Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 14 14 C 1.53001 * 109.47207 * 299.99218 * 12 10 9 15 15 C 1.53003 * 109.47453 * 300.00575 * 14 12 10 16 16 C 1.52999 * 109.46917 * 299.99643 * 15 14 12 17 17 C 1.53007 * 109.46946 * 60.00202 * 16 15 14 18 18 C 1.52999 * 109.47004 * 179.97438 * 12 10 9 19 19 H 1.08998 * 109.47611 * 179.97438 * 18 12 10 20 20 C 1.52998 * 109.47363 * 300.00059 * 18 12 10 21 21 N 1.46902 * 109.47374 * 185.00052 * 20 18 12 22 22 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47038 * 60.00421 * 14 12 10 25 25 H 1.08995 * 109.47475 * 180.02562 * 14 12 10 26 26 H 1.09003 * 109.47092 * 59.99545 * 15 14 12 27 27 H 1.08995 * 109.47357 * 179.97438 * 15 14 12 28 28 H 1.08993 * 109.47209 * 179.97438 * 16 15 14 29 29 H 1.08998 * 109.47611 * 299.99858 * 16 15 14 30 30 H 1.08990 * 109.47379 * 59.99681 * 17 16 15 31 31 H 1.09002 * 109.46846 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46940 * 304.99754 * 20 18 12 33 33 H 1.09000 * 109.47136 * 64.99536 * 20 18 12 34 34 H 1.00904 * 110.99700 * 179.97438 * 21 20 18 35 35 H 1.00900 * 110.99469 * 303.95167 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 1 0.6174 -4.9252 -0.8769 14 6 0.3637 -4.9377 1.2623 15 6 1.2428 -4.8504 2.5115 16 6 2.2370 -6.0133 2.5177 17 6 3.1171 -5.9385 1.2683 18 6 2.2379 -6.0258 0.0186 19 1 1.6929 -6.9698 0.0236 20 6 3.1176 -5.9509 -1.2309 21 7 3.9901 -7.1314 -1.2871 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 -0.3447 -4.1092 1.2579 25 1 -0.1811 -5.8818 1.2671 26 1 1.7879 -3.9064 2.5069 27 1 0.6158 -4.9032 3.4015 28 1 2.8636 -5.9509 3.4073 29 1 1.6921 -6.9573 2.5222 30 1 3.6621 -4.9946 1.2638 31 1 3.8251 -6.7673 1.2725 32 1 2.4859 -5.9234 -2.1188 33 1 3.7285 -5.0490 -1.1916 34 1 4.5813 -7.1055 -2.1045 35 1 4.5400 -7.2149 -0.4452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084302252.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = -83.495995 kcal Electronic energy + Delta-G solvation = -16629.184579 eV Core-core repulsion = 14045.880282 eV Total energy + Delta-G solvation = -2583.304297 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33535 -38.18441 -35.98058 -35.35740 -33.33301 -31.85287 -30.89224 -27.18357 -25.52771 -24.09264 -21.94029 -21.75735 -20.30356 -19.46827 -17.37076 -17.10110 -16.48232 -16.20001 -15.91417 -15.69555 -15.16236 -14.59710 -14.48402 -14.20918 -13.87858 -13.51566 -13.04810 -12.89308 -12.82916 -12.62385 -12.42285 -12.26011 -12.13700 -11.83761 -11.64431 -11.31895 -10.94025 -10.85565 -10.07689 -9.89472 -9.37322 -8.44537 -5.92159 1.37971 1.39308 1.49926 2.12222 2.29495 3.22338 3.26947 3.64151 3.86981 3.92927 4.03752 4.30380 4.37606 4.48333 4.57974 4.62807 4.66521 4.76548 4.90686 4.93522 5.07639 5.13360 5.22602 5.36593 5.38579 5.41221 5.46377 5.48267 5.76223 6.05026 6.26418 6.62918 6.64656 7.16435 7.62759 8.18852 8.72919 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.008153 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.457609 B = 3433.295067 C = 3785.210715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.989 3.011 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.454 3.546 11 O -0.613 6.613 12 C -0.095 4.095 13 H 0.091 0.909 14 C -0.103 4.103 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.125 4.125 18 C -0.048 4.048 19 H 0.090 0.910 20 C 0.055 3.945 21 N -0.846 5.846 22 H 0.276 0.724 23 H 0.393 0.607 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.343 0.657 35 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -10.965 2.062 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.243 3.757 11 O -0.500 6.500 12 C -0.117 4.117 13 H 0.109 0.891 14 C -0.141 4.141 15 C -0.158 4.158 16 C -0.145 4.145 17 C -0.163 4.163 18 C -0.067 4.067 19 H 0.109 0.891 20 C -0.075 4.075 21 N -0.376 5.376 22 H 0.085 0.915 23 H 0.226 0.774 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.155 0.845 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.521 -11.205 2.009 11.396 hybrid contribution 0.676 1.967 -0.107 2.082 sum 1.196 -9.239 1.901 9.508 Atomic orbital electron populations 1.69673 1.06798 1.29145 1.50757 1.25987 0.96484 1.02288 0.96632 0.85053 0.77794 0.77055 0.78824 1.19812 1.19581 1.19850 1.19613 0.92596 0.84183 1.49536 0.90362 1.41990 1.09134 1.04787 1.65214 1.20722 0.88068 0.85817 0.81125 1.90358 1.15545 1.87575 1.56538 1.21294 0.97617 0.92196 1.00592 0.89096 1.21497 0.96796 1.03205 0.92563 1.21524 0.97987 0.98120 0.98210 1.21466 0.97324 0.98377 0.97378 1.21768 0.98301 1.02063 0.94149 1.20776 0.95034 0.96318 0.94536 0.89139 1.21961 0.96188 0.91874 0.97506 1.58847 1.28218 1.42232 1.08257 0.91454 0.77386 0.92531 0.88319 0.95661 0.90538 0.92105 0.90047 0.92529 0.91451 0.92585 0.95052 0.84479 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.48 13.05 21.66 0.28 -50.20 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.58 -29.59 5.18 -306.98 -1.59 -31.18 16 10 C 0.45 21.10 5.31 87.66 0.47 21.56 16 11 O -0.61 -31.85 10.94 -3.07 -0.03 -31.89 16 12 C -0.10 -3.31 2.54 -11.54 -0.03 -3.34 16 13 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 14 C -0.10 -3.10 5.36 30.60 0.16 -2.93 16 15 C -0.12 -3.78 5.70 30.60 0.17 -3.60 16 16 C -0.11 -2.95 5.92 30.60 0.18 -2.77 16 17 C -0.13 -3.95 4.71 30.61 0.14 -3.80 16 18 C -0.05 -1.48 2.14 -10.78 -0.02 -1.50 16 19 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 20 C 0.06 1.82 5.87 86.30 0.51 2.33 16 21 N -0.85 -22.46 9.62 -186.71 -1.80 -24.26 16 22 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 23 H 0.39 19.66 7.32 -92.71 -0.68 18.98 16 24 H 0.06 1.82 7.56 -2.39 -0.02 1.80 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.02 1.00 7.22 -2.39 -0.02 0.98 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 2.30 5.51 -2.39 -0.01 2.28 16 31 H 0.07 1.84 6.68 -2.39 -0.02 1.82 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.03 1.28 5.64 -2.39 -0.01 1.27 16 34 H 0.34 8.03 9.08 -89.69 -0.81 7.22 16 35 H 0.34 8.54 7.25 -89.69 -0.65 7.89 16 Total: -1.00 -62.73 271.12 0.73 -62.00 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -1.03 Total: 42.36 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 2.86 Total: -12.30 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -3.10 Total: -105.63 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.03 Total: -31.89 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -62.73 0.73 -62.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084302252.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.497 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds