Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46890 * 111.00688 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.60411 * 35.32505 * 13 12 11 15 15 C 1.53347 * 109.60670 * 155.81229 * 13 12 11 16 16 C 1.53059 * 108.44058 * 187.27319 * 15 13 12 17 17 C 1.50182 * 109.89377 * 311.11784 * 16 15 13 18 18 O 1.21274 * 118.24775 * 197.56239 * 17 16 15 19 19 N 1.33354 * 123.50463 * 17.57759 * 17 16 15 20 20 C 1.45749 * 124.11287 * 357.75911 * 19 17 16 21 21 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 27 27 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 28 28 H 1.00905 * 110.99920 * 56.03919 * 12 11 10 29 29 H 1.08994 * 109.67097 * 307.02374 * 15 13 12 30 30 H 1.08999 * 109.67233 * 67.55665 * 15 13 12 31 31 H 1.08989 * 109.40235 * 190.98584 * 16 15 13 32 32 H 1.09007 * 109.32821 * 71.19898 * 16 15 13 33 33 H 0.97004 * 117.94346 * 177.77734 * 19 17 16 34 34 H 1.08998 * 109.30045 * 258.78466 * 20 19 17 35 35 H 1.09000 * 109.30348 * 139.40441 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0410 -4.0218 0.0004 13 6 7.5094 -4.0611 0.0009 14 1 7.8972 -3.2333 0.5947 15 6 7.9883 -5.3920 0.5933 16 6 9.5096 -5.3325 0.7504 17 6 10.1364 -4.8456 -0.5246 18 8 11.3214 -5.0409 -0.6927 19 7 9.4595 -4.2098 -1.4816 20 6 8.0262 -3.9496 -1.4340 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 -0.8895 23 1 3.8745 -0.6810 0.8905 24 1 3.6577 -3.1507 0.8897 25 1 3.6584 -3.1504 -0.8902 26 1 5.9147 -2.1229 -0.8901 27 1 5.9147 -2.1231 0.8899 28 1 5.6654 -4.5384 -0.7808 29 1 7.5245 -5.5482 1.5672 30 1 7.7206 -6.2092 -0.0765 31 1 9.8888 -6.3275 0.9833 32 1 9.7621 -4.6497 1.5617 33 1 9.9520 -3.9013 -2.2583 34 1 7.5074 -4.6746 -2.0611 35 1 7.8295 -2.9459 -1.8107 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082515895.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -57.152756 kcal Electronic energy + Delta-G solvation = -15279.696538 eV Core-core repulsion = 12697.534570 eV Total energy + Delta-G solvation = -2582.161969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.51406 -37.76269 -35.32726 -33.62168 -32.78325 -31.34608 -28.52990 -26.09384 -24.64104 -22.57924 -22.03222 -20.33772 -19.34868 -17.49085 -16.75590 -16.41319 -15.82430 -15.40133 -14.82287 -14.43865 -14.21198 -14.11865 -13.72826 -13.35481 -12.74246 -12.29902 -12.24240 -11.91300 -11.72908 -11.46799 -11.15180 -11.00342 -10.84421 -10.02518 -9.98438 -9.80181 -9.62919 -9.37146 -9.21280 -8.56560 -8.47919 -6.06632 -4.04776 2.40605 3.01889 3.27669 3.35699 3.38533 3.96248 4.36054 4.42489 4.43638 4.50102 4.81355 5.04656 5.07031 5.21101 5.27350 5.38364 5.52449 5.55945 5.62717 5.82355 5.89614 6.06092 6.44169 6.47270 6.48864 6.84218 6.97491 7.09219 7.28491 7.32545 7.41578 7.77103 7.95326 8.51865 8.98763 9.55790 11.06929 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.057764 B = 0.004297 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.615921 B = 6514.147387 C = 6750.719979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.054 3.946 12 N -0.676 5.676 13 C 0.072 3.928 14 H 0.087 0.913 15 C -0.113 4.113 16 C -0.135 4.135 17 C 0.519 3.481 18 O -0.564 6.564 19 N -0.716 5.716 20 C 0.078 3.922 21 H 0.263 0.737 22 H 0.009 0.991 23 H 0.016 0.984 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.343 0.657 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.398 0.602 34 H 0.068 0.932 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.674 -8.518 -1.105 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.075 4.075 12 N -0.306 5.306 13 C -0.039 4.039 14 H 0.105 0.895 15 C -0.151 4.151 16 C -0.175 4.175 17 C 0.307 3.693 18 O -0.443 6.443 19 N -0.368 5.368 20 C -0.048 4.048 21 H 0.073 0.927 22 H 0.027 0.973 23 H 0.034 0.966 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.918 -8.645 -0.289 19.001 hybrid contribution 0.542 1.447 -1.373 2.067 sum 17.460 -7.198 -1.663 18.958 Atomic orbital electron populations 1.69917 1.06312 1.26879 1.51175 1.25047 0.94737 0.99188 0.94608 0.86768 0.80347 0.83653 0.78422 1.20380 1.21373 1.19063 1.21143 0.89497 0.94472 1.50723 0.91007 1.19541 0.97223 0.92196 0.96120 1.21452 0.90841 0.99801 1.01729 1.22259 0.97913 0.87242 1.00065 1.60662 1.04570 1.15416 1.49938 1.21890 0.89418 0.99001 0.93633 0.89460 1.21682 0.93072 0.97094 1.03284 1.21652 0.96471 1.04089 0.95281 1.20308 0.86699 0.76837 0.85484 1.90753 1.16301 1.57423 1.79847 1.45417 1.09692 1.58725 1.22963 1.22324 0.80717 1.01975 0.99791 0.92737 0.97302 0.96607 0.91783 0.92948 0.95535 0.91224 0.83872 0.89288 0.91207 0.87923 0.88062 0.76724 0.91369 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.84 5.41 -26.74 -0.14 -1.98 16 11 C 0.05 0.75 5.49 -3.83 -0.02 0.73 16 12 N -0.68 -7.65 6.26 -106.58 -0.67 -8.31 16 13 C 0.07 0.66 2.54 -67.58 -0.17 0.49 16 14 H 0.09 0.86 7.80 -51.93 -0.40 0.46 16 15 C -0.11 -0.92 5.65 -26.52 -0.15 -1.07 16 16 C -0.13 -1.13 6.03 -28.10 -0.17 -1.30 16 17 C 0.52 5.78 7.71 -11.87 -0.09 5.68 16 18 O -0.56 -8.54 17.78 5.56 0.10 -8.44 16 19 N -0.72 -6.57 5.45 -61.39 -0.33 -6.91 16 20 C 0.08 0.65 6.46 -4.49 -0.03 0.62 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 23 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.36 7.64 -51.93 -0.40 -0.04 16 27 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 28 H 0.34 3.55 8.35 -39.29 -0.33 3.22 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.10 0.78 8.14 -51.94 -0.42 0.36 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.40 3.33 8.80 -40.82 -0.36 2.97 16 34 H 0.07 0.51 7.93 -51.93 -0.41 0.10 16 35 H 0.08 0.63 7.71 -51.93 -0.40 0.23 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -32.37 286.33 -7.41 -39.78 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.61 Total: 0.14 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.32 Total: -10.39 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.23 Total: -42.15 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.10 Total: -8.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.37 -7.41 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082515895.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.368 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds