Wall clock time and date at job start Mon Mar 30 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48498 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46946 * 300.00484 * 3 2 1 6 6 H 1.48499 * 109.47046 * 60.00478 * 3 2 1 7 7 C 1.38954 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00344 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99438 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00266 * 180.02562 * 10 9 7 13 13 H 1.09006 * 108.84639 * 298.55324 * 12 10 9 14 14 C 1.50477 * 108.79780 * 57.06367 * 12 10 9 15 15 C 1.54241 * 108.51374 * 214.87846 * 14 12 10 16 16 C 1.45384 * 112.55939 * 280.12863 * 15 14 12 17 17 C 1.54246 * 112.49348 * 61.62934 * 16 15 14 18 18 C 1.50474 * 108.68571 * 280.31950 * 17 16 15 19 19 C 1.54055 * 108.87696 * 179.97438 * 12 10 9 20 20 H 1.09001 * 108.81176 * 76.74244 * 19 12 10 21 21 N 1.46897 * 108.81473 * 318.46284 * 19 12 10 22 22 H 0.96994 * 119.99844 * 359.97438 * 1 2 3 23 23 H 0.97006 * 120.00087 * 359.97438 * 9 7 2 24 24 H 1.08994 * 109.63106 * 334.58973 * 14 12 10 25 25 H 1.08998 * 109.62749 * 95.17409 * 14 12 10 26 26 H 1.08995 * 108.89858 * 40.76695 * 15 14 12 27 27 H 1.08997 * 108.89217 * 159.35838 * 15 14 12 28 28 H 1.09000 * 108.68931 * 300.96209 * 16 15 14 29 29 H 1.09002 * 109.01459 * 182.52223 * 16 15 14 30 30 H 1.09002 * 109.63104 * 160.51010 * 17 16 15 31 31 H 1.09005 * 109.62512 * 40.12487 * 17 16 15 32 32 H 1.08997 * 108.88115 * 214.83070 * 18 17 16 33 33 H 1.09001 * 108.87647 * 333.27329 * 18 17 16 34 34 H 1.00902 * 111.00080 * 176.70765 * 21 19 12 35 35 H 1.00896 * 111.00401 * 300.65869 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 1 0.6402 -4.9216 0.9048 14 6 0.3309 -4.8954 -1.1970 15 6 -0.9602 -5.6439 -0.8076 16 6 -0.7971 -7.0883 -0.8341 17 6 0.2671 -7.5805 0.1681 18 6 1.6303 -7.3638 -0.4311 19 6 2.2568 -6.0235 -0.0016 20 1 2.6662 -6.1332 1.0026 21 7 3.3524 -5.6955 -0.9235 22 1 -0.4849 0.8400 0.0004 23 1 0.3533 -2.3907 0.0002 24 1 0.0869 -3.8770 -1.4991 25 1 0.8224 -5.4163 -2.0187 26 1 -1.2528 -5.3433 0.1984 27 1 -1.7524 -5.3665 -1.5030 28 1 -0.5007 -7.3880 -1.8393 29 1 -1.7513 -7.5579 -0.5948 30 1 0.1193 -8.6419 0.3674 31 1 0.1822 -7.0181 1.0979 32 1 2.2862 -8.1762 -0.1184 33 1 1.5447 -7.3806 -1.5176 34 1 4.0636 -6.4112 -0.9092 35 1 3.0058 -5.5491 -1.8597 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087222194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:15 Heat of formation + Delta-G solvation = -43.698009 kcal Electronic energy + Delta-G solvation = -16493.626437 eV Core-core repulsion = 13912.047910 eV Total energy + Delta-G solvation = -2581.578527 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57678 -37.11326 -34.29006 -33.32956 -32.04815 -30.77062 -29.04216 -25.34043 -24.18206 -23.47454 -20.38554 -20.02013 -18.13764 -17.65971 -16.12216 -15.97934 -14.91419 -14.54375 -14.19562 -13.95632 -13.68030 -13.22630 -12.92976 -12.68383 -12.36226 -12.21956 -11.70567 -11.48739 -11.20781 -10.98954 -10.57677 -10.55992 -10.28863 -10.22086 -10.21742 -10.10920 -9.93774 -9.29768 -8.24880 -7.74905 -7.43488 -6.24913 -3.63775 3.25986 3.34987 3.42789 4.17365 4.30166 4.73513 4.79185 4.92433 5.14629 5.18358 5.30284 5.40052 5.48139 5.55634 5.60833 5.64334 5.86642 5.99935 6.09229 6.18972 6.22079 6.24475 6.27499 6.37785 6.53219 6.58052 6.66722 6.81827 7.70806 7.77546 8.02744 8.26131 8.84788 9.39106 9.78477 10.34510 10.93884 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041483 B = 0.007468 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.817415 B = 3748.434445 C = 4264.769169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.017 3.983 3 Si 0.925 3.075 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.290 4.290 8 H 0.101 0.899 9 N -0.579 5.579 10 C 0.450 3.550 11 O -0.546 6.546 12 C -0.093 4.093 13 H 0.079 0.921 14 C -0.109 4.109 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.152 4.152 19 C 0.119 3.881 20 H 0.072 0.928 21 N -0.804 5.804 22 H 0.267 0.733 23 H 0.389 0.611 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.323 0.677 35 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -13.273 -1.679 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.183 4.183 3 Si 0.753 3.247 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.419 4.419 8 H 0.118 0.882 9 N -0.218 5.218 10 C 0.234 3.766 11 O -0.426 6.426 12 C -0.116 4.116 13 H 0.097 0.903 14 C -0.147 4.147 15 C -0.158 4.158 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.192 4.192 19 C 0.007 3.993 20 H 0.090 0.910 21 N -0.331 5.331 22 H 0.077 0.923 23 H 0.222 0.778 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.008 -12.447 -1.218 12.667 hybrid contribution -0.613 -0.053 -0.490 0.787 sum -2.621 -12.499 -1.708 12.885 Atomic orbital electron populations 1.69623 1.05810 1.27541 1.52156 1.25183 0.95579 0.99411 0.98174 0.85869 0.79699 0.81677 0.77500 1.19391 1.21009 1.21010 1.19724 0.93248 0.82501 1.46461 0.88157 1.41936 1.08943 1.04554 1.66404 1.19816 0.88490 0.84442 0.83807 1.90594 1.13105 1.86516 1.52357 1.21073 0.96402 0.94916 0.99164 0.90284 1.21404 0.94708 1.01303 0.97308 1.20489 0.98008 0.95288 1.02021 1.20448 0.98707 0.96706 0.99252 1.21280 0.94574 1.00245 0.99204 1.22339 0.97084 0.99007 1.00773 1.21556 0.90455 0.89992 0.97336 0.90984 1.58907 1.12973 1.49881 1.11382 0.92298 0.77820 0.90627 0.92112 0.91935 0.92308 0.92637 0.92701 0.92536 0.91413 0.92752 0.92403 0.86491 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.51 13.05 55.50 0.72 -24.79 16 2 C 0.02 0.46 5.50 -17.47 -0.10 0.36 16 3 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.29 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 9 N -0.58 -15.04 4.85 -10.96 -0.05 -15.10 16 10 C 0.45 10.75 6.82 -10.98 -0.07 10.68 16 11 O -0.55 -14.85 13.76 5.55 0.08 -14.78 16 12 C -0.09 -1.66 1.87 -92.48 -0.17 -1.83 16 13 H 0.08 1.35 6.64 -51.93 -0.34 1.01 16 14 C -0.11 -1.72 4.98 -27.34 -0.14 -1.85 16 15 C -0.12 -1.55 5.25 -29.67 -0.16 -1.71 16 16 C -0.11 -1.26 5.26 -29.66 -0.16 -1.42 16 17 C -0.11 -1.28 5.59 -27.34 -0.15 -1.44 16 18 C -0.15 -1.84 4.87 -27.44 -0.13 -1.97 16 19 C 0.12 1.88 2.70 -66.61 -0.18 1.70 16 20 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 21 N -0.80 -13.62 6.57 -3.73 -0.02 -13.64 16 22 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.39 9.79 7.20 -40.82 -0.29 9.50 16 24 H 0.08 1.37 6.76 -51.93 -0.35 1.02 16 25 H 0.06 0.90 6.30 -51.93 -0.33 0.58 16 26 H 0.06 0.82 7.47 -51.93 -0.39 0.43 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.60 7.49 -51.93 -0.39 0.21 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.80 7.00 -51.93 -0.36 0.44 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.69 6.59 -51.93 -0.34 0.35 16 34 H 0.32 4.65 9.03 -39.29 -0.35 4.30 16 35 H 0.33 5.37 8.21 -39.29 -0.32 5.05 16 LS Contribution 270.49 15.07 4.08 4.08 Total: -1.00 -31.18 270.49 -6.73 -37.91 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -5.10 Total: 15.50 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.40 Total: -5.93 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.65 Total: -53.53 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.78 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.18 -6.73 -37.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087222194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.790 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds