Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.50236 * 2 1 4 4 C 1.53370 * 109.50531 * 120.08084 * 2 1 3 5 5 C 1.51500 * 108.09735 * 172.19631 * 4 2 1 6 6 N 1.28007 * 121.21745 * 131.55588 * 5 4 2 7 7 N 1.40096 * 120.00452 * 184.66884 * 6 5 4 8 8 C 1.46503 * 120.00146 * 174.64327 * 7 6 5 9 9 C 1.50704 * 109.47183 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99649 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99748 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00041 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99692 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47112 * 180.02562 * 13 11 9 15 15 H 1.48509 * 109.47014 * 299.99663 * 13 11 9 16 16 H 1.48503 * 109.47245 * 59.99545 * 13 11 9 17 17 C 1.51517 * 117.57322 * 311.83461 * 5 4 2 18 18 C 1.52947 * 108.31144 * 48.09646 * 17 5 4 19 19 O 1.42889 * 109.36084 * 307.99314 * 18 17 5 20 20 H 1.09000 * 109.47024 * 299.91876 * 1 2 3 21 21 H 1.08997 * 109.47095 * 59.91877 * 1 2 3 22 22 H 1.09006 * 109.47097 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47021 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47505 * 300.08243 * 3 2 1 25 25 H 1.09001 * 109.47177 * 60.08426 * 3 2 1 26 26 H 1.09000 * 109.73474 * 52.54230 * 4 2 1 27 27 H 1.08995 * 109.76910 * 291.87076 * 4 2 1 28 28 H 0.96995 * 120.00265 * 354.64371 * 7 6 5 29 29 H 1.08997 * 109.47353 * 60.00047 * 8 7 6 30 30 H 1.09001 * 109.47000 * 300.00201 * 8 7 6 31 31 H 0.96995 * 120.00087 * 0.02562 * 12 11 9 32 32 H 1.08999 * 109.74136 * 167.81635 * 17 5 4 33 33 H 1.09004 * 109.73347 * 288.51724 * 17 5 4 34 34 H 1.09004 * 109.57394 * 187.96147 * 18 17 5 35 35 H 1.09000 * 109.35082 * 67.89451 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0421 -0.7246 1.2510 5 6 3.5441 -0.8774 1.1246 6 7 4.3265 -0.5604 2.0869 7 7 5.7149 -0.6190 1.9092 8 6 6.6095 -0.1454 2.9683 9 6 8.0413 -0.3163 2.5301 10 1 8.2626 -0.7353 1.5597 11 6 9.0686 0.0624 3.3683 12 7 8.7989 0.5731 4.5498 13 14 10.8433 -0.1488 2.8248 14 1 11.7501 0.3300 3.8989 15 1 11.1109 -1.5844 2.5552 16 1 11.0796 0.6395 1.5887 17 6 4.0869 -1.4130 -0.1847 18 6 3.4261 -0.6435 -1.3295 19 8 2.0071 -0.6759 -1.1651 20 1 -0.3633 0.5126 0.8907 21 1 -0.3633 0.5151 -0.8892 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1308 1.4415 -0.0005 24 1 1.6765 1.9567 -0.8892 25 1 1.6790 1.9558 0.8907 26 1 1.5768 -1.7077 1.3233 27 1 1.8050 -0.1390 2.1392 28 1 6.0839 -0.9731 1.0851 29 1 6.4356 -0.7230 3.8761 30 1 6.4135 0.9086 3.1652 31 1 7.8774 0.6830 4.8318 32 1 5.1668 -1.2702 -0.2214 33 1 3.8520 -2.4737 -0.2741 34 1 3.6928 -1.1040 -2.2808 35 1 3.7706 0.3905 -1.3158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075598274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -18.936531 kcal Electronic energy + Delta-G solvation = -15844.465955 eV Core-core repulsion = 13263.961166 eV Total energy + Delta-G solvation = -2580.504789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83838 -36.56825 -33.89162 -33.64850 -31.74657 -29.56028 -27.75343 -27.36470 -25.03760 -23.49601 -22.29042 -20.23276 -18.53495 -17.34334 -16.43999 -16.17825 -14.94692 -14.85798 -14.39316 -13.98120 -13.81460 -13.33094 -13.14166 -12.89348 -12.34805 -12.28177 -12.01862 -11.83009 -11.72158 -11.46920 -11.15425 -10.96569 -10.89537 -10.57806 -10.29803 -10.16560 -9.58353 -9.26419 -8.77920 -8.55085 -6.96677 -6.54025 -4.26016 2.79485 3.36242 3.38347 3.57113 3.68599 3.82465 4.44403 4.77820 4.83230 4.93720 5.00221 5.22426 5.25521 5.28585 5.35521 5.54414 5.57778 5.67488 5.74799 5.78776 5.91331 5.98562 6.00026 6.13662 6.26514 6.39685 6.78770 7.21360 7.27294 7.28551 7.89483 7.93373 8.42762 8.66809 9.29120 9.48092 10.86467 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052048 B = 0.005281 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.836020 B = 5301.125205 C = 5527.292393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.117 3.883 3 C -0.177 4.177 4 C -0.066 4.066 5 C 0.000 4.000 6 N -0.213 5.213 7 N -0.640 5.640 8 C 0.275 3.725 9 C -0.618 4.618 10 H 0.054 0.946 11 C 0.024 3.976 12 N -0.903 5.903 13 Si 1.076 2.924 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.286 1.286 17 C -0.141 4.141 18 C 0.069 3.931 19 O -0.375 6.375 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.372 0.628 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.271 0.729 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -1.302 -10.434 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.077 3.923 3 C -0.234 4.234 4 C -0.106 4.106 5 C -0.195 4.195 6 N -0.022 5.022 7 N -0.380 5.380 8 C 0.153 3.847 9 C -0.657 4.657 10 H 0.072 0.928 11 C -0.181 4.181 12 N -0.538 5.538 13 Si 0.903 3.097 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.213 1.213 17 C -0.181 4.181 18 C -0.008 4.008 19 O -0.294 6.294 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.211 0.789 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.109 -0.766 -8.931 15.065 hybrid contribution -0.984 -0.642 -1.341 1.783 sum -13.093 -1.407 -10.272 16.701 Atomic orbital electron populations 1.21749 0.92274 1.02812 1.02463 1.21512 0.94413 0.91251 0.85130 1.22400 1.02464 0.96137 1.02430 1.20970 0.89703 1.01475 0.98434 1.24126 0.95538 1.07310 0.92488 1.73378 0.93504 1.09940 1.25423 1.48636 0.97029 1.71602 1.20733 1.18888 0.86909 0.93161 0.85731 1.22027 0.90777 1.47745 1.05190 0.92774 1.25863 1.05288 0.93315 0.93674 1.70767 1.23161 1.40579 1.19282 0.83444 0.74178 0.76439 0.75621 1.20475 1.21294 1.21290 1.21582 1.00722 1.01071 0.94763 1.22445 0.81027 0.99701 0.97673 1.87864 1.21351 1.76300 1.43919 0.91000 0.91847 0.91751 0.91739 0.92081 0.91389 0.90273 0.89830 0.78942 0.97670 0.97681 0.91825 0.90626 0.90134 0.88896 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.85 37.16 0.33 -0.96 16 2 C 0.12 1.43 1.11 -90.43 -0.10 1.33 16 3 C -0.18 -2.16 7.97 37.15 0.30 -1.87 16 4 C -0.07 -0.91 5.13 -27.30 -0.14 -1.05 16 5 C 0.00 -0.01 5.73 -78.12 -0.45 -0.45 16 6 N -0.21 -4.49 11.44 35.99 0.41 -4.08 16 7 N -0.64 -14.95 6.51 -11.65 -0.08 -15.03 16 8 C 0.28 7.47 5.74 -5.19 -0.03 7.44 16 9 C -0.62 -17.53 9.28 -34.44 -0.32 -17.85 16 10 H 0.05 1.49 7.60 -52.49 -0.40 1.09 16 11 C 0.02 0.69 5.46 -17.82 -0.10 0.59 16 12 N -0.90 -27.35 13.65 55.43 0.76 -26.59 16 13 Si 1.08 24.73 29.90 -169.99 -5.08 19.65 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 17 C -0.14 -2.10 6.08 -27.51 -0.17 -2.27 16 18 C 0.07 0.89 6.51 37.13 0.24 1.14 16 19 O -0.38 -5.01 10.18 -35.23 -0.36 -5.37 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.93 5.76 -51.93 -0.30 0.63 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.37 8.14 5.84 -182.60 -1.07 7.07 16 29 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 30 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 31 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 32 H 0.08 1.20 5.69 -51.93 -0.30 0.90 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.73 6.12 -51.93 -0.32 0.41 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -31.11 282.39 -6.63 -37.74 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.10 Total: 3.38 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.44 Total: -13.95 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 1.09 Total: -45.70 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.36 Total: -5.37 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.11 -6.63 -37.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075598274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.802 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds