Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48507 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46950 * 300.00124 * 3 2 1 6 6 H 1.48494 * 109.47032 * 60.00104 * 3 2 1 7 7 C 1.37882 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99585 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46552 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46790 * 55.00363 * 10 9 7 12 12 C 1.52995 * 109.47513 * 295.00177 * 10 9 7 13 13 C 1.53000 * 109.47060 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46832 * 60.00260 * 13 12 10 15 15 C 1.52995 * 109.47085 * 299.99725 * 14 13 12 16 16 C 1.52995 * 109.47424 * 60.00052 * 15 14 13 17 17 H 1.08999 * 109.47409 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.47009 * 59.99993 * 16 15 14 19 19 C 1.34777 * 119.99854 * 84.99752 * 18 16 15 20 20 N 1.34773 * 120.00097 * 180.27545 * 19 18 16 21 21 O 1.21593 * 119.99953 * 0.02562 * 19 18 16 22 22 H 0.97001 * 119.99735 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47361 * 60.00648 * 9 7 2 24 24 H 1.08998 * 109.47197 * 299.99500 * 9 7 2 25 25 H 1.09007 * 109.46736 * 300.00204 * 12 10 9 26 26 H 1.09005 * 109.47038 * 59.99589 * 12 10 9 27 27 H 1.09007 * 109.46641 * 179.97438 * 13 12 10 28 28 H 1.08993 * 109.47037 * 299.99598 * 13 12 10 29 29 H 1.08998 * 109.47435 * 60.00044 * 14 13 12 30 30 H 1.09002 * 109.46660 * 179.97438 * 14 13 12 31 31 H 1.09007 * 109.47038 * 300.00597 * 15 14 13 32 32 H 1.09001 * 109.47411 * 180.02562 * 15 14 13 33 33 H 0.97000 * 120.00410 * 265.00478 * 18 16 15 34 34 H 0.96998 * 120.00525 * 179.72346 * 20 19 18 35 35 H 0.97000 * 120.00112 * 359.73180 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9292 -3.5552 0.8424 12 6 3.0400 -3.6537 -1.3067 13 6 4.0347 -4.8162 -1.3063 14 6 3.2742 -6.1379 -1.1804 15 6 2.4794 -6.1464 0.1269 16 6 1.4848 -4.9838 0.1266 17 1 0.9182 -4.9901 1.0578 18 7 0.5654 -5.1280 -1.0048 19 6 -0.5337 -5.8989 -0.8860 20 7 -1.3766 -6.0360 -1.9286 21 8 -0.7624 -6.4744 0.1604 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.3558 -3.7605 -2.1486 26 1 3.5820 -2.7122 -1.3963 27 1 4.6006 -4.8104 -2.2380 28 1 4.7187 -4.7089 -0.4646 29 1 2.5902 -6.2452 -2.0222 30 1 3.9828 -6.9662 -1.1806 31 1 3.1635 -6.0390 0.9687 32 1 1.9379 -7.0881 0.2169 33 1 0.7476 -4.6687 -1.8396 34 1 -2.1655 -6.5941 -1.8445 35 1 -1.1943 -5.5768 -2.7634 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075598259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -65.644025 kcal Electronic energy + Delta-G solvation = -16416.291534 eV Core-core repulsion = 13833.761357 eV Total energy + Delta-G solvation = -2582.530178 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90930 -37.85818 -33.50944 -33.36441 -32.75838 -31.11199 -29.17273 -26.56926 -23.25056 -22.25784 -21.19748 -20.19701 -18.63622 -17.95577 -16.75689 -16.18964 -15.10360 -14.68830 -14.54454 -14.28303 -13.88658 -13.63163 -13.03327 -12.54103 -12.17866 -11.90297 -11.66363 -11.33792 -11.19225 -10.85569 -10.67524 -10.32125 -10.18835 -9.92656 -9.84800 -9.56194 -9.39006 -9.18732 -8.92840 -8.40706 -8.31681 -5.99932 -4.01912 3.29625 3.37585 3.37917 3.40949 3.64835 4.44971 4.86490 5.20318 5.23403 5.26872 5.36176 5.71403 5.75246 5.94400 6.03463 6.06301 6.10268 6.18173 6.39364 6.45434 6.56190 6.64317 6.89078 7.00666 7.03612 7.08794 7.18150 7.25362 7.68715 7.80845 8.00076 8.37774 8.43341 9.03440 9.05159 9.61903 11.10981 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.008396 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.283258 B = 3334.127421 C = 4021.530159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.089 4.089 11 H 0.072 0.928 12 C -0.103 4.103 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.130 4.130 16 C 0.167 3.833 17 H 0.082 0.918 18 N -0.723 5.723 19 C 0.704 3.296 20 N -0.873 5.873 21 O -0.605 6.605 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.396 0.604 34 H 0.409 0.591 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 -10.369 -5.825 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.108 4.108 11 H 0.090 0.910 12 C -0.141 4.141 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.168 4.168 16 C 0.062 3.938 17 H 0.100 0.900 18 N -0.378 5.378 19 C 0.403 3.597 20 N -0.441 5.441 21 O -0.484 6.484 22 H 0.068 0.932 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.240 0.760 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.260 -10.654 -4.852 12.152 hybrid contribution 0.166 1.249 -0.810 1.498 sum 3.426 -9.405 -5.663 11.500 Atomic orbital electron populations 1.69983 1.06009 1.26349 1.50982 1.25022 0.94786 0.99154 0.95512 0.86601 0.80139 0.84117 0.77515 1.19771 1.21171 1.21111 1.21290 0.92991 0.90938 1.50202 0.92517 1.19097 0.93399 0.90784 0.97332 1.21531 0.97978 0.93780 0.97524 0.91004 1.21489 0.97229 0.97822 0.97560 1.21632 0.98242 0.95212 1.00883 1.21456 0.98398 0.97201 0.97982 1.21941 0.98058 0.99074 0.97770 1.20962 0.89072 0.94847 0.88907 0.90011 1.45192 1.24044 1.51053 1.17556 1.16022 0.80138 0.79904 0.83669 1.42981 1.29232 1.56352 1.15516 1.90912 1.76670 1.52730 1.28131 0.93161 0.96519 0.96658 0.93240 0.90784 0.92936 0.92314 0.92517 0.93057 0.91448 0.92196 0.76915 0.75997 0.77815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -13.89 8.41 -34.44 -0.29 -14.18 16 8 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 9 C 0.03 0.76 4.22 -27.88 -0.12 0.64 16 10 C -0.09 -1.71 1.93 -90.62 -0.17 -1.88 16 11 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.10 -1.74 4.84 -26.73 -0.13 -1.87 16 13 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 14 C -0.11 -1.50 5.77 -26.73 -0.15 -1.65 16 15 C -0.13 -1.95 5.60 -26.74 -0.15 -2.10 16 16 C 0.17 2.95 2.23 -67.93 -0.15 2.80 16 17 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 18 N -0.72 -11.81 3.62 -58.68 -0.21 -12.02 16 19 C 0.70 12.02 8.80 -86.92 -0.77 11.25 16 20 N -0.87 -10.58 8.88 27.63 0.25 -10.33 16 21 O -0.61 -12.77 16.84 5.28 0.09 -12.68 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.42 7.61 -51.93 -0.40 0.03 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.80 6.51 -51.93 -0.34 0.46 16 26 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.40 5.90 6.68 -40.82 -0.27 5.63 16 34 H 0.41 4.31 8.93 -40.82 -0.36 3.94 16 35 H 0.39 3.69 8.84 -40.82 -0.36 3.33 16 LS Contribution 279.72 15.07 4.22 4.22 Total: -1.00 -32.09 279.72 -7.48 -39.57 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.34 Total: 8.09 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.19 Total: -7.36 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.77 Total: -48.08 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.09 -7.48 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075598259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.078 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds