Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 14 14 C 1.53001 * 109.47207 * 299.99218 * 12 10 9 15 15 C 1.53003 * 109.47453 * 300.00575 * 14 12 10 16 16 C 1.52999 * 109.46917 * 299.99643 * 15 14 12 17 17 C 1.53007 * 109.46946 * 60.00202 * 16 15 14 18 18 C 1.52999 * 109.47004 * 179.97438 * 12 10 9 19 19 H 1.08998 * 109.47611 * 179.97438 * 18 12 10 20 20 C 1.52998 * 109.47363 * 300.00059 * 18 12 10 21 21 N 1.46902 * 109.47374 * 185.00052 * 20 18 12 22 22 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47038 * 60.00421 * 14 12 10 25 25 H 1.08995 * 109.47475 * 180.02562 * 14 12 10 26 26 H 1.09003 * 109.47092 * 59.99545 * 15 14 12 27 27 H 1.08995 * 109.47357 * 179.97438 * 15 14 12 28 28 H 1.08993 * 109.47209 * 179.97438 * 16 15 14 29 29 H 1.08998 * 109.47611 * 299.99858 * 16 15 14 30 30 H 1.08990 * 109.47379 * 59.99681 * 17 16 15 31 31 H 1.09002 * 109.46846 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46940 * 304.99754 * 20 18 12 33 33 H 1.09000 * 109.47136 * 64.99536 * 20 18 12 34 34 H 1.00904 * 110.99700 * 179.97438 * 21 20 18 35 35 H 1.00900 * 110.99469 * 303.95167 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 1 0.6174 -4.9252 -0.8769 14 6 0.3637 -4.9377 1.2623 15 6 1.2428 -4.8504 2.5115 16 6 2.2370 -6.0133 2.5177 17 6 3.1171 -5.9385 1.2683 18 6 2.2379 -6.0258 0.0186 19 1 1.6929 -6.9698 0.0236 20 6 3.1176 -5.9509 -1.2309 21 7 3.9901 -7.1314 -1.2871 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 -0.3447 -4.1092 1.2579 25 1 -0.1811 -5.8818 1.2671 26 1 1.7879 -3.9064 2.5069 27 1 0.6158 -4.9032 3.4015 28 1 2.8636 -5.9509 3.4073 29 1 1.6921 -6.9573 2.5222 30 1 3.6621 -4.9946 1.2638 31 1 3.8251 -6.7673 1.2725 32 1 2.4859 -5.9234 -2.1188 33 1 3.7285 -5.0490 -1.1916 34 1 4.5813 -7.1055 -2.1045 35 1 4.5400 -7.2149 -0.4452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084302252.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = -63.192360 kcal Electronic energy + Delta-G solvation = -16628.304147 eV Core-core repulsion = 14045.880282 eV Total energy + Delta-G solvation = -2582.423866 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75287 -36.52681 -34.34009 -33.75690 -31.45991 -30.37217 -29.58229 -25.29385 -24.11054 -22.61295 -20.58979 -20.26925 -18.49247 -17.60351 -15.80833 -15.65540 -14.80610 -14.68368 -14.29651 -13.99277 -13.75202 -13.11486 -13.03075 -12.77487 -12.32513 -11.71760 -11.60706 -11.43340 -11.19573 -11.10787 -10.88446 -10.50467 -10.45629 -10.22304 -10.19662 -9.65807 -9.55465 -9.43157 -8.46421 -7.95522 -7.85839 -6.41564 -3.82125 3.18599 3.24683 3.28704 3.92631 4.17139 4.87756 4.93674 5.15041 5.19564 5.34279 5.40999 5.63538 5.76320 5.77793 5.92560 5.93721 6.02283 6.13762 6.23465 6.34281 6.37186 6.44711 6.56022 6.68485 6.73086 6.77104 6.82810 7.13029 7.48796 7.55072 7.73586 8.07151 8.62890 9.18375 9.57000 10.08751 10.75999 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.008153 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.457609 B = 3433.295067 C = 3785.210715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.560 5.560 10 C 0.452 3.548 11 O -0.589 6.589 12 C -0.099 4.099 13 H 0.078 0.922 14 C -0.106 4.106 15 C -0.120 4.120 16 C -0.113 4.113 17 C -0.128 4.128 18 C -0.052 4.052 19 H 0.065 0.935 20 C 0.050 3.950 21 N -0.856 5.856 22 H 0.272 0.728 23 H 0.392 0.608 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.333 0.667 35 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -9.404 1.705 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.430 4.430 8 H 0.119 0.881 9 N -0.195 5.195 10 C 0.238 3.762 11 O -0.476 6.476 12 C -0.121 4.121 13 H 0.096 0.904 14 C -0.144 4.144 15 C -0.158 4.158 16 C -0.150 4.150 17 C -0.166 4.166 18 C -0.071 4.071 19 H 0.084 0.916 20 C -0.080 4.080 21 N -0.384 5.384 22 H 0.082 0.918 23 H 0.225 0.775 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.112 -9.622 1.655 9.827 hybrid contribution 0.428 1.565 0.012 1.622 sum 1.539 -8.058 1.667 8.371 Atomic orbital electron populations 1.69605 1.05912 1.28220 1.50470 1.25247 0.95596 0.99668 0.97363 0.85957 0.78799 0.80682 0.78999 1.19981 1.20973 1.19964 1.19650 0.93279 0.82411 1.47685 0.88063 1.41926 1.09209 1.04644 1.63730 1.19779 0.88085 0.84728 0.83576 1.90346 1.14007 1.86849 1.56351 1.21233 0.97259 0.94779 0.98829 0.90380 1.21479 0.97316 1.01650 0.93992 1.21526 0.97633 0.99617 0.97019 1.21475 0.97661 0.97879 0.98024 1.21864 0.97907 1.03599 0.93187 1.20755 0.95315 0.96200 0.94826 0.91633 1.22149 0.96220 0.92504 0.97138 1.58865 1.27981 1.44217 1.07385 0.91835 0.77458 0.91527 0.92050 0.91180 0.92668 0.92820 0.92960 0.88319 0.93362 0.92573 0.91205 0.85629 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 9 N -0.56 -13.95 5.18 -10.96 -0.06 -14.00 16 10 C 0.45 10.23 5.31 -10.99 -0.06 10.17 16 11 O -0.59 -14.68 10.94 5.55 0.06 -14.62 16 12 C -0.10 -1.77 2.54 -91.77 -0.23 -2.01 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.11 -1.71 5.36 -26.73 -0.14 -1.86 16 15 C -0.12 -1.97 5.70 -26.73 -0.15 -2.12 16 16 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 17 C -0.13 -2.11 4.71 -26.70 -0.13 -2.24 16 18 C -0.05 -0.86 2.14 -90.59 -0.19 -1.05 16 19 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 20 C 0.05 0.84 5.87 -3.82 -0.02 0.82 16 21 N -0.86 -12.19 9.62 -10.37 -0.10 -12.29 16 22 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 23 H 0.39 9.54 7.32 -40.82 -0.30 9.24 16 24 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.37 7.22 -51.93 -0.37 1.00 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.97 5.51 -51.93 -0.29 1.69 16 31 H 0.05 0.71 6.68 -51.93 -0.35 0.37 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.40 5.64 -51.93 -0.29 1.11 16 34 H 0.33 4.17 9.08 -39.29 -0.36 3.81 16 35 H 0.34 4.54 7.25 -39.29 -0.28 4.26 16 LS Contribution 271.12 15.07 4.09 4.09 Total: -1.00 -28.43 271.12 -6.74 -35.17 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -5.10 Total: 17.43 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.33 Total: -8.01 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.57 Total: -50.01 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.06 Total: -14.62 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.43 -6.74 -35.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084302252.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.023 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds