Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.01927 * 2 1 4 4 O 1.21277 * 119.99808 * 235.02389 * 3 2 1 5 5 N 1.34781 * 119.99633 * 55.01630 * 3 2 1 6 6 C 1.46497 * 119.99397 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47105 * 180.02562 * 6 5 3 8 8 H 1.08007 * 119.99321 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00524 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99438 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00321 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47216 * 119.99788 * 11 9 7 14 14 H 1.48500 * 109.47054 * 240.00193 * 11 9 7 15 15 C 1.54269 * 110.03310 * 238.55444 * 2 1 3 16 16 C 1.54885 * 104.19751 * 264.32816 * 15 2 1 17 17 C 1.54883 * 102.74911 * 322.05764 * 16 15 2 18 18 C 1.53881 * 110.03158 * 121.39172 * 2 1 3 19 19 H 1.09001 * 110.02989 * 359.94973 * 18 2 1 20 20 N 1.46901 * 110.02892 * 238.56980 * 18 2 1 21 21 H 1.08996 * 109.47129 * 298.61259 * 1 2 3 22 22 H 1.09007 * 109.46972 * 58.61163 * 1 2 3 23 23 H 1.08999 * 109.47480 * 178.60969 * 1 2 3 24 24 H 0.96991 * 120.00329 * 0.02562 * 5 3 2 25 25 H 1.08995 * 109.47494 * 300.00190 * 6 5 3 26 26 H 1.08997 * 109.47189 * 60.00679 * 6 5 3 27 27 H 0.97002 * 119.99756 * 180.02562 * 10 9 7 28 28 H 1.09005 * 110.48345 * 23.00554 * 15 2 1 29 29 H 1.08998 * 110.48651 * 145.64509 * 15 2 1 30 30 H 1.09000 * 110.75719 * 80.37430 * 16 15 2 31 31 H 1.09000 * 110.75484 * 203.74013 * 16 15 2 32 32 H 1.09002 * 110.48884 * 279.26487 * 17 16 15 33 33 H 1.09007 * 110.48828 * 156.62335 * 17 16 15 34 34 H 1.00900 * 110.99342 * 172.92479 * 20 18 2 35 35 H 1.00899 * 110.99578 * 296.87549 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 8 2.8192 1.7796 -0.8606 5 7 1.6478 2.2782 0.9564 6 6 2.1497 3.6545 0.9566 7 6 1.5567 4.4052 2.1210 8 1 0.8745 3.9068 2.7938 9 6 1.8850 5.7283 2.3275 10 7 2.7162 6.3350 1.5085 11 14 1.1505 6.6586 3.7712 12 1 0.2525 5.7565 4.5361 13 1 2.2412 7.1393 4.6568 14 1 0.3733 7.8197 3.2681 15 6 2.0585 -0.7561 -1.2365 16 6 2.3280 -2.1905 -0.7181 17 6 2.8874 -1.9404 0.7044 18 6 2.0571 -0.7531 1.2341 19 1 1.2228 -1.1177 1.8334 20 7 2.9056 0.1344 2.0406 21 1 -0.3633 0.4921 0.9021 22 1 -0.3633 0.5353 -0.8773 23 1 -0.3634 -1.0273 -0.0249 24 1 1.0295 1.9873 1.6448 25 1 3.2360 3.6451 1.0462 26 1 1.8661 4.1449 0.0254 27 1 2.9475 7.2658 1.6540 28 1 1.3061 -0.7706 -2.0251 29 1 2.9811 -0.3009 -1.5965 30 1 1.4030 -2.7655 -0.6739 31 1 3.0675 -2.6938 -1.3410 32 1 3.9439 -1.6764 0.6579 33 1 2.7400 -2.8192 1.3323 34 1 3.1654 -0.3060 2.9104 35 1 3.7224 0.4223 1.5229 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134927872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -56.779676 kcal Electronic energy + Delta-G solvation = -16338.230776 eV Core-core repulsion = 13756.084986 eV Total energy + Delta-G solvation = -2582.145791 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02234 -37.03139 -34.03455 -32.61877 -32.24914 -31.00889 -27.02508 -26.69562 -24.80387 -22.82572 -20.88531 -20.51669 -18.51812 -16.81150 -16.31883 -15.74935 -15.03687 -14.56839 -14.43475 -13.99201 -13.69157 -13.34167 -12.89625 -12.51541 -12.34549 -12.14067 -11.83554 -11.58066 -11.22028 -10.99715 -10.89919 -10.85890 -10.76096 -10.60799 -10.38528 -10.19908 -9.24572 -8.73880 -8.61680 -8.41438 -7.56759 -6.06574 -4.11380 3.29240 3.36193 3.39810 3.61435 4.24953 4.44741 4.50647 4.72843 4.77790 5.08268 5.29553 5.32460 5.37643 5.49261 5.53399 5.62900 5.70432 5.81379 5.90820 6.00108 6.08011 6.16887 6.30767 6.34152 6.55203 7.32316 7.47645 7.62370 7.68319 7.70160 7.85156 8.11361 8.87943 8.96741 9.36674 9.56379 11.03955 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.006568 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.905343 B = 4262.038711 C = 4390.832869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C 0.522 3.478 4 O -0.573 6.573 5 N -0.685 5.685 6 C 0.252 3.748 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.889 5.889 11 Si 0.901 3.099 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.284 1.284 15 C -0.109 4.109 16 C -0.121 4.121 17 C -0.159 4.159 18 C 0.101 3.899 19 H 0.087 0.913 20 N -0.834 5.834 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.392 0.608 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.263 0.737 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.338 0.662 35 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -16.425 -0.249 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 C 0.306 3.694 4 O -0.454 6.454 5 N -0.331 5.331 6 C 0.130 3.870 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.142 4.142 10 N -0.527 5.527 11 Si 0.729 3.271 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.147 4.147 16 C -0.159 4.159 17 C -0.198 4.198 18 C -0.012 4.012 19 H 0.105 0.895 20 N -0.364 5.364 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.225 0.775 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.907 -15.423 -0.839 15.717 hybrid contribution 0.117 -0.275 1.037 1.080 sum -2.790 -15.698 0.198 15.945 Atomic orbital electron populations 1.21836 0.92826 1.01804 1.02709 1.21514 0.96817 0.94481 0.96036 1.19853 0.81510 0.86221 0.81809 1.90611 1.37238 1.78626 1.38931 1.46169 1.46318 1.12972 1.27613 1.19010 0.95090 0.75950 0.96909 1.21289 1.28094 0.96142 1.11587 0.91971 1.24947 0.95095 0.97448 0.96693 1.69998 1.33915 1.11818 1.36963 0.86397 0.78902 0.79710 0.82099 1.19687 1.20934 1.20961 1.22382 1.02603 0.93842 0.95911 1.22420 1.00464 0.97120 0.95852 1.23255 1.00060 0.99188 0.97325 1.22110 0.96011 0.89962 0.93112 0.89508 1.58873 1.25622 1.43698 1.08198 0.91846 0.92133 0.92184 0.77518 0.95837 0.96089 0.92721 0.91512 0.89560 0.91632 0.91735 0.91604 0.91779 0.84873 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 7.98 37.16 0.30 -1.43 16 2 C -0.08 -1.26 0.79 -154.54 -0.12 -1.38 16 3 C 0.52 10.71 5.04 -10.98 -0.06 10.65 16 4 O -0.57 -14.10 15.39 5.56 0.09 -14.02 16 5 N -0.69 -14.97 4.57 -61.47 -0.28 -15.25 16 6 C 0.25 6.86 5.43 -5.19 -0.03 6.84 16 7 C -0.53 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 11 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.11 -1.52 5.72 -25.07 -0.14 -1.66 16 16 C -0.12 -1.29 6.91 -24.74 -0.17 -1.46 16 17 C -0.16 -1.72 6.51 -25.08 -0.16 -1.88 16 18 C 0.10 1.27 3.68 -66.59 -0.24 1.02 16 19 H 0.09 0.98 7.67 -51.93 -0.40 0.59 16 20 N -0.83 -11.81 7.41 -3.71 -0.03 -11.84 16 21 H 0.06 0.82 7.39 -51.93 -0.38 0.43 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.39 7.82 7.44 -40.82 -0.30 7.52 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 0.86 7.84 -51.93 -0.41 0.46 16 29 H 0.09 1.42 6.83 -51.93 -0.35 1.07 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.34 3.95 9.08 -39.29 -0.36 3.59 16 35 H 0.35 5.52 8.04 -39.29 -0.32 5.20 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -31.87 283.40 -6.71 -38.58 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.42 Total: 10.80 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.05 Total: -2.84 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.43 Total: -53.13 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.87 -6.71 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134927872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.204 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds