Wall clock time and date at job start Mon Mar 30 2020 03:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.50701 * 109.46964 * 240.00214 * 2 1 3 5 5 H 1.07997 * 119.99925 * 240.00602 * 4 2 1 6 6 C 1.37874 * 119.99994 * 60.00121 * 4 2 1 7 7 N 1.31515 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99983 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47292 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47218 * 119.99808 * 8 6 4 11 11 H 1.48501 * 109.47090 * 239.99939 * 8 6 4 12 12 C 1.50695 * 109.47019 * 120.00419 * 2 1 3 13 13 O 1.21284 * 120.00150 * 354.50472 * 12 2 1 14 14 N 1.34774 * 120.00181 * 174.78873 * 12 2 1 15 15 C 1.47086 * 120.87914 * 4.17852 * 14 12 2 16 16 C 1.52788 * 108.76288 * 231.12454 * 15 14 12 17 17 N 1.46901 * 109.42073 * 306.42172 * 16 15 14 18 18 C 1.46899 * 111.26665 * 62.97073 * 17 16 15 19 19 C 1.47073 * 120.88502 * 184.45656 * 14 12 2 20 20 H 1.09005 * 109.47086 * 304.94283 * 1 2 3 21 21 H 1.09000 * 109.46828 * 64.93699 * 1 2 3 22 22 H 1.08997 * 109.47255 * 184.94053 * 1 2 3 23 23 H 1.09000 * 109.47048 * 174.92563 * 3 2 1 24 24 H 1.08997 * 109.47689 * 294.92540 * 3 2 1 25 25 H 1.09003 * 109.47140 * 54.92922 * 3 2 1 26 26 H 0.96997 * 120.00013 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.62545 * 350.89454 * 15 14 12 28 28 H 1.08996 * 109.62679 * 111.47327 * 15 14 12 29 29 H 1.09001 * 109.56112 * 186.37131 * 16 15 14 30 30 H 1.08992 * 109.36154 * 66.35413 * 16 15 14 31 31 H 1.00909 * 110.99283 * 187.11634 * 17 16 15 32 32 H 1.09001 * 109.48666 * 176.93404 * 18 17 16 33 33 H 1.08994 * 109.51682 * 56.86693 * 18 17 16 34 34 H 1.09001 * 109.62963 * 248.52655 * 19 14 12 35 35 H 1.08998 * 109.62785 * 9.10677 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1464 -2.2869 -3.6039 10 1 1.1659 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0323 -0.7105 1.2304 13 8 1.2487 -1.0836 2.0776 14 7 3.3528 -0.9263 1.3921 15 6 4.3280 -0.3974 0.4263 16 6 5.2490 -1.5339 -0.0146 17 7 5.8332 -2.1767 1.1702 18 6 4.7957 -2.7921 2.0085 19 6 3.8565 -1.7020 2.5356 20 1 -0.3633 0.5886 0.8424 21 1 -0.3633 0.4353 -0.9309 22 1 -0.3633 -1.0238 0.0885 23 1 3.1262 1.4437 0.0909 24 1 1.7529 1.9294 -0.9319 25 1 1.6044 1.9818 0.8411 26 1 0.7090 1.1615 -3.4843 27 1 3.8036 0.0045 -0.4406 28 1 4.9197 0.3880 0.8963 29 1 6.0460 -1.1352 -0.6422 30 1 4.6734 -2.2670 -0.5795 31 1 6.5333 -2.8537 0.9059 32 1 5.2640 -3.3059 2.8481 33 1 4.2259 -3.5078 1.4161 34 1 4.4022 -1.0443 3.2123 35 1 3.0207 -2.1622 3.0625 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082637545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:49 Heat of formation + Delta-G solvation = -46.880206 kcal Electronic energy + Delta-G solvation = -17089.363507 eV Core-core repulsion = 14507.646990 eV Total energy + Delta-G solvation = -2581.716517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26133 -38.48864 -36.78314 -34.48011 -33.03435 -31.86717 -27.73769 -27.60303 -27.27108 -24.51815 -23.62682 -21.36316 -19.77307 -18.85634 -17.44604 -17.15456 -16.42617 -15.98757 -15.95718 -15.55756 -15.18879 -14.81810 -14.68671 -13.90356 -13.49359 -13.28483 -13.07100 -12.87583 -12.71931 -12.49538 -12.43348 -12.19928 -12.12085 -12.04319 -11.96809 -11.56723 -10.86837 -10.43643 -10.23108 -9.77836 -9.24797 -8.04396 -6.21816 1.44379 1.49301 1.57145 1.91255 2.29156 2.46339 3.16744 3.29903 3.91538 4.10990 4.15124 4.34135 4.44328 4.48396 4.67795 4.69484 4.78109 4.83557 4.90852 5.05489 5.07128 5.12192 5.19527 5.35251 5.49268 5.60122 5.74542 5.88896 5.97374 6.05377 6.27296 6.46121 6.65036 6.76687 7.41162 7.48204 8.94864 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.012552 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.487936 B = 2230.215653 C = 2917.890780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.043 3.957 3 C -0.129 4.129 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.034 3.966 7 N -0.896 5.896 8 Si 0.950 3.050 9 H -0.270 1.270 10 H -0.290 1.290 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.609 6.609 14 N -0.609 5.609 15 C 0.092 3.908 16 C 0.048 3.952 17 N -0.683 5.683 18 C 0.053 3.947 19 C 0.107 3.893 20 H 0.015 0.985 21 H 0.077 0.923 22 H 0.012 0.988 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.015 0.985 26 H 0.265 0.735 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.018 0.982 31 H 0.356 0.644 32 H 0.113 0.887 33 H 0.017 0.983 34 H 0.078 0.922 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 -3.326 2.935 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.040 3.960 3 C -0.186 4.186 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.534 5.534 8 Si 0.776 3.224 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.198 1.198 12 C 0.316 3.684 13 O -0.492 6.492 14 N -0.341 5.341 15 C -0.030 4.030 16 C -0.082 4.082 17 N -0.316 5.316 18 C -0.077 4.077 19 C -0.016 4.016 20 H 0.034 0.966 21 H 0.095 0.905 22 H 0.032 0.968 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.140 0.860 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.037 0.963 31 H 0.175 0.825 32 H 0.131 0.869 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.014 -2.818 3.597 11.008 hybrid contribution -0.456 -1.213 -1.255 1.804 sum 9.559 -4.031 2.342 10.635 Atomic orbital electron populations 1.21484 0.96858 0.97933 1.00251 1.18408 0.93611 0.94102 0.89882 1.21895 0.99673 0.95799 1.01275 1.20958 1.32186 1.12198 0.89743 0.92542 1.25480 0.94790 0.95403 1.00988 1.69906 1.36198 1.23181 1.24101 0.85624 0.78051 0.78890 0.79804 1.19416 1.21597 1.19819 1.21778 0.81537 0.77548 0.87518 1.90482 1.56585 1.55587 1.46559 1.48101 1.05792 1.53812 1.26374 1.22407 0.90079 0.96030 0.94454 1.22193 0.97781 0.96353 0.91832 1.60329 1.14707 1.36322 1.20245 1.22235 0.92908 0.94422 0.98165 1.21734 0.97069 0.94032 0.88766 0.96612 0.90464 0.96840 0.92533 0.90157 0.96578 0.92545 0.85969 0.91244 0.87630 0.96343 0.82456 0.86919 0.96453 0.90402 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 7.62 71.98 0.55 -5.04 16 2 C 0.04 2.13 0.48 -53.68 -0.03 2.10 16 3 C -0.13 -5.89 8.01 71.98 0.58 -5.31 16 4 C -0.51 -25.55 5.55 25.60 0.14 -25.41 16 5 H 0.06 2.83 6.35 -2.91 -0.02 2.81 16 6 C 0.03 1.70 5.12 84.65 0.43 2.13 16 7 N -0.90 -46.03 9.30 21.45 0.20 -45.83 16 8 Si 0.95 39.61 29.54 68.60 2.03 41.64 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 C 0.52 25.37 6.44 87.66 0.56 25.93 16 13 O -0.61 -32.70 15.46 -3.04 -0.05 -32.74 16 14 N -0.61 -24.25 2.99 -818.83 -2.45 -26.69 16 15 C 0.09 3.23 4.19 86.20 0.36 3.59 16 16 C 0.05 1.41 6.63 86.23 0.57 1.98 16 17 N -0.68 -16.84 6.82 -513.85 -3.50 -20.34 16 18 C 0.05 1.40 6.70 86.38 0.58 1.97 16 19 C 0.11 3.53 6.59 86.35 0.57 4.10 16 20 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 21 H 0.08 4.16 5.95 -2.39 -0.01 4.15 16 22 H 0.01 0.68 8.04 -2.39 -0.02 0.66 16 23 H 0.06 2.32 5.19 -2.39 -0.01 2.31 16 24 H 0.08 3.94 5.95 -2.39 -0.01 3.93 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 27 H 0.12 4.89 3.32 -2.39 -0.01 4.89 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.02 0.62 7.44 -2.39 -0.02 0.60 16 31 H 0.36 6.77 8.90 -89.69 -0.80 5.97 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.57 7.09 -2.39 -0.02 2.55 16 Total: -1.00 -59.74 266.28 0.84 -58.89 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.30 Total: 19.02 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 4.32 Total: 6.05 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -5.75 Total: -92.86 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.74 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -59.74 0.84 -58.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082637545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.014 kcal (2) G-P(sol) polarization free energy of solvation -59.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds