Wall clock time and date at job start Mon Mar 30 2020 03:26:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52994 * 109.47269 * 2 1
4 4 C 1.50701 * 109.46964 * 240.00214 * 2 1 3
5 5 H 1.07997 * 119.99925 * 240.00602 * 4 2 1
6 6 C 1.37874 * 119.99994 * 60.00121 * 4 2 1
7 7 N 1.31515 * 120.00185 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99983 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.47292 * 359.97438 * 8 6 4
10 10 H 1.48502 * 109.47218 * 119.99808 * 8 6 4
11 11 H 1.48501 * 109.47090 * 239.99939 * 8 6 4
12 12 C 1.50695 * 109.47019 * 120.00419 * 2 1 3
13 13 O 1.21284 * 120.00150 * 354.50472 * 12 2 1
14 14 N 1.34774 * 120.00181 * 174.78873 * 12 2 1
15 15 C 1.47086 * 120.87914 * 4.17852 * 14 12 2
16 16 C 1.52788 * 108.76288 * 231.12454 * 15 14 12
17 17 N 1.46901 * 109.42073 * 306.42172 * 16 15 14
18 18 C 1.46899 * 111.26665 * 62.97073 * 17 16 15
19 19 C 1.47073 * 120.88502 * 184.45656 * 14 12 2
20 20 H 1.09005 * 109.47086 * 304.94283 * 1 2 3
21 21 H 1.09000 * 109.46828 * 64.93699 * 1 2 3
22 22 H 1.08997 * 109.47255 * 184.94053 * 1 2 3
23 23 H 1.09000 * 109.47048 * 174.92563 * 3 2 1
24 24 H 1.08997 * 109.47689 * 294.92540 * 3 2 1
25 25 H 1.09003 * 109.47140 * 54.92922 * 3 2 1
26 26 H 0.96997 * 120.00013 * 180.02562 * 7 6 4
27 27 H 1.08996 * 109.62545 * 350.89454 * 15 14 12
28 28 H 1.08996 * 109.62679 * 111.47327 * 15 14 12
29 29 H 1.09001 * 109.56112 * 186.37131 * 16 15 14
30 30 H 1.08992 * 109.36154 * 66.35413 * 16 15 14
31 31 H 1.00909 * 110.99283 * 187.11634 * 17 16 15
32 32 H 1.09001 * 109.48666 * 176.93404 * 18 17 16
33 33 H 1.08994 * 109.51682 * 56.86693 * 18 17 16
34 34 H 1.09001 * 109.62963 * 248.52655 * 19 14 12
35 35 H 1.08998 * 109.62785 * 9.10677 * 19 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6531 -1.5885 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9436 0.8303 -2.6034
8 14 2.3213 -1.1202 -4.0080
9 1 3.1464 -2.2869 -3.6039
10 1 1.1659 -1.5865 -4.8161
11 1 3.1465 -0.1872 -4.8165
12 6 2.0323 -0.7105 1.2304
13 8 1.2487 -1.0836 2.0776
14 7 3.3528 -0.9263 1.3921
15 6 4.3280 -0.3974 0.4263
16 6 5.2490 -1.5339 -0.0146
17 7 5.8332 -2.1767 1.1702
18 6 4.7957 -2.7921 2.0085
19 6 3.8565 -1.7020 2.5356
20 1 -0.3633 0.5886 0.8424
21 1 -0.3633 0.4353 -0.9309
22 1 -0.3633 -1.0238 0.0885
23 1 3.1262 1.4437 0.0909
24 1 1.7529 1.9294 -0.9319
25 1 1.6044 1.9818 0.8411
26 1 0.7090 1.1615 -3.4843
27 1 3.8036 0.0045 -0.4406
28 1 4.9197 0.3880 0.8963
29 1 6.0460 -1.1352 -0.6422
30 1 4.6734 -2.2670 -0.5795
31 1 6.5333 -2.8537 0.9059
32 1 5.2640 -3.3059 2.8481
33 1 4.2259 -3.5078 1.4161
34 1 4.4022 -1.0443 3.2123
35 1 3.0207 -2.1622 3.0625
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082637545.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:49
Heat of formation + Delta-G solvation = -27.347218 kcal
Electronic energy + Delta-G solvation = -17088.516494 eV
Core-core repulsion = 14507.646990 eV
Total energy + Delta-G solvation = -2580.869503 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.55981 -36.97191 -34.87463 -32.95935 -31.22948 -30.38942 -26.17942 -25.71971
-25.33009 -23.11285 -21.96753 -19.81786 -18.09099 -17.11416 -15.80783 -15.35516
-14.93473 -14.48721 -14.22443 -14.18100 -13.74034 -13.10887 -12.93686 -12.27593
-11.70271 -11.53096 -11.39665 -11.10082 -10.98045 -10.92815 -10.69816 -10.59631
-10.52410 -10.26804 -10.21806 -9.67255 -8.94224 -8.52031 -8.47293 -8.32561
-7.77411 -6.13347 -4.25629 3.17909 3.27775 3.29099 3.75560 3.86827
4.29411 4.45428 5.09984 5.26656 5.38686 5.55084 5.64308 5.81206
5.93149 5.97340 6.15226 6.29303 6.46352 6.59516 6.64988 6.79609
6.91906 7.13919 7.14705 7.25242 7.38227 7.48498 7.52737 7.57216
7.89540 7.98199 8.23389 8.36562 8.71406 9.27392 9.38825 10.85943
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.025391 B = 0.012552 C = 0.009594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1102.487936 B = 2230.215653 C = 2917.890780
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C 0.052 3.948
3 C -0.140 4.140
4 C -0.510 4.510
5 H 0.062 0.938
6 C 0.071 3.929
7 N -0.875 5.875
8 Si 0.893 3.107
9 H -0.273 1.273
10 H -0.283 1.283
11 H -0.281 1.281
12 C 0.533 3.467
13 O -0.575 6.575
14 N -0.612 5.612
15 C 0.097 3.903
16 C 0.042 3.958
17 N -0.691 5.691
18 C 0.046 3.954
19 C 0.113 3.887
20 H 0.015 0.985
21 H 0.088 0.912
22 H 0.028 0.972
23 H 0.038 0.962
24 H 0.095 0.905
25 H 0.015 0.985
26 H 0.263 0.737
27 H 0.145 0.855
28 H 0.053 0.947
29 H 0.079 0.921
30 H 0.039 0.961
31 H 0.336 0.664
32 H 0.077 0.923
33 H 0.033 0.967
34 H 0.061 0.939
35 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.140 -2.776 3.049 9.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.049 3.951
3 C -0.198 4.198
4 C -0.548 4.548
5 H 0.080 0.920
6 C -0.132 4.132
7 N -0.512 5.512
8 Si 0.720 3.280
9 H -0.198 1.198
10 H -0.209 1.209
11 H -0.207 1.207
12 C 0.325 3.675
13 O -0.455 6.455
14 N -0.346 5.346
15 C -0.026 4.026
16 C -0.088 4.088
17 N -0.322 5.322
18 C -0.085 4.085
19 C -0.010 4.010
20 H 0.034 0.966
21 H 0.106 0.894
22 H 0.048 0.952
23 H 0.057 0.943
24 H 0.114 0.886
25 H 0.034 0.966
26 H 0.074 0.926
27 H 0.162 0.838
28 H 0.071 0.929
29 H 0.097 0.903
30 H 0.057 0.943
31 H 0.153 0.847
32 H 0.095 0.905
33 H 0.051 0.949
34 H 0.079 0.921
35 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 7.633 -2.259 3.713 8.783
hybrid contribution 0.249 -1.393 -1.336 1.946
sum 7.882 -3.652 2.377 9.006
Atomic orbital electron populations
1.21581 0.95513 0.99226 1.00988 1.18364 0.94474 0.93022 0.89281
1.22037 0.98570 0.96985 1.02197 1.20949 1.32136 1.12360 0.89373
0.92026 1.24899 0.94656 0.94868 0.98812 1.69813 1.35585 1.22314
1.23532 0.86523 0.78802 0.79719 0.82946 1.19805 1.20860 1.20735
1.21888 0.80253 0.77373 0.87970 1.90511 1.55372 1.53960 1.45612
1.48053 1.06655 1.54480 1.25412 1.22372 0.90246 0.94482 0.95512
1.22295 0.97709 0.97599 0.91161 1.60380 1.14907 1.35685 1.21237
1.22278 0.93235 0.95826 0.97133 1.21500 0.96821 0.93239 0.89486
0.96557 0.89374 0.95238 0.94332 0.88609 0.96603 0.92644 0.83821
0.92901 0.90283 0.94253 0.84709 0.90501 0.94909 0.92053 0.89612
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.93 7.62 37.16 0.28 -2.64 16
2 C 0.05 1.26 0.48 -156.82 -0.08 1.19 16
3 C -0.14 -3.21 8.01 37.15 0.30 -2.92 16
4 C -0.51 -12.72 5.55 -34.44 -0.19 -12.91 16
5 H 0.06 1.55 6.35 -52.49 -0.33 1.22 16
6 C 0.07 1.76 5.12 -17.82 -0.09 1.67 16
7 N -0.88 -22.43 9.30 55.43 0.52 -21.92 16
8 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16
9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16
12 C 0.53 12.84 6.44 -10.99 -0.07 12.77 16
13 O -0.58 -15.18 15.46 5.55 0.09 -15.09 16
14 N -0.61 -12.52 2.99 -172.74 -0.52 -13.03 16
15 C 0.10 1.78 4.19 -3.83 -0.02 1.77 16
16 C 0.04 0.67 6.63 -3.93 -0.03 0.65 16
17 N -0.69 -9.79 6.82 -113.77 -0.78 -10.57 16
18 C 0.05 0.67 6.70 -3.70 -0.02 0.64 16
19 C 0.11 1.98 6.59 -3.61 -0.02 1.95 16
20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
21 H 0.09 2.32 5.95 -51.93 -0.31 2.01 16
22 H 0.03 0.75 8.04 -51.93 -0.42 0.34 16
23 H 0.04 0.80 5.19 -51.93 -0.27 0.53 16
24 H 0.10 2.34 5.95 -51.93 -0.31 2.03 16
25 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16
26 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16
27 H 0.14 2.97 3.32 -51.93 -0.17 2.80 16
28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16
29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
30 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16
31 H 0.34 3.91 8.90 -39.29 -0.35 3.56 16
32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16
33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
35 H 0.09 1.58 7.09 -51.93 -0.37 1.21 16
LS Contribution 266.28 15.07 4.01 4.01
Total: -1.00 -28.07 266.28 -6.65 -34.72
By element:
Atomic # 1 Polarization: 10.20 SS G_CDS: -5.01 Total: 5.19 kcal
Atomic # 6 Polarization: 2.10 SS G_CDS: 0.06 Total: 2.16 kcal
Atomic # 7 Polarization: -44.74 SS G_CDS: -0.78 Total: -45.52 kcal
Atomic # 8 Polarization: -15.18 SS G_CDS: 0.09 Total: -15.09 kcal
Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal
Total LS contribution 4.01 Total: 4.01 kcal
Total: -28.07 -6.65 -34.72 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082637545.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.368 kcal
(2) G-P(sol) polarization free energy of solvation -28.069 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds