Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46890 * 111.00688 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.60411 * 35.32505 * 13 12 11 15 15 C 1.53347 * 109.60670 * 155.81229 * 13 12 11 16 16 C 1.53059 * 108.44058 * 187.27319 * 15 13 12 17 17 C 1.50182 * 109.89377 * 311.11784 * 16 15 13 18 18 O 1.21274 * 118.24775 * 197.56239 * 17 16 15 19 19 N 1.33354 * 123.50463 * 17.57759 * 17 16 15 20 20 C 1.45749 * 124.11287 * 357.75911 * 19 17 16 21 21 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 27 27 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 28 28 H 1.00905 * 110.99920 * 56.03919 * 12 11 10 29 29 H 1.08994 * 109.67097 * 307.02374 * 15 13 12 30 30 H 1.08999 * 109.67233 * 67.55665 * 15 13 12 31 31 H 1.08989 * 109.40235 * 190.98584 * 16 15 13 32 32 H 1.09007 * 109.32821 * 71.19898 * 16 15 13 33 33 H 0.97004 * 117.94346 * 177.77734 * 19 17 16 34 34 H 1.08998 * 109.30045 * 258.78466 * 20 19 17 35 35 H 1.09000 * 109.30348 * 139.40441 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0410 -4.0218 0.0004 13 6 7.5094 -4.0611 0.0009 14 1 7.8972 -3.2333 0.5947 15 6 7.9883 -5.3920 0.5933 16 6 9.5096 -5.3325 0.7504 17 6 10.1364 -4.8456 -0.5246 18 8 11.3214 -5.0409 -0.6927 19 7 9.4595 -4.2098 -1.4816 20 6 8.0262 -3.9496 -1.4340 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 -0.8895 23 1 3.8745 -0.6810 0.8905 24 1 3.6577 -3.1507 0.8897 25 1 3.6584 -3.1504 -0.8902 26 1 5.9147 -2.1229 -0.8901 27 1 5.9147 -2.1231 0.8899 28 1 5.6654 -4.5384 -0.7808 29 1 7.5245 -5.5482 1.5672 30 1 7.7206 -6.2092 -0.0765 31 1 9.8888 -6.3275 0.9833 32 1 9.7621 -4.6497 1.5617 33 1 9.9520 -3.9013 -2.2583 34 1 7.5074 -4.6746 -2.0611 35 1 7.8295 -2.9459 -1.8107 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082515895.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = -82.169449 kcal Electronic energy + Delta-G solvation = -15280.781344 eV Core-core repulsion = 12697.534570 eV Total energy + Delta-G solvation = -2583.246774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32469 -38.69287 -36.56753 -35.09290 -33.93604 -32.84230 -29.73575 -27.47286 -25.44756 -23.89980 -22.98338 -21.88575 -20.19060 -18.86531 -18.30667 -17.22800 -16.66181 -16.51731 -16.21896 -15.67426 -15.38439 -15.06517 -14.74388 -14.54455 -14.22157 -13.79636 -13.55323 -12.93546 -12.80589 -12.65784 -12.42774 -12.30907 -11.87489 -11.79406 -11.47005 -11.39236 -11.18991 -10.85962 -10.74206 -10.15671 -9.37686 -8.27372 -6.31450 1.37441 1.39988 1.51673 1.57228 2.28271 2.38136 3.08311 3.09749 3.66284 3.70394 3.82669 4.10633 4.26801 4.34662 4.40522 4.44514 4.60778 4.68828 4.76742 4.90270 4.95746 5.03539 5.14132 5.18358 5.25799 5.57292 5.65918 5.70069 5.74784 6.04836 6.28729 6.32585 6.48565 6.77892 7.14883 7.33347 8.89700 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.057764 B = 0.004297 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.615921 B = 6514.147387 C = 6750.719979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.092 4.092 11 C 0.067 3.933 12 N -0.678 5.678 13 C 0.073 3.927 14 H 0.085 0.915 15 C -0.105 4.105 16 C -0.128 4.128 17 C 0.514 3.486 18 O -0.611 6.611 19 N -0.708 5.708 20 C 0.081 3.919 21 H 0.265 0.735 22 H 0.020 0.980 23 H 0.019 0.981 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.349 0.651 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.479 -7.958 -1.230 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.167 1.167 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.131 4.131 11 C -0.061 4.061 12 N -0.309 5.309 13 C -0.037 4.037 14 H 0.103 0.897 15 C -0.143 4.143 16 C -0.168 4.168 17 C 0.303 3.697 18 O -0.494 6.494 19 N -0.359 5.359 20 C -0.045 4.045 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.169 0.831 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.237 0.763 34 H 0.099 0.901 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.716 -8.099 -0.429 20.398 hybrid contribution -0.112 1.186 -1.347 1.799 sum 18.604 -6.913 -1.776 19.926 Atomic orbital electron populations 1.70084 1.08442 1.28125 1.52905 1.26084 0.95627 1.03730 0.94206 0.85609 0.79533 0.77993 0.79191 1.19106 1.21287 1.16710 1.21561 0.92490 0.92967 1.50079 0.95208 1.19506 0.93575 0.95361 0.96530 1.21270 0.94187 0.96663 1.00937 1.21965 0.94418 0.89019 1.00743 1.60554 1.05966 1.13784 1.50591 1.21888 0.87924 0.99608 0.94326 0.89679 1.21612 0.92681 0.96566 1.03468 1.21649 0.96319 1.04750 0.94111 1.20785 0.86184 0.76385 0.86323 1.90734 1.18327 1.59481 1.80878 1.45413 1.10130 1.57669 1.22658 1.22351 0.79946 1.02830 0.99358 0.92585 0.96165 0.96234 0.93285 0.93196 0.94241 0.91177 0.83109 0.89045 0.90686 0.87044 0.87042 0.76311 0.90105 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 3 Si 0.95 43.40 27.47 68.60 1.88 45.28 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 7 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.09 -3.27 5.41 30.59 0.17 -3.11 16 11 C 0.07 1.71 5.49 86.30 0.47 2.18 16 12 N -0.68 -13.46 6.26 -491.12 -3.07 -16.54 16 13 C 0.07 1.14 2.54 45.01 0.11 1.25 16 14 H 0.08 1.41 7.80 -2.38 -0.02 1.39 16 15 C -0.11 -1.42 5.65 30.73 0.17 -1.25 16 16 C -0.13 -1.86 6.03 29.71 0.18 -1.68 16 17 C 0.51 10.61 7.71 87.72 0.68 11.29 16 18 O -0.61 -18.13 17.78 -3.01 -0.05 -18.18 16 19 N -0.71 -11.48 5.45 -467.32 -2.55 -14.03 16 20 C 0.08 1.09 6.46 86.50 0.56 1.65 16 21 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 22 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 23 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 0.91 7.64 -2.39 -0.02 0.89 16 27 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 28 H 0.35 6.26 8.35 -89.69 -0.75 5.51 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.40 6.02 8.80 -92.71 -0.82 5.20 16 34 H 0.08 0.94 7.93 -2.39 -0.02 0.92 16 35 H 0.08 1.08 7.71 -2.39 -0.02 1.06 16 Total: -1.00 -70.83 286.33 -0.86 -71.69 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.54 Total: 11.02 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 3.17 Total: -19.71 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -5.32 Total: -90.10 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Total: -70.83 -0.86 -71.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082515895.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.480 kcal (2) G-P(sol) polarization free energy of solvation -70.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds