Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48508 * 109.47108 * 269.99934 * 3 2 1 5 5 H 1.48498 * 109.47121 * 30.00219 * 3 2 1 6 6 H 1.48496 * 109.47055 * 150.00569 * 3 2 1 7 7 C 1.38944 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00694 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00219 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00115 * 179.97438 * 10 9 7 13 13 H 1.08992 * 109.47284 * 60.00252 * 12 10 9 14 14 C 1.52996 * 109.46990 * 299.99704 * 12 10 9 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 12 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 20 20 C 1.52996 * 109.46975 * 180.02562 * 18 17 16 21 21 N 1.46906 * 109.47278 * 294.99880 * 20 18 17 22 22 H 0.97002 * 120.00214 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00141 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.47368 * 60.00232 * 14 12 10 25 25 H 1.09001 * 109.47372 * 300.00388 * 14 12 10 26 26 H 1.09002 * 109.47398 * 180.02562 * 15 14 12 27 27 H 1.09001 * 109.47194 * 300.00476 * 15 14 12 28 28 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 31 31 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.47611 * 54.99598 * 20 18 17 33 33 H 1.09001 * 109.47165 * 175.00100 * 20 18 17 34 34 H 1.00901 * 110.99671 * 56.04441 * 21 20 18 35 35 H 1.00899 * 111.00083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.6999 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 1 0.6170 -4.9209 -0.8886 14 6 0.3649 -4.9437 1.2507 15 6 -0.3996 -6.2690 1.2517 16 6 0.5951 -7.4315 1.2519 17 6 1.4743 -7.3507 0.0023 18 6 2.2387 -6.0254 0.0014 19 1 2.8657 -5.9669 0.8911 20 6 3.1173 -5.9444 -1.2485 21 7 4.1494 -6.9882 -1.1902 22 1 -0.4850 0.8400 0.0004 23 1 0.3535 -2.3906 0.0005 24 1 -0.3435 -4.1152 1.2509 25 1 0.9919 -4.8857 2.1405 26 1 -1.0262 -6.3264 2.1418 27 1 -1.0265 -6.3275 0.3620 28 1 1.2221 -7.3731 2.1416 29 1 0.0506 -8.3757 1.2522 30 1 0.8473 -7.4092 -0.8875 31 1 2.1832 -8.1787 0.0026 32 1 2.5016 -6.0915 -2.1358 33 1 3.5935 -4.9650 -1.2951 34 1 3.7342 -7.9014 -1.0816 35 1 4.7434 -6.9553 -2.0051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084302242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = -67.242778 kcal Electronic energy + Delta-G solvation = -16290.865768 eV Core-core repulsion = 13708.266263 eV Total energy + Delta-G solvation = -2582.599505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49007 -36.99120 -34.43631 -33.74951 -31.39233 -30.43012 -29.81526 -25.34356 -24.12551 -22.79598 -20.61232 -19.81048 -18.84896 -17.83106 -16.01295 -15.67508 -14.85431 -14.56069 -14.23329 -13.98305 -13.82095 -13.41490 -13.24736 -13.09911 -12.12046 -12.02803 -11.67517 -11.45716 -11.11581 -11.03885 -10.86816 -10.71010 -10.37463 -10.25585 -10.20695 -9.96592 -9.76431 -9.42521 -8.36634 -8.10228 -7.90428 -6.39521 -3.79916 3.18931 3.27542 3.33782 3.93494 4.19465 4.81915 4.86226 5.00169 5.03145 5.27563 5.29731 5.48279 5.67615 5.71981 5.74461 5.77839 5.81835 5.92362 6.04272 6.18748 6.25824 6.33702 6.37353 6.46755 6.55017 6.61181 6.88926 6.94732 7.49926 7.57467 7.74823 8.09455 8.64785 9.20688 9.58765 10.10670 10.78182 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.007443 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.802798 B = 3760.860893 C = 4395.326030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.444 3.556 11 O -0.587 6.587 12 C -0.093 4.093 13 H 0.077 0.923 14 C -0.109 4.109 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.057 4.057 19 H 0.082 0.918 20 C 0.054 3.946 21 N -0.847 5.847 22 H 0.271 0.729 23 H 0.392 0.608 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.009 0.991 33 H 0.111 0.889 34 H 0.327 0.673 35 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -12.150 -0.372 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.230 3.770 11 O -0.472 6.472 12 C -0.115 4.115 13 H 0.095 0.905 14 C -0.147 4.147 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.076 4.076 19 H 0.100 0.900 20 C -0.076 4.076 21 N -0.376 5.376 22 H 0.081 0.919 23 H 0.225 0.775 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.894 -11.579 0.289 11.617 hybrid contribution -0.776 0.529 -0.933 1.324 sum -1.670 -11.050 -0.645 11.194 Atomic orbital electron populations 1.69613 1.05930 1.28098 1.50696 1.25252 0.95608 0.99690 0.97381 0.85881 0.79277 0.80919 0.78359 1.20451 1.20944 1.19418 1.19731 0.93395 0.82395 1.47436 0.87935 1.41928 1.09198 1.04654 1.63876 1.19912 0.88204 0.84863 0.83996 1.90457 1.13867 1.87017 1.55894 1.21168 0.97035 0.94288 0.99008 0.90464 1.21518 0.98277 0.97293 0.97654 1.21540 0.97614 0.94775 1.01533 1.21518 0.97716 0.97796 0.98474 1.21649 0.98168 0.97762 0.97849 1.20812 0.94949 0.92181 0.99670 0.90012 1.22244 0.92652 0.97925 0.94815 1.58759 1.24464 1.07218 1.47161 0.91912 0.77453 0.91317 0.91656 0.92168 0.92137 0.91973 0.92569 0.92608 0.92143 0.97236 0.87157 0.86046 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.33 5.18 -10.97 -0.06 -14.38 16 10 C 0.44 10.50 6.78 -10.98 -0.07 10.42 16 11 O -0.59 -15.71 13.24 5.55 0.07 -15.64 16 12 C -0.09 -1.68 2.06 -91.77 -0.19 -1.87 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 14 C -0.11 -1.76 5.10 -26.73 -0.14 -1.89 16 15 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 16 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 17 C -0.12 -1.51 4.97 -26.73 -0.13 -1.64 16 18 C -0.06 -0.95 1.57 -90.62 -0.14 -1.09 16 19 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 20 C 0.05 0.92 5.98 -3.82 -0.02 0.89 16 21 N -0.85 -12.31 9.62 -10.37 -0.10 -12.41 16 22 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 23 H 0.39 9.66 7.32 -40.82 -0.30 9.36 16 24 H 0.07 1.14 7.57 -51.93 -0.39 0.75 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.11 2.35 5.41 -51.93 -0.28 2.07 16 34 H 0.33 4.00 7.25 -39.29 -0.28 3.71 16 35 H 0.33 4.27 9.08 -39.29 -0.36 3.91 16 LS Contribution 277.45 15.07 4.18 4.18 Total: -1.00 -30.06 277.45 -6.73 -36.79 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -5.27 Total: 15.69 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.26 Total: -6.45 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.57 Total: -50.78 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.07 Total: -15.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.06 -6.73 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084302242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.452 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds