * 53.32758 * 8 7 2
34 34 H 0.97001 * 120.00016 * 359.97438 * 11 9 8
35 35 H 0.97006 * 120.00311 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0535 1.4376 0.0000
4 6 2.0549 -0.7498 -1.2424
5 6 2.3508 -2.1738 -0.6939
6 6 2.8586 -1.8556 0.7346
7 7 2.0316 -0.7165 1.1869
8 6 2.8029 0.1813 2.0569
9 6 3.1587 -0.5382 3.3324
10 8 2.7188 -1.6484 3.5453
11 7 3.9655 0.0518 4.2365
12 6 4.2887 -0.6025 5.3970
13 1 3.8964 -1.5908 5.5870
14 6 5.1201 0.0060 6.3293
15 7 5.4302 -0.6215 7.4415
16 14 5.7979 1.7154 6.0011
17 1 4.8605 2.7320 6.5425
18 1 7.1198 1.8592 6.6623
19 1 5.9523 1.9141 4.5375
20 1 -0.3633 0.4963 0.8998
21 1 -0.3634 0.5311 -0.8798
22 1 -0.3634 -1.0276 -0.0200
23 1 3.1414 1.4281 0.0672
24 1 1.7507 1.9346 -0.9216
25 1 1.6414 1.9744 0.8545
26 1 1.2925 -0.7877 -2.0205
27 1 2.9649 -0.2824 -1.6188
28 1 3.1241 -2.6681 -1.2820
29 1 1.4430 -2.7760 -0.6605
30 1 3.9112 -1.5738 0.7092
31 1 2.7121 -2.7145 1.3895
32 1 3.7157 0.4870 1.5456
33 1 2.2052 1.0622 2.2913
34 1 4.3175 0.9395 4.0660
35 1 6.0110 -0.1968 8.0922
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000075134562.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:12
Heat of formation + Delta-G solvation = -50.658342 kcal
Electronic energy + Delta-G solvation = -16259.583722 eV
Core-core repulsion = 13677.703373 eV
Total energy + Delta-G solvation = -2581.880350 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.14009 -39.56464 -36.01077 -33.82280 -33.26285 -33.18944 -28.63511 -27.97335
-26.13984 -25.55167 -22.35590 -21.27636 -20.37645 -19.42278 -17.83525 -16.99411
-16.56937 -16.34586 -16.11688 -15.27676 -15.11706 -14.62555 -14.35408 -14.18142
-13.96395 -13.64700 -13.21753 -12.97713 -12.87622 -12.48238 -12.43026 -12.25865
-12.15887 -11.97931 -11.82157 -11.50059 -11.46879 -11.38937 -10.36344 -10.24669
-9.14318 -8.41943 -6.02654 1.28572 1.34453 1.43157 1.95816 2.22116
2.65617 3.13589 3.22641 3.70052 3.77526 4.02272 4.19630 4.26856
4.30418 4.41226 4.43149 4.55057 4.67718 4.78258 4.90878 4.97578
5.01102 5.11406 5.14780 5.21338 5.24931 5.35212 5.52713 5.56075
5.91986 6.07753 6.27586 6.60342 6.88249 7.39607 7.97775 8.75962
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.042959 B = 0.006871 C = 0.006415
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.623848 B = 4074.326539 C = 4363.810312
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.083 3.917
3 C -0.164 4.164
4 C -0.123 4.123
5 C -0.122 4.122
6 C 0.047 3.953
7 N -0.523 5.523
8 C 0.052 3.948
9 C 0.448 3.552
10 O -0.608 6.608
11 N -0.593 5.593
12 C -0.328 4.328
13 H 0.053 0.947
14 C -0.015 4.015
15 N -0.935 5.935
16 Si 0.965 3.035
17 H -0.256 1.256
18 H -0.273 1.273
19 H -0.233 1.233
20 H 0.044 0.956
21 H 0.080 0.920
22 H 0.046 0.954
23 H 0.059 0.941
24 H 0.083 0.917
25 H 0.063 0.937
26 H 0.094 0.906
27 H 0.078 0.922
28 H 0.087 0.913
29 H 0.071 0.929
30 H 0.034 0.966
31 H 0.048 0.952
32 H 0.076 0.924
33 H 0.118 0.882
34 H 0.389 0.611
35 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.475 8.585 -19.809 22.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.005 4.005
3 C -0.222 4.222
4 C -0.161 4.161
5 C -0.160 4.160
6 C -0.080 4.080
7 N -0.248 5.248
8 C -0.080 4.080
9 C 0.236 3.764
10 O -0.491 6.491
11 N -0.235 5.235
12 C -0.457 4.457
13 H 0.072 0.928
14 C -0.214 4.214
15 N -0.576 5.576
16 Si 0.785 3.215
17 H -0.180 1.180
18 H -0.198 1.198
19 H -0.156 1.156
20 H 0.063 0.937
21 H 0.099 0.901
22 H 0.065 0.935
23 H 0.078 0.922
24 H 0.102 0.898
25 H 0.081 0.919
26 H 0.113 0.887
27 H 0.097 0.903
28 H 0.106 0.894
29 H 0.090 0.910
30 H 0.052 0.948
31 H 0.066 0.934
32 H 0.094 0.906
33 H 0.135 0.865
34 H 0.224 0.776
35 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -5.094 7.645 -19.177 21.264
hybrid contribution 1.253 0.574 0.511 1.470
sum -3.842 8.218 -18.665 20.753
Atomic orbital electron populations
1.21730 0.93023 1.01577 1.01731 1.22002 0.96503 0.93609 0.88393
1.22396 1.01202 0.95056 1.03552 1.22910 1.02098 0.94260 0.96836
1.22732 1.01680 0.97912 0.93708 1.22929 0.94554 0.94126 0.96431
1.63176 1.36298 1.08414 1.16903 1.22115 0.98789 0.96162 0.90904
1.21042 0.81207 0.87392 0.86756 1.90530 1.56542 1.22608 1.79457
1.42039 1.45554 1.18035 1.17921 1.18999 1.29106 1.01903 0.95740
0.92844 1.26114 0.96815 1.04043 0.94412 1.69805 1.37063 1.40723
1.10005 0.85367 0.78685 0.76915 0.80566 1.18025 1.19846 1.15621
0.93661 0.90087 0.93481 0.92225 0.89810 0.91852 0.88719 0.90348
0.89417 0.91019 0.94798 0.93361 0.90635 0.86459 0.77605 0.91134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.59 8.71 71.98 0.63 -1.96 16
2 C 0.08 1.89 1.16 3.87 0.00 1.89 16
3 C -0.16 -2.95 7.15 71.98 0.51 -2.44 16
4 C -0.12 -2.27 6.02 31.88 0.19 -2.08 16
5 C -0.12 -2.81 7.10 32.09 0.23 -2.59 16
6 C 0.05 1.56 5.66 86.77 0.49 2.05 16
7 N -0.52 -16.98 4.52 -841.01 -3.80 -20.78 16
8 C 0.05 1.72 4.16 85.56 0.36 2.08 16
9 C 0.45 21.38 7.47 87.66 0.66 22.03 16
10 O -0.61 -35.30 14.61 -3.08 -0.05 -35.35 16
11 N -0.59 -29.11 5.09 -306.97 -1.56 -30.68 16
12 C -0.33 -19.79 10.16 84.04 0.85 -18.93 16
13 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16
14 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16
15 N -0.94 -57.36 13.96 21.66 0.30 -57.06 16
16 Si 0.96 39.51 27.74 68.60 1.90 41.42 16
17 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16
18 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16
19 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16
20 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16
21 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16
22 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16
23 H 0.06 1.07 6.60 -2.39 -0.02 1.06 16
24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
25 H 0.06 1.16 6.71 -2.39 -0.02 1.15 16
26 H 0.09 1.36 7.83 -2.39 -0.02 1.34 16
27 H 0.08 1.28 7.85 -2.39 -0.02 1.26 16
28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
30 H 0.03 1.12 7.68 -2.39 -0.02 1.10 16
31 H 0.05 1.98 7.34 -2.39 -0.02 1.97 16
32 H 0.08 2.15 6.61 -2.39 -0.02 2.14 16
33 H 0.12 3.37 6.39 -2.39 -0.02 3.35 16
34 H 0.39 15.81 5.76 -92.71 -0.53 15.27 16
35 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16
Total: -1.00 -76.40 277.06 1.67 -74.73
By element:
Atomic # 1 Polarization: 27.58 SS G_CDS: 0.48 Total: 28.06 kcal
Atomic # 6 Polarization: -4.74 SS G_CDS: 4.39 Total: -0.35 kcal
Atomic # 7 Polarization: -103.45 SS G_CDS: -5.06 Total: -108.51 kcal
Atomic # 8 Polarization: -35.30 SS G_CDS: -0.05 Total: -35.35 kcal
Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.42 kcal
Total: -76.40 1.67 -74.73 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075134562.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.071 kcal
(2) G-P(sol) polarization free energy of solvation -76.402 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.331 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.729 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds