Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48508 * 109.47108 * 269.99934 * 3 2 1 5 5 H 1.48498 * 109.47121 * 30.00219 * 3 2 1 6 6 H 1.48496 * 109.47055 * 150.00569 * 3 2 1 7 7 C 1.38944 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00694 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00219 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00115 * 179.97438 * 10 9 7 13 13 H 1.08992 * 109.47284 * 60.00252 * 12 10 9 14 14 C 1.52996 * 109.46990 * 299.99704 * 12 10 9 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 12 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 20 20 C 1.52996 * 109.46975 * 180.02562 * 18 17 16 21 21 N 1.46906 * 109.47278 * 294.99880 * 20 18 17 22 22 H 0.97002 * 120.00214 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00141 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.47368 * 60.00232 * 14 12 10 25 25 H 1.09001 * 109.47372 * 300.00388 * 14 12 10 26 26 H 1.09002 * 109.47398 * 180.02562 * 15 14 12 27 27 H 1.09001 * 109.47194 * 300.00476 * 15 14 12 28 28 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 31 31 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.47611 * 54.99598 * 20 18 17 33 33 H 1.09001 * 109.47165 * 175.00100 * 20 18 17 34 34 H 1.00901 * 110.99671 * 56.04441 * 21 20 18 35 35 H 1.00899 * 111.00083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.6999 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 1 0.6170 -4.9209 -0.8886 14 6 0.3649 -4.9437 1.2507 15 6 -0.3996 -6.2690 1.2517 16 6 0.5951 -7.4315 1.2519 17 6 1.4743 -7.3507 0.0023 18 6 2.2387 -6.0254 0.0014 19 1 2.8657 -5.9669 0.8911 20 6 3.1173 -5.9444 -1.2485 21 7 4.1494 -6.9882 -1.1902 22 1 -0.4850 0.8400 0.0004 23 1 0.3535 -2.3906 0.0005 24 1 -0.3435 -4.1152 1.2509 25 1 0.9919 -4.8857 2.1405 26 1 -1.0262 -6.3264 2.1418 27 1 -1.0265 -6.3275 0.3620 28 1 1.2221 -7.3731 2.1416 29 1 0.0506 -8.3757 1.2522 30 1 0.8473 -7.4092 -0.8875 31 1 2.1832 -8.1787 0.0026 32 1 2.5016 -6.0915 -2.1358 33 1 3.5935 -4.9650 -1.2951 34 1 3.7342 -7.9014 -1.0816 35 1 4.7434 -6.9553 -2.0051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084302242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = -89.200818 kcal Electronic energy + Delta-G solvation = -16291.817940 eV Core-core repulsion = 13708.266263 eV Total energy + Delta-G solvation = -2583.551677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06840 -38.61093 -36.09967 -35.37433 -33.32328 -31.86905 -31.01238 -27.22601 -25.51563 -24.20270 -21.87205 -21.21200 -20.50038 -19.83146 -17.75240 -17.00502 -16.64749 -16.02735 -15.80448 -15.56903 -15.20830 -14.84218 -14.75068 -14.32198 -13.73970 -13.53106 -13.26681 -12.92649 -12.84149 -12.42777 -12.38399 -12.15523 -12.10217 -11.90064 -11.51981 -11.38464 -11.22500 -10.95615 -10.04820 -9.97821 -9.49431 -8.47166 -5.95716 1.36305 1.39738 1.52760 2.05716 2.29135 3.18327 3.22263 3.59808 3.83369 3.92926 4.01635 4.24252 4.41604 4.47783 4.51062 4.55357 4.59604 4.61397 4.73575 4.96667 5.05455 5.20048 5.25455 5.31880 5.35899 5.38252 5.40035 5.55895 5.62111 6.01298 6.31328 6.59676 6.71828 7.12672 7.57263 8.13444 8.70326 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.007443 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.802798 B = 3760.860893 C = 4395.326030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.440 3.560 11 O -0.622 6.622 12 C -0.084 4.084 13 H 0.093 0.907 14 C -0.107 4.107 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.052 4.052 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.851 5.851 22 H 0.278 0.722 23 H 0.395 0.605 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.345 0.655 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -13.586 -0.541 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.208 5.208 10 C 0.228 3.772 11 O -0.510 6.510 12 C -0.106 4.106 13 H 0.111 0.889 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.153 4.153 17 C -0.146 4.146 18 C -0.072 4.072 19 H 0.069 0.931 20 C -0.072 4.072 21 N -0.383 5.383 22 H 0.087 0.913 23 H 0.229 0.771 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.051 -13.042 0.116 13.202 hybrid contribution -0.373 0.947 -0.889 1.351 sum -2.424 -12.095 -0.772 12.360 Atomic orbital electron populations 1.69674 1.06818 1.29264 1.50403 1.26028 0.96537 1.02367 0.96305 0.84951 0.77879 0.76967 0.78677 1.19575 1.19416 1.19896 1.19691 0.92686 0.84219 1.49892 0.90431 1.41992 1.09218 1.04752 1.64798 1.21000 0.88146 0.86263 0.81765 1.90443 1.15834 1.87881 1.56795 1.21183 0.97290 0.91375 1.00769 0.88898 1.21499 0.97743 0.99558 0.95675 1.21524 0.97612 0.92548 1.03089 1.21534 0.97446 0.98774 0.97557 1.21609 0.98448 0.95384 0.99137 1.20765 0.94548 0.93867 0.97985 0.93063 1.21980 0.93078 0.96451 0.95721 1.58633 1.24057 1.07568 1.47995 0.91295 0.77147 0.92277 0.93287 0.90443 0.90765 0.92659 0.89521 0.91112 0.90462 0.95846 0.91932 0.84085 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 13.05 21.66 0.28 -50.27 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.34 -19.52 9.68 84.04 0.81 -18.71 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -30.25 5.18 -306.99 -1.59 -31.84 16 10 C 0.44 21.61 6.78 87.66 0.59 22.20 16 11 O -0.62 -35.10 13.24 -3.06 -0.04 -35.14 16 12 C -0.08 -3.04 2.06 -11.54 -0.02 -3.06 16 13 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 14 C -0.11 -3.36 5.10 30.59 0.16 -3.20 16 15 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 16 C -0.12 -2.36 5.92 30.60 0.18 -2.18 16 17 C -0.11 -2.45 4.97 30.60 0.15 -2.30 16 18 C -0.05 -1.70 1.57 -10.80 -0.02 -1.72 16 19 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 20 C 0.06 1.99 5.98 86.30 0.52 2.50 16 21 N -0.85 -23.79 9.62 -186.71 -1.80 -25.58 16 22 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 23 H 0.39 20.01 7.32 -92.71 -0.68 19.33 16 24 H 0.06 1.95 7.57 -2.39 -0.02 1.94 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.52 6.68 -2.39 -0.02 1.51 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 2.77 5.41 -2.39 -0.01 2.76 16 34 H 0.34 7.59 7.25 -89.69 -0.65 6.94 16 35 H 0.34 8.45 9.08 -89.69 -0.81 7.63 16 Total: -1.00 -67.07 277.45 0.87 -66.20 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -1.03 Total: 39.81 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 3.02 Total: -8.98 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -3.10 Total: -107.69 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.04 Total: -35.14 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.07 0.87 -66.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084302242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.997 kcal (2) G-P(sol) polarization free energy of solvation -67.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds