Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.50236 * 2 1 4 4 C 1.53370 * 109.50531 * 120.08084 * 2 1 3 5 5 C 1.51500 * 108.09735 * 172.19631 * 4 2 1 6 6 N 1.28007 * 121.21745 * 131.55588 * 5 4 2 7 7 N 1.40096 * 120.00452 * 184.66884 * 6 5 4 8 8 C 1.46503 * 120.00146 * 174.64327 * 7 6 5 9 9 C 1.50704 * 109.47183 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99649 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99748 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00041 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99692 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47112 * 180.02562 * 13 11 9 15 15 H 1.48509 * 109.47014 * 299.99663 * 13 11 9 16 16 H 1.48503 * 109.47245 * 59.99545 * 13 11 9 17 17 C 1.51517 * 117.57322 * 311.83461 * 5 4 2 18 18 C 1.52947 * 108.31144 * 48.09646 * 17 5 4 19 19 O 1.42889 * 109.36084 * 307.99314 * 18 17 5 20 20 H 1.09000 * 109.47024 * 299.91876 * 1 2 3 21 21 H 1.08997 * 109.47095 * 59.91877 * 1 2 3 22 22 H 1.09006 * 109.47097 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47021 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47505 * 300.08243 * 3 2 1 25 25 H 1.09001 * 109.47177 * 60.08426 * 3 2 1 26 26 H 1.09000 * 109.73474 * 52.54230 * 4 2 1 27 27 H 1.08995 * 109.76910 * 291.87076 * 4 2 1 28 28 H 0.96995 * 120.00265 * 354.64371 * 7 6 5 29 29 H 1.08997 * 109.47353 * 60.00047 * 8 7 6 30 30 H 1.09001 * 109.47000 * 300.00201 * 8 7 6 31 31 H 0.96995 * 120.00087 * 0.02562 * 12 11 9 32 32 H 1.08999 * 109.74136 * 167.81635 * 17 5 4 33 33 H 1.09004 * 109.73347 * 288.51724 * 17 5 4 34 34 H 1.09004 * 109.57394 * 187.96147 * 18 17 5 35 35 H 1.09000 * 109.35082 * 67.89451 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0421 -0.7246 1.2510 5 6 3.5441 -0.8774 1.1246 6 7 4.3265 -0.5604 2.0869 7 7 5.7149 -0.6190 1.9092 8 6 6.6095 -0.1454 2.9683 9 6 8.0413 -0.3163 2.5301 10 1 8.2626 -0.7353 1.5597 11 6 9.0686 0.0624 3.3683 12 7 8.7989 0.5731 4.5498 13 14 10.8433 -0.1488 2.8248 14 1 11.7501 0.3300 3.8989 15 1 11.1109 -1.5844 2.5552 16 1 11.0796 0.6395 1.5887 17 6 4.0869 -1.4130 -0.1847 18 6 3.4261 -0.6435 -1.3295 19 8 2.0071 -0.6759 -1.1651 20 1 -0.3633 0.5126 0.8907 21 1 -0.3633 0.5151 -0.8892 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1308 1.4415 -0.0005 24 1 1.6765 1.9567 -0.8892 25 1 1.6790 1.9558 0.8907 26 1 1.5768 -1.7077 1.3233 27 1 1.8050 -0.1390 2.1392 28 1 6.0839 -0.9731 1.0851 29 1 6.4356 -0.7230 3.8761 30 1 6.4135 0.9086 3.1652 31 1 7.8774 0.6830 4.8318 32 1 5.1668 -1.2702 -0.2214 33 1 3.8520 -2.4737 -0.2741 34 1 3.6928 -1.1040 -2.2808 35 1 3.7706 0.3905 -1.3158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075598274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -40.280787 kcal Electronic energy + Delta-G solvation = -15845.391511 eV Core-core repulsion = 13263.961166 eV Total energy + Delta-G solvation = -2581.430345 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97000 -38.11749 -35.87650 -34.69755 -33.45581 -31.00317 -29.13807 -28.27081 -26.90914 -24.68682 -24.29970 -21.43531 -19.97372 -19.16682 -17.90653 -17.26839 -16.48423 -16.01202 -15.68508 -15.51766 -15.33712 -14.98880 -14.79173 -14.22963 -14.06723 -13.28236 -13.15767 -13.00710 -12.87937 -12.73833 -12.66461 -12.51150 -12.22028 -12.14642 -11.93456 -11.38418 -11.00417 -10.77714 -10.71276 -10.53464 -8.84046 -8.74270 -6.57912 1.33706 1.51833 1.60584 1.80488 2.10480 2.53244 2.74774 3.04218 3.58082 3.77859 3.79706 3.96857 4.09118 4.16267 4.23613 4.53388 4.60963 4.67841 4.74895 4.80650 4.83131 4.92459 4.96937 5.01820 5.02700 5.11230 5.21640 5.38092 5.42883 5.81360 5.86918 6.25785 6.31877 6.44324 7.25071 7.68872 8.56295 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052048 B = 0.005281 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.836020 B = 5301.125205 C = 5527.292393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.117 3.883 3 C -0.176 4.176 4 C -0.071 4.071 5 C 0.034 3.966 6 N -0.266 5.266 7 N -0.656 5.656 8 C 0.293 3.707 9 C -0.631 4.631 10 H 0.062 0.938 11 C -0.026 4.026 12 N -0.926 5.926 13 Si 1.129 2.871 14 H -0.280 1.280 15 H -0.267 1.267 16 H -0.266 1.266 17 C -0.146 4.146 18 C 0.073 3.927 19 O -0.377 6.377 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.375 0.625 29 H -0.024 1.024 30 H -0.023 1.023 31 H 0.256 0.744 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 -1.927 -12.498 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.077 3.923 3 C -0.234 4.234 4 C -0.111 4.111 5 C -0.161 4.161 6 N -0.073 5.073 7 N -0.396 5.396 8 C 0.169 3.831 9 C -0.669 4.669 10 H 0.080 0.920 11 C -0.225 4.225 12 N -0.562 5.562 13 Si 0.948 3.052 14 H -0.205 1.205 15 H -0.192 1.192 16 H -0.191 1.191 17 C -0.187 4.187 18 C -0.005 4.005 19 O -0.296 6.296 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.215 0.785 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.110 -1.400 -11.014 17.180 hybrid contribution -0.921 -0.476 -0.787 1.301 sum -14.031 -1.876 -11.800 18.429 Atomic orbital electron populations 1.21763 0.89609 1.03751 1.03751 1.21661 0.96304 0.90549 0.83807 1.22410 1.00633 0.96734 1.03594 1.21241 0.87071 1.03013 0.99768 1.25069 0.96947 1.01844 0.92219 1.73460 0.92344 1.14017 1.27495 1.48147 0.98036 1.73445 1.19983 1.18375 0.87790 0.91009 0.85922 1.22357 0.91469 1.47532 1.05586 0.91991 1.27591 1.09995 0.91985 0.92965 1.70898 1.22135 1.42464 1.20681 0.82801 0.68706 0.77784 0.75901 1.20529 1.19169 1.19084 1.21721 1.00274 1.02276 0.94409 1.22489 0.80831 0.99285 0.97855 1.87885 1.21206 1.76368 1.44168 0.89482 0.90882 0.91014 0.94463 0.90508 0.90748 0.88284 0.89619 0.78463 1.00669 1.00574 0.93498 0.91758 0.88492 0.86142 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.85 71.98 0.64 -1.38 16 2 C 0.12 2.54 1.11 -10.67 -0.01 2.52 16 3 C -0.18 -4.00 7.97 71.98 0.57 -3.43 16 4 C -0.07 -1.81 5.13 30.23 0.16 -1.65 16 5 C 0.03 1.14 5.73 47.05 0.27 1.41 16 6 N -0.27 -11.48 11.44 -39.97 -0.46 -11.94 16 7 N -0.66 -31.75 6.51 -190.78 -1.24 -32.99 16 8 C 0.29 16.73 5.74 85.63 0.49 17.22 16 9 C -0.63 -36.59 9.28 25.60 0.24 -36.35 16 10 H 0.06 3.42 7.60 -2.91 -0.02 3.40 16 11 C -0.03 -1.53 5.46 84.66 0.46 -1.06 16 12 N -0.93 -57.69 13.65 21.45 0.29 -57.39 16 13 Si 1.13 49.24 29.90 68.60 2.05 51.29 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 C -0.15 -4.15 6.08 30.09 0.18 -3.97 16 18 C 0.07 1.71 6.51 71.96 0.47 2.18 16 19 O -0.38 -8.91 10.18 -148.98 -1.52 -10.43 16 20 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.04 1.04 5.76 -2.39 -0.01 1.03 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.38 16.88 5.84 -213.33 -1.25 15.63 16 29 H -0.02 -1.50 8.01 -2.39 -0.02 -1.52 16 30 H -0.02 -1.44 8.01 -2.39 -0.02 -1.46 16 31 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 32 H 0.06 2.01 5.69 -2.39 -0.01 1.99 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.05 1.23 6.12 -2.39 -0.01 1.22 16 Total: -1.00 -68.86 282.39 2.52 -66.34 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -0.07 Total: 19.63 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.47 Total: -24.50 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -1.41 Total: -102.33 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.52 Total: -10.43 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Total: -68.86 2.52 -66.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075598274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.054 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds