Wall clock time and date at job start Mon Mar 30 2020 03:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.50701 * 109.46964 * 240.00214 * 2 1 3 5 5 H 1.07997 * 119.99925 * 240.00602 * 4 2 1 6 6 C 1.37874 * 119.99994 * 60.00121 * 4 2 1 7 7 N 1.31515 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99983 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47292 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47218 * 119.99808 * 8 6 4 11 11 H 1.48501 * 109.47090 * 239.99939 * 8 6 4 12 12 C 1.50695 * 109.47019 * 120.00419 * 2 1 3 13 13 O 1.21284 * 120.00150 * 354.50472 * 12 2 1 14 14 N 1.34774 * 120.00181 * 174.78873 * 12 2 1 15 15 C 1.47086 * 120.87914 * 4.17852 * 14 12 2 16 16 C 1.52788 * 108.76288 * 231.12454 * 15 14 12 17 17 N 1.46901 * 109.42073 * 306.42172 * 16 15 14 18 18 C 1.46899 * 111.26665 * 62.97073 * 17 16 15 19 19 C 1.47073 * 120.88502 * 184.45656 * 14 12 2 20 20 H 1.09005 * 109.47086 * 304.94283 * 1 2 3 21 21 H 1.09000 * 109.46828 * 64.93699 * 1 2 3 22 22 H 1.08997 * 109.47255 * 184.94053 * 1 2 3 23 23 H 1.09000 * 109.47048 * 174.92563 * 3 2 1 24 24 H 1.08997 * 109.47689 * 294.92540 * 3 2 1 25 25 H 1.09003 * 109.47140 * 54.92922 * 3 2 1 26 26 H 0.96997 * 120.00013 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.62545 * 350.89454 * 15 14 12 28 28 H 1.08996 * 109.62679 * 111.47327 * 15 14 12 29 29 H 1.09001 * 109.56112 * 186.37131 * 16 15 14 30 30 H 1.08992 * 109.36154 * 66.35413 * 16 15 14 31 31 H 1.00909 * 110.99283 * 187.11634 * 17 16 15 32 32 H 1.09001 * 109.48666 * 176.93404 * 18 17 16 33 33 H 1.08994 * 109.51682 * 56.86693 * 18 17 16 34 34 H 1.09001 * 109.62963 * 248.52655 * 19 14 12 35 35 H 1.08998 * 109.62785 * 9.10677 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1464 -2.2869 -3.6039 10 1 1.1659 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0323 -0.7105 1.2304 13 8 1.2487 -1.0836 2.0776 14 7 3.3528 -0.9263 1.3921 15 6 4.3280 -0.3974 0.4263 16 6 5.2490 -1.5339 -0.0146 17 7 5.8332 -2.1767 1.1702 18 6 4.7957 -2.7921 2.0085 19 6 3.8565 -1.7020 2.5356 20 1 -0.3633 0.5886 0.8424 21 1 -0.3633 0.4353 -0.9309 22 1 -0.3633 -1.0238 0.0885 23 1 3.1262 1.4437 0.0909 24 1 1.7529 1.9294 -0.9319 25 1 1.6044 1.9818 0.8411 26 1 0.7090 1.1615 -3.4843 27 1 3.8036 0.0045 -0.4406 28 1 4.9197 0.3880 0.8963 29 1 6.0460 -1.1352 -0.6422 30 1 4.6734 -2.2670 -0.5795 31 1 6.5333 -2.8537 0.9059 32 1 5.2640 -3.3059 2.8481 33 1 4.2259 -3.5078 1.4161 34 1 4.4022 -1.0443 3.2123 35 1 3.0207 -2.1622 3.0625 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082637545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:49 Heat of formation + Delta-G solvation = -27.347218 kcal Electronic energy + Delta-G solvation = -17088.516494 eV Core-core repulsion = 14507.646990 eV Total energy + Delta-G solvation = -2580.869503 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55981 -36.97191 -34.87463 -32.95935 -31.22948 -30.38942 -26.17942 -25.71971 -25.33009 -23.11285 -21.96753 -19.81786 -18.09099 -17.11416 -15.80783 -15.35516 -14.93473 -14.48721 -14.22443 -14.18100 -13.74034 -13.10887 -12.93686 -12.27593 -11.70271 -11.53096 -11.39665 -11.10082 -10.98045 -10.92815 -10.69816 -10.59631 -10.52410 -10.26804 -10.21806 -9.67255 -8.94224 -8.52031 -8.47293 -8.32561 -7.77411 -6.13347 -4.25629 3.17909 3.27775 3.29099 3.75560 3.86827 4.29411 4.45428 5.09984 5.26656 5.38686 5.55084 5.64308 5.81206 5.93149 5.97340 6.15226 6.29303 6.46352 6.59516 6.64988 6.79609 6.91906 7.13919 7.14705 7.25242 7.38227 7.48498 7.52737 7.57216 7.89540 7.98199 8.23389 8.36562 8.71406 9.27392 9.38825 10.85943 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.012552 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.487936 B = 2230.215653 C = 2917.890780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.052 3.948 3 C -0.140 4.140 4 C -0.510 4.510 5 H 0.062 0.938 6 C 0.071 3.929 7 N -0.875 5.875 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.533 3.467 13 O -0.575 6.575 14 N -0.612 5.612 15 C 0.097 3.903 16 C 0.042 3.958 17 N -0.691 5.691 18 C 0.046 3.954 19 C 0.113 3.887 20 H 0.015 0.985 21 H 0.088 0.912 22 H 0.028 0.972 23 H 0.038 0.962 24 H 0.095 0.905 25 H 0.015 0.985 26 H 0.263 0.737 27 H 0.145 0.855 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.336 0.664 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -2.776 3.049 9.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.049 3.951 3 C -0.198 4.198 4 C -0.548 4.548 5 H 0.080 0.920 6 C -0.132 4.132 7 N -0.512 5.512 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.325 3.675 13 O -0.455 6.455 14 N -0.346 5.346 15 C -0.026 4.026 16 C -0.088 4.088 17 N -0.322 5.322 18 C -0.085 4.085 19 C -0.010 4.010 20 H 0.034 0.966 21 H 0.106 0.894 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.114 0.886 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.162 0.838 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.153 0.847 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.633 -2.259 3.713 8.783 hybrid contribution 0.249 -1.393 -1.336 1.946 sum 7.882 -3.652 2.377 9.006 Atomic orbital electron populations 1.21581 0.95513 0.99226 1.00988 1.18364 0.94474 0.93022 0.89281 1.22037 0.98570 0.96985 1.02197 1.20949 1.32136 1.12360 0.89373 0.92026 1.24899 0.94656 0.94868 0.98812 1.69813 1.35585 1.22314 1.23532 0.86523 0.78802 0.79719 0.82946 1.19805 1.20860 1.20735 1.21888 0.80253 0.77373 0.87970 1.90511 1.55372 1.53960 1.45612 1.48053 1.06655 1.54480 1.25412 1.22372 0.90246 0.94482 0.95512 1.22295 0.97709 0.97599 0.91161 1.60380 1.14907 1.35685 1.21237 1.22278 0.93235 0.95826 0.97133 1.21500 0.96821 0.93239 0.89486 0.96557 0.89374 0.95238 0.94332 0.88609 0.96603 0.92644 0.83821 0.92901 0.90283 0.94253 0.84709 0.90501 0.94909 0.92053 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.93 7.62 37.16 0.28 -2.64 16 2 C 0.05 1.26 0.48 -156.82 -0.08 1.19 16 3 C -0.14 -3.21 8.01 37.15 0.30 -2.92 16 4 C -0.51 -12.72 5.55 -34.44 -0.19 -12.91 16 5 H 0.06 1.55 6.35 -52.49 -0.33 1.22 16 6 C 0.07 1.76 5.12 -17.82 -0.09 1.67 16 7 N -0.88 -22.43 9.30 55.43 0.52 -21.92 16 8 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 12 C 0.53 12.84 6.44 -10.99 -0.07 12.77 16 13 O -0.58 -15.18 15.46 5.55 0.09 -15.09 16 14 N -0.61 -12.52 2.99 -172.74 -0.52 -13.03 16 15 C 0.10 1.78 4.19 -3.83 -0.02 1.77 16 16 C 0.04 0.67 6.63 -3.93 -0.03 0.65 16 17 N -0.69 -9.79 6.82 -113.77 -0.78 -10.57 16 18 C 0.05 0.67 6.70 -3.70 -0.02 0.64 16 19 C 0.11 1.98 6.59 -3.61 -0.02 1.95 16 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.09 2.32 5.95 -51.93 -0.31 2.01 16 22 H 0.03 0.75 8.04 -51.93 -0.42 0.34 16 23 H 0.04 0.80 5.19 -51.93 -0.27 0.53 16 24 H 0.10 2.34 5.95 -51.93 -0.31 2.03 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 27 H 0.14 2.97 3.32 -51.93 -0.17 2.80 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 31 H 0.34 3.91 8.90 -39.29 -0.35 3.56 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.58 7.09 -51.93 -0.37 1.21 16 LS Contribution 266.28 15.07 4.01 4.01 Total: -1.00 -28.07 266.28 -6.65 -34.72 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.01 Total: 5.19 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 0.06 Total: 2.16 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.78 Total: -45.52 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.09 Total: -15.09 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.07 -6.65 -34.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082637545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.368 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds